Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04901

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04900 and MPMX19_04901 are separated by 26 nucleotidesMPMX19_04901 and MPMX19_04902 overlap by 4 nucleotidesMPMX19_04902 and MPMX19_04903 are separated by 337 nucleotides MPMX19_04900: MPMX19_04900 - putative 3-hydroxyacyl-CoA dehydrogenase, at 349,498 to 351,837 _04900 MPMX19_04901: MPMX19_04901 - 3-ketoacyl-CoA thiolase, at 351,864 to 353,000 _04901 MPMX19_04902: MPMX19_04902 - hypothetical protein, at 352,997 to 353,476 _04902 MPMX19_04903: MPMX19_04903 - hypothetical protein, at 353,814 to 354,002 _04903 Position (kb) 351 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 350.903 kb on + strand, within MPMX19_04900at 350.903 kb on + strand, within MPMX19_04900at 350.903 kb on + strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.904 kb on - strand, within MPMX19_04900at 350.966 kb on + strand, within MPMX19_04900at 350.967 kb on - strand, within MPMX19_04900at 350.967 kb on - strand, within MPMX19_04900at 350.994 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.996 kb on + strand, within MPMX19_04900at 350.997 kb on - strand, within MPMX19_04900at 350.997 kb on - strand, within MPMX19_04900at 351.386 kb on + strand, within MPMX19_04900at 351.386 kb on + strand, within MPMX19_04900at 351.386 kb on + strand, within MPMX19_04900at 351.386 kb on + strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.387 kb on - strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.530 kb on + strand, within MPMX19_04900at 351.531 kb on - strand, within MPMX19_04900at 351.531 kb on - strand, within MPMX19_04900at 351.531 kb on - strand, within MPMX19_04900at 351.531 kb on - strand, within MPMX19_04900at 352.255 kb on + strand, within MPMX19_04901at 352.255 kb on + strand, within MPMX19_04901at 352.255 kb on + strand, within MPMX19_04901at 352.255 kb on + strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.256 kb on - strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.528 kb on + strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.529 kb on - strand, within MPMX19_04901at 352.570 kb on + strand, within MPMX19_04901at 352.570 kb on + strand, within MPMX19_04901at 352.570 kb on + strand, within MPMX19_04901at 352.570 kb on + strand, within MPMX19_04901at 352.571 kb on - strand, within MPMX19_04901at 352.582 kb on + strand, within MPMX19_04901at 352.582 kb on + strand, within MPMX19_04901at 352.583 kb on - strand, within MPMX19_04901at 352.583 kb on - strand, within MPMX19_04901at 352.583 kb on - strand, within MPMX19_04901at 352.735 kb on + strand, within MPMX19_04901at 353.160 kb on + strand, within MPMX19_04902at 353.160 kb on + strand, within MPMX19_04902at 353.160 kb on + strand, within MPMX19_04902at 353.161 kb on - strand, within MPMX19_04902at 353.161 kb on - strand, within MPMX19_04902at 353.161 kb on - strand, within MPMX19_04902at 353.196 kb on + strand, within MPMX19_04902at 353.196 kb on + strand, within MPMX19_04902at 353.196 kb on + strand, within MPMX19_04902at 353.197 kb on - strand, within MPMX19_04902at 353.289 kb on + strand, within MPMX19_04902at 353.341 kb on - strand, within MPMX19_04902at 353.341 kb on - strand, within MPMX19_04902at 353.341 kb on - strand, within MPMX19_04902at 353.341 kb on - strand, within MPMX19_04902at 353.502 kb on + strandat 353.502 kb on + strandat 353.507 kb on - strandat 353.507 kb on - strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.599 kb on + strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.600 kb on - strandat 353.651 kb on + strandat 353.651 kb on + strandat 353.651 kb on + strandat 353.651 kb on + strandat 353.651 kb on + strandat 353.652 kb on - strandat 353.652 kb on - strandat 353.652 kb on - strandat 353.652 kb on - strandat 353.652 kb on - strandat 353.759 kb on + strandat 353.759 kb on + strandat 353.759 kb on + strandat 353.759 kb on + strandat 353.760 kb on - strandat 353.760 kb on - strandat 353.760 kb on - strandat 353.833 kb on + strand, within MPMX19_04903at 353.833 kb on + strand, within MPMX19_04903at 353.833 kb on + strand, within MPMX19_04903at 353.833 kb on + strand, within MPMX19_04903at 353.834 kb on - strand, within MPMX19_04903at 353.834 kb on - strand, within MPMX19_04903at 353.852 kb on - strand, within MPMX19_04903at 353.852 kb on - strand, within MPMX19_04903at 353.904 kb on + strand, within MPMX19_04903at 353.904 kb on + strand, within MPMX19_04903at 353.904 kb on + strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.905 kb on - strand, within MPMX19_04903at 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.994 kb on + strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 353.995 kb on - strandat 354.000 kb on + strandat 354.000 kb on + strandat 354.000 kb on + strandat 354.000 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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350,903 + MPMX19_04900 0.60 +0.3
350,903 + MPMX19_04900 0.60 +0.7
350,903 + MPMX19_04900 0.60 -1.1
350,904 - MPMX19_04900 0.60 +1.2
350,904 - MPMX19_04900 0.60 +0.5
350,904 - MPMX19_04900 0.60 +2.2
350,904 - MPMX19_04900 0.60 -0.1
350,904 - MPMX19_04900 0.60 -0.1
350,904 - MPMX19_04900 0.60 -0.8
350,966 + MPMX19_04900 0.63 -0.5
350,967 - MPMX19_04900 0.63 -0.6
350,967 - MPMX19_04900 0.63 +0.0
350,994 + MPMX19_04900 0.64 -0.3
350,996 + MPMX19_04900 0.64 -1.1
350,996 + MPMX19_04900 0.64 -0.6
350,996 + MPMX19_04900 0.64 -1.3
350,996 + MPMX19_04900 0.64 -0.1
350,996 + MPMX19_04900 0.64 -0.3
350,996 + MPMX19_04900 0.64 -1.4
350,997 - MPMX19_04900 0.64 -1.1
350,997 - MPMX19_04900 0.64 -0.8
351,386 + MPMX19_04900 0.81 -1.4
351,386 + MPMX19_04900 0.81 -0.0
351,386 + MPMX19_04900 0.81 -1.7
351,386 + MPMX19_04900 0.81 -0.3
351,387 - MPMX19_04900 0.81 -0.1
351,387 - MPMX19_04900 0.81 -0.2
351,387 - MPMX19_04900 0.81 +0.0
351,387 - MPMX19_04900 0.81 +0.3
351,387 - MPMX19_04900 0.81 -1.3
351,387 - MPMX19_04900 0.81 -1.2
351,530 + MPMX19_04900 0.87 -1.7
351,530 + MPMX19_04900 0.87 -0.8
351,530 + MPMX19_04900 0.87 -2.0
351,530 + MPMX19_04900 0.87 +0.7
351,530 + MPMX19_04900 0.87 -1.4
351,530 + MPMX19_04900 0.87 +0.7
351,530 + MPMX19_04900 0.87 -0.3
351,531 - MPMX19_04900 0.87 -0.1
351,531 - MPMX19_04900 0.87 -0.8
351,531 - MPMX19_04900 0.87 -0.5
351,531 - MPMX19_04900 0.87 -0.6
352,255 + MPMX19_04901 0.34 +1.0
352,255 + MPMX19_04901 0.34 -0.3
352,255 + MPMX19_04901 0.34 -0.5
352,255 + MPMX19_04901 0.34 -0.8
352,256 - MPMX19_04901 0.34 -0.1
352,256 - MPMX19_04901 0.34 -1.1
352,256 - MPMX19_04901 0.34 +1.2
352,256 - MPMX19_04901 0.34 -0.7
352,256 - MPMX19_04901 0.34 +0.4
352,256 - MPMX19_04901 0.34 -0.3
352,256 - MPMX19_04901 0.34 -0.4
352,528 + MPMX19_04901 0.58 +0.5
352,528 + MPMX19_04901 0.58 -1.1
352,528 + MPMX19_04901 0.58 -0.1
352,528 + MPMX19_04901 0.58 +0.2
352,528 + MPMX19_04901 0.58 -0.6
352,528 + MPMX19_04901 0.58 +0.4
352,528 + MPMX19_04901 0.58 +1.0
352,529 - MPMX19_04901 0.58 -0.3
352,529 - MPMX19_04901 0.58 -2.1
352,529 - MPMX19_04901 0.58 -0.0
352,529 - MPMX19_04901 0.58 -0.7
352,529 - MPMX19_04901 0.58 +0.2
352,529 - MPMX19_04901 0.58 -0.2
352,529 - MPMX19_04901 0.58 -2.0
352,570 + MPMX19_04901 0.62 -0.3
352,570 + MPMX19_04901 0.62 -0.5
352,570 + MPMX19_04901 0.62 +1.3
352,570 + MPMX19_04901 0.62 -0.7
352,571 - MPMX19_04901 0.62 +0.4
352,582 + MPMX19_04901 0.63 -1.4
352,582 + MPMX19_04901 0.63 +0.2
352,583 - MPMX19_04901 0.63 +1.7
352,583 - MPMX19_04901 0.63 +0.3
352,583 - MPMX19_04901 0.63 -0.8
352,735 + MPMX19_04901 0.77 -1.0
353,160 + MPMX19_04902 0.34 -1.0
353,160 + MPMX19_04902 0.34 -1.4
353,160 + MPMX19_04902 0.34 -1.6
353,161 - MPMX19_04902 0.34 +0.7
353,161 - MPMX19_04902 0.34 -1.4
353,161 - MPMX19_04902 0.34 -1.5
353,196 + MPMX19_04902 0.41 +0.7
353,196 + MPMX19_04902 0.41 +0.3
353,196 + MPMX19_04902 0.41 -0.8
353,197 - MPMX19_04902 0.42 +0.6
353,289 + MPMX19_04902 0.61 -0.3
353,341 - MPMX19_04902 0.72 +0.6
353,341 - MPMX19_04902 0.72 -2.1
353,341 - MPMX19_04902 0.72 +1.2
353,341 - MPMX19_04902 0.72 -0.8
353,502 + +0.9
353,502 + +0.0
353,507 - +0.2
353,507 - +1.0
353,599 + -0.5
353,599 + -0.4
353,599 + -0.4
353,599 + +0.2
353,599 + -2.3
353,599 + -1.6
353,599 + -0.9
353,599 + -0.6
353,599 + -0.6
353,599 + +0.3
353,599 + -0.1
353,599 + +0.7
353,599 + -0.4
353,599 + -0.1
353,600 - +0.8
353,600 - -0.1
353,600 - -2.0
353,600 - -0.7
353,600 - -0.3
353,600 - +1.1
353,600 - -0.5
353,600 - -0.7
353,600 - -0.4
353,600 - +0.0
353,600 - +0.7
353,600 - -0.4
353,600 - -0.8
353,651 + +0.9
353,651 + -1.9
353,651 + -2.0
353,651 + +0.4
353,651 + -0.6
353,652 - +0.0
353,652 - +0.7
353,652 - -1.1
353,652 - -1.6
353,652 - -0.5
353,759 + -0.4
353,759 + +1.3
353,759 + -0.1
353,759 + -0.9
353,760 - +1.1
353,760 - +0.2
353,760 - +1.7
353,833 + MPMX19_04903 0.10 +0.2
353,833 + MPMX19_04903 0.10 -0.8
353,833 + MPMX19_04903 0.10 -2.8
353,833 + MPMX19_04903 0.10 -1.1
353,834 - MPMX19_04903 0.11 -2.1
353,834 - MPMX19_04903 0.11 -1.1
353,852 - MPMX19_04903 0.20 +1.2
353,852 - MPMX19_04903 0.20 +0.2
353,904 + MPMX19_04903 0.48 +0.5
353,904 + MPMX19_04903 0.48 -1.1
353,904 + MPMX19_04903 0.48 +0.3
353,905 - MPMX19_04903 0.48 -0.2
353,905 - MPMX19_04903 0.48 +0.7
353,905 - MPMX19_04903 0.48 -0.7
353,905 - MPMX19_04903 0.48 -0.5
353,905 - MPMX19_04903 0.48 +0.7
353,905 - MPMX19_04903 0.48 -0.3
353,994 + +0.4
353,994 + +0.7
353,994 + -0.6
353,994 + -1.3
353,994 + +0.6
353,994 + -0.9
353,994 + +0.6
353,994 + -1.4
353,994 + -1.1
353,994 + -0.8
353,994 + -0.8
353,994 + -0.7
353,994 + +0.5
353,994 + -2.3
353,994 + -0.7
353,994 + +0.9
353,994 + -1.0
353,995 - -0.3
353,995 - -0.4
353,995 - +0.1
353,995 - +0.9
353,995 - -1.4
353,995 - -0.2
353,995 - -1.0
353,995 - +0.7
353,995 - -0.8
353,995 - -0.4
353,995 - +1.3
354,000 + +0.2
354,000 + -0.0
354,000 + +0.5
354,000 + +0.4

Or see this region's nucleotide sequence