Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04910

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04908 and MPMX19_04909 are separated by 122 nucleotidesMPMX19_04909 and MPMX19_04910 are separated by 116 nucleotidesMPMX19_04910 and MPMX19_04911 are separated by 70 nucleotides MPMX19_04908: MPMX19_04908 - hypothetical protein, at 363,294 to 363,605 _04908 MPMX19_04909: MPMX19_04909 - hypothetical protein, at 363,728 to 364,207 _04909 MPMX19_04910: MPMX19_04910 - hypothetical protein, at 364,324 to 366,099 _04910 MPMX19_04911: MPMX19_04911 - hypothetical protein, at 366,170 to 368,194 _04911 Position (kb) 364 365 366 367Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 363.373 kb on + strand, within MPMX19_04908at 363.624 kb on + strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.625 kb on - strandat 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.987 kb on + strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 363.988 kb on - strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.005 kb on + strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.006 kb on - strand, within MPMX19_04909at 364.188 kb on + strandat 364.189 kb on - strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.246 kb on + strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.247 kb on - strandat 364.412 kb on + strandat 364.412 kb on + strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.413 kb on - strandat 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.781 kb on + strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 364.782 kb on - strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.330 kb on + strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.331 kb on - strand, within MPMX19_04910at 365.339 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.453 kb on + strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 365.454 kb on - strand, within MPMX19_04910at 366.023 kb on + strandat 366.024 kb on - strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.079 kb on + strandat 366.080 kb on - strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.118 kb on + strandat 366.119 kb on - strandat 366.689 kb on + strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911at 366.690 kb on - strand, within MPMX19_04911

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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363,373 + MPMX19_04908 0.25 +0.4
363,624 + -0.8
363,625 - -0.6
363,625 - +0.3
363,625 - -1.0
363,625 - -0.3
363,625 - +0.6
363,625 - -1.6
363,987 + MPMX19_04909 0.54 -0.6
363,987 + MPMX19_04909 0.54 -1.0
363,987 + MPMX19_04909 0.54 -1.0
363,987 + MPMX19_04909 0.54 -0.0
363,988 - MPMX19_04909 0.54 +1.2
363,988 - MPMX19_04909 0.54 -1.4
363,988 - MPMX19_04909 0.54 +0.0
363,988 - MPMX19_04909 0.54 +0.7
364,005 + MPMX19_04909 0.58 -0.4
364,005 + MPMX19_04909 0.58 +1.0
364,005 + MPMX19_04909 0.58 -2.3
364,005 + MPMX19_04909 0.58 +0.0
364,005 + MPMX19_04909 0.58 +0.4
364,006 - MPMX19_04909 0.58 -0.1
364,006 - MPMX19_04909 0.58 -0.9
364,006 - MPMX19_04909 0.58 -0.8
364,188 + -1.5
364,189 - -3.4
364,246 + +0.7
364,246 + +0.5
364,246 + +1.6
364,246 + -0.4
364,246 + -0.4
364,246 + +0.3
364,247 - +0.7
364,247 - -0.4
364,247 - -0.1
364,247 - -2.8
364,247 - -1.7
364,247 - -2.6
364,247 - -1.1
364,412 + -0.1
364,412 + +2.2
364,413 - +0.2
364,413 - -1.6
364,413 - -0.3
364,781 + MPMX19_04910 0.26 +0.7
364,781 + MPMX19_04910 0.26 -0.6
364,781 + MPMX19_04910 0.26 -1.7
364,781 + MPMX19_04910 0.26 -1.3
364,782 - MPMX19_04910 0.26 -0.9
364,782 - MPMX19_04910 0.26 -0.1
364,782 - MPMX19_04910 0.26 +0.0
364,782 - MPMX19_04910 0.26 -1.3
365,330 + MPMX19_04910 0.57 -0.1
365,330 + MPMX19_04910 0.57 +3.3
365,330 + MPMX19_04910 0.57 -0.3
365,330 + MPMX19_04910 0.57 +1.7
365,330 + MPMX19_04910 0.57 -1.8
365,331 - MPMX19_04910 0.57 -0.6
365,331 - MPMX19_04910 0.57 -0.9
365,331 - MPMX19_04910 0.57 -1.8
365,331 - MPMX19_04910 0.57 -0.7
365,331 - MPMX19_04910 0.57 +0.2
365,331 - MPMX19_04910 0.57 +0.2
365,331 - MPMX19_04910 0.57 +0.4
365,331 - MPMX19_04910 0.57 -0.3
365,339 + MPMX19_04910 0.57 -1.1
365,453 + MPMX19_04910 0.64 -0.2
365,453 + MPMX19_04910 0.64 -1.8
365,453 + MPMX19_04910 0.64 -1.7
365,453 + MPMX19_04910 0.64 -0.0
365,454 - MPMX19_04910 0.64 -0.8
365,454 - MPMX19_04910 0.64 +0.7
365,454 - MPMX19_04910 0.64 +0.1
366,023 + -0.1
366,024 - +0.2
366,079 + -1.0
366,079 + +0.2
366,079 + -1.7
366,079 + -0.3
366,080 - +0.2
366,118 + -0.4
366,118 + +0.2
366,118 + +0.2
366,119 - -0.6
366,689 + MPMX19_04911 0.26 -0.1
366,690 - MPMX19_04911 0.26 +0.0
366,690 - MPMX19_04911 0.26 -1.2

Or see this region's nucleotide sequence