Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04936

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04935 and MPMX19_04936 are separated by 17 nucleotidesMPMX19_04936 and MPMX19_04937 are separated by 51 nucleotidesMPMX19_04937 and MPMX19_04938 overlap by 4 nucleotides MPMX19_04935: MPMX19_04935 - Beta-glucosidase A, at 396,786 to 398,114 _04935 MPMX19_04936: MPMX19_04936 - Urocanate hydratase, at 398,132 to 399,814 _04936 MPMX19_04937: MPMX19_04937 - Mannosyl-D-glycerate transport/metabolism system repressor MngR, at 399,866 to 400,594 _04937 MPMX19_04938: MPMX19_04938 - Imidazolonepropionase, at 400,591 to 401,844 _04938 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2at 397.146 kb on + strand, within MPMX19_04935at 397.146 kb on + strand, within MPMX19_04935at 397.146 kb on + strand, within MPMX19_04935at 397.146 kb on + strand, within MPMX19_04935at 397.146 kb on + strand, within MPMX19_04935at 397.147 kb on - strand, within MPMX19_04935at 397.224 kb on + strand, within MPMX19_04935at 397.225 kb on - strand, within MPMX19_04935at 397.564 kb on - strand, within MPMX19_04935at 397.564 kb on - strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.596 kb on + strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.597 kb on - strand, within MPMX19_04935at 397.659 kb on + strand, within MPMX19_04935at 397.659 kb on + strand, within MPMX19_04935at 397.671 kb on + strand, within MPMX19_04935at 397.672 kb on - strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.821 kb on + strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.822 kb on - strand, within MPMX19_04935at 397.905 kb on + strand, within MPMX19_04935at 397.906 kb on - strand, within MPMX19_04935at 397.917 kb on + strand, within MPMX19_04935at 397.917 kb on + strand, within MPMX19_04935at 397.917 kb on + strand, within MPMX19_04935at 397.917 kb on + strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.918 kb on - strand, within MPMX19_04935at 397.969 kb on - strand, within MPMX19_04935at 397.969 kb on - strand, within MPMX19_04935at 397.969 kb on - strand, within MPMX19_04935at 398.013 kb on + strandat 398.013 kb on + strandat 398.088 kb on + strandat 398.088 kb on + strandat 398.089 kb on - strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.133 kb on + strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.134 kb on - strandat 398.191 kb on - strandat 398.680 kb on + strand, within MPMX19_04936at 398.680 kb on + strand, within MPMX19_04936at 398.681 kb on - strand, within MPMX19_04936at 398.681 kb on - strand, within MPMX19_04936at 398.681 kb on - strand, within MPMX19_04936at 398.681 kb on - strand, within MPMX19_04936at 398.755 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.757 kb on + strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.758 kb on - strand, within MPMX19_04936at 398.835 kb on + strand, within MPMX19_04936at 398.836 kb on - strand, within MPMX19_04936at 398.982 kb on + strand, within MPMX19_04936at 398.982 kb on + strand, within MPMX19_04936at 398.982 kb on + strand, within MPMX19_04936at 398.983 kb on - strand, within MPMX19_04936at 399.187 kb on - strand, within MPMX19_04936at 399.187 kb on - strand, within MPMX19_04936at 399.336 kb on + strand, within MPMX19_04936at 399.336 kb on + strand, within MPMX19_04936at 399.336 kb on + strand, within MPMX19_04936at 399.336 kb on + strand, within MPMX19_04936at 399.336 kb on + strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.337 kb on - strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.369 kb on + strand, within MPMX19_04936at 399.370 kb on - strand, within MPMX19_04936at 399.370 kb on - strand, within MPMX19_04936at 399.370 kb on - strand, within MPMX19_04936at 399.370 kb on - strand, within MPMX19_04936at 399.370 kb on - strand, within MPMX19_04936at 399.402 kb on + strand, within MPMX19_04936at 399.402 kb on + strand, within MPMX19_04936at 399.402 kb on + strand, within MPMX19_04936at 399.403 kb on - strand, within MPMX19_04936at 399.403 kb on - strand, within MPMX19_04936at 399.403 kb on - strand, within MPMX19_04936at 399.403 kb on - strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.432 kb on + strand, within MPMX19_04936at 399.433 kb on - strand, within MPMX19_04936at 399.433 kb on - strand, within MPMX19_04936at 399.433 kb on - strand, within MPMX19_04936at 399.433 kb on - strand, within MPMX19_04936at 399.433 kb on - strand, within MPMX19_04936at 399.663 kb on + strandat 399.664 kb on - strandat 399.664 kb on - strandat 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.086 kb on + strand, within MPMX19_04937at 400.087 kb on - strand, within MPMX19_04937at 400.087 kb on - strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.125 kb on + strand, within MPMX19_04937at 400.126 kb on - strand, within MPMX19_04937at 400.431 kb on - strand, within MPMX19_04937at 400.431 kb on - strand, within MPMX19_04937at 400.561 kb on - strandat 400.561 kb on - strandat 400.667 kb on - strandat 400.673 kb on + strandat 400.673 kb on + strandat 400.673 kb on + strandat 400.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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397,146 + MPMX19_04935 0.27 -0.4
397,146 + MPMX19_04935 0.27 -0.4
397,146 + MPMX19_04935 0.27 +0.3
397,146 + MPMX19_04935 0.27 -0.9
397,146 + MPMX19_04935 0.27 -0.7
397,147 - MPMX19_04935 0.27 -1.1
397,224 + MPMX19_04935 0.33 -0.5
397,225 - MPMX19_04935 0.33 -2.2
397,564 - MPMX19_04935 0.59 +1.3
397,564 - MPMX19_04935 0.59 -1.7
397,596 + MPMX19_04935 0.61 +1.2
397,596 + MPMX19_04935 0.61 -2.4
397,596 + MPMX19_04935 0.61 -0.7
397,596 + MPMX19_04935 0.61 -0.4
397,596 + MPMX19_04935 0.61 -0.8
397,596 + MPMX19_04935 0.61 -0.8
397,596 + MPMX19_04935 0.61 -0.7
397,596 + MPMX19_04935 0.61 +0.0
397,596 + MPMX19_04935 0.61 -0.9
397,596 + MPMX19_04935 0.61 +0.5
397,596 + MPMX19_04935 0.61 -0.7
397,596 + MPMX19_04935 0.61 -0.4
397,597 - MPMX19_04935 0.61 -0.1
397,597 - MPMX19_04935 0.61 -1.1
397,597 - MPMX19_04935 0.61 -0.8
397,597 - MPMX19_04935 0.61 -0.5
397,597 - MPMX19_04935 0.61 +1.8
397,597 - MPMX19_04935 0.61 -0.7
397,597 - MPMX19_04935 0.61 +0.1
397,597 - MPMX19_04935 0.61 -0.8
397,597 - MPMX19_04935 0.61 -1.8
397,659 + MPMX19_04935 0.66 -0.2
397,659 + MPMX19_04935 0.66 -0.9
397,671 + MPMX19_04935 0.67 -0.3
397,672 - MPMX19_04935 0.67 +0.4
397,821 + MPMX19_04935 0.78 -2.3
397,821 + MPMX19_04935 0.78 +0.1
397,821 + MPMX19_04935 0.78 +0.8
397,821 + MPMX19_04935 0.78 -0.1
397,821 + MPMX19_04935 0.78 +0.2
397,821 + MPMX19_04935 0.78 -0.8
397,821 + MPMX19_04935 0.78 -0.1
397,821 + MPMX19_04935 0.78 +1.2
397,821 + MPMX19_04935 0.78 -0.6
397,821 + MPMX19_04935 0.78 -0.8
397,821 + MPMX19_04935 0.78 -2.3
397,821 + MPMX19_04935 0.78 -1.7
397,821 + MPMX19_04935 0.78 -0.4
397,821 + MPMX19_04935 0.78 +1.4
397,821 + MPMX19_04935 0.78 -0.8
397,821 + MPMX19_04935 0.78 -1.2
397,821 + MPMX19_04935 0.78 +0.1
397,821 + MPMX19_04935 0.78 +0.8
397,821 + MPMX19_04935 0.78 +0.2
397,822 - MPMX19_04935 0.78 +0.8
397,822 - MPMX19_04935 0.78 +0.9
397,822 - MPMX19_04935 0.78 -0.1
397,822 - MPMX19_04935 0.78 -1.4
397,822 - MPMX19_04935 0.78 -1.0
397,822 - MPMX19_04935 0.78 -0.3
397,822 - MPMX19_04935 0.78 -0.2
397,822 - MPMX19_04935 0.78 -0.8
397,822 - MPMX19_04935 0.78 -0.4
397,822 - MPMX19_04935 0.78 -0.6
397,822 - MPMX19_04935 0.78 -0.4
397,822 - MPMX19_04935 0.78 +0.1
397,822 - MPMX19_04935 0.78 +0.0
397,822 - MPMX19_04935 0.78 -0.8
397,905 + MPMX19_04935 0.84 -0.3
397,906 - MPMX19_04935 0.84 +0.3
397,917 + MPMX19_04935 0.85 -0.6
397,917 + MPMX19_04935 0.85 -1.6
397,917 + MPMX19_04935 0.85 +0.2
397,917 + MPMX19_04935 0.85 +0.3
397,918 - MPMX19_04935 0.85 -1.6
397,918 - MPMX19_04935 0.85 +0.0
397,918 - MPMX19_04935 0.85 -0.8
397,918 - MPMX19_04935 0.85 -1.4
397,918 - MPMX19_04935 0.85 -0.2
397,918 - MPMX19_04935 0.85 +0.6
397,969 - MPMX19_04935 0.89 -0.8
397,969 - MPMX19_04935 0.89 -0.1
397,969 - MPMX19_04935 0.89 -2.4
398,013 + -1.3
398,013 + +0.1
398,088 + +0.8
398,088 + +0.3
398,089 - +0.4
398,133 + -1.1
398,133 + -0.3
398,133 + -1.6
398,133 + -0.2
398,133 + +0.5
398,133 + -1.5
398,133 + -0.9
398,134 - -0.8
398,134 - -1.3
398,134 - -0.4
398,134 - +0.3
398,134 - -0.5
398,134 - -1.9
398,134 - +0.2
398,134 - -0.4
398,134 - -0.3
398,134 - -0.3
398,134 - +0.2
398,134 - -2.1
398,191 - +0.1
398,680 + MPMX19_04936 0.33 +0.3
398,680 + MPMX19_04936 0.33 -1.1
398,681 - MPMX19_04936 0.33 -0.1
398,681 - MPMX19_04936 0.33 -0.6
398,681 - MPMX19_04936 0.33 -0.1
398,681 - MPMX19_04936 0.33 +0.6
398,755 + MPMX19_04936 0.37 +0.9
398,757 + MPMX19_04936 0.37 -1.8
398,757 + MPMX19_04936 0.37 -0.1
398,757 + MPMX19_04936 0.37 -0.3
398,757 + MPMX19_04936 0.37 -0.1
398,757 + MPMX19_04936 0.37 +0.8
398,757 + MPMX19_04936 0.37 +0.3
398,757 + MPMX19_04936 0.37 -1.5
398,757 + MPMX19_04936 0.37 +0.2
398,757 + MPMX19_04936 0.37 -0.1
398,757 + MPMX19_04936 0.37 -0.5
398,758 - MPMX19_04936 0.37 -0.4
398,758 - MPMX19_04936 0.37 -0.2
398,758 - MPMX19_04936 0.37 -0.0
398,758 - MPMX19_04936 0.37 +0.4
398,758 - MPMX19_04936 0.37 -2.5
398,758 - MPMX19_04936 0.37 +0.8
398,835 + MPMX19_04936 0.42 +0.4
398,836 - MPMX19_04936 0.42 +0.5
398,982 + MPMX19_04936 0.51 -0.4
398,982 + MPMX19_04936 0.51 -0.4
398,982 + MPMX19_04936 0.51 -0.8
398,983 - MPMX19_04936 0.51 -1.4
399,187 - MPMX19_04936 0.63 -0.5
399,187 - MPMX19_04936 0.63 -0.6
399,336 + MPMX19_04936 0.72 -1.3
399,336 + MPMX19_04936 0.72 +0.5
399,336 + MPMX19_04936 0.72 -0.4
399,336 + MPMX19_04936 0.72 -0.4
399,336 + MPMX19_04936 0.72 -0.5
399,337 - MPMX19_04936 0.72 +1.2
399,337 - MPMX19_04936 0.72 +1.4
399,337 - MPMX19_04936 0.72 -0.7
399,337 - MPMX19_04936 0.72 -2.4
399,337 - MPMX19_04936 0.72 -1.4
399,337 - MPMX19_04936 0.72 -0.2
399,337 - MPMX19_04936 0.72 -1.3
399,337 - MPMX19_04936 0.72 -0.6
399,337 - MPMX19_04936 0.72 +0.1
399,337 - MPMX19_04936 0.72 -0.2
399,337 - MPMX19_04936 0.72 -0.2
399,337 - MPMX19_04936 0.72 +0.2
399,337 - MPMX19_04936 0.72 -0.2
399,369 + MPMX19_04936 0.73 -0.9
399,369 + MPMX19_04936 0.73 -2.2
399,369 + MPMX19_04936 0.73 -0.9
399,369 + MPMX19_04936 0.73 +0.2
399,369 + MPMX19_04936 0.73 -0.2
399,369 + MPMX19_04936 0.73 -0.8
399,369 + MPMX19_04936 0.73 -0.7
399,369 + MPMX19_04936 0.73 +0.8
399,370 - MPMX19_04936 0.74 -0.7
399,370 - MPMX19_04936 0.74 -0.6
399,370 - MPMX19_04936 0.74 -0.4
399,370 - MPMX19_04936 0.74 +0.9
399,370 - MPMX19_04936 0.74 -0.4
399,402 + MPMX19_04936 0.75 -0.1
399,402 + MPMX19_04936 0.75 +1.4
399,402 + MPMX19_04936 0.75 +0.4
399,403 - MPMX19_04936 0.76 +0.3
399,403 - MPMX19_04936 0.76 -0.3
399,403 - MPMX19_04936 0.76 +0.4
399,403 - MPMX19_04936 0.76 -1.6
399,432 + MPMX19_04936 0.77 -0.6
399,432 + MPMX19_04936 0.77 -1.4
399,432 + MPMX19_04936 0.77 -1.6
399,432 + MPMX19_04936 0.77 -1.7
399,432 + MPMX19_04936 0.77 -0.8
399,432 + MPMX19_04936 0.77 +0.4
399,432 + MPMX19_04936 0.77 -0.6
399,432 + MPMX19_04936 0.77 -2.5
399,433 - MPMX19_04936 0.77 -0.6
399,433 - MPMX19_04936 0.77 -0.7
399,433 - MPMX19_04936 0.77 +0.6
399,433 - MPMX19_04936 0.77 -0.2
399,433 - MPMX19_04936 0.77 +2.3
399,663 + +1.2
399,664 - -0.2
399,664 - +1.3
400,086 + MPMX19_04937 0.30 -1.2
400,086 + MPMX19_04937 0.30 +0.5
400,086 + MPMX19_04937 0.30 -0.0
400,086 + MPMX19_04937 0.30 -0.8
400,087 - MPMX19_04937 0.30 -0.0
400,087 - MPMX19_04937 0.30 -0.4
400,125 + MPMX19_04937 0.36 -1.9
400,125 + MPMX19_04937 0.36 -1.1
400,125 + MPMX19_04937 0.36 -1.1
400,126 - MPMX19_04937 0.36 +0.2
400,431 - MPMX19_04937 0.78 -0.4
400,431 - MPMX19_04937 0.78 -0.9
400,561 - -1.5
400,561 - -0.6
400,667 - +0.7
400,673 + -1.1
400,673 + +1.2
400,673 + -0.0
400,674 - -1.1

Or see this region's nucleotide sequence