Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04880

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04878 and MPMX19_04879 are separated by 293 nucleotidesMPMX19_04879 and MPMX19_04880 are separated by 127 nucleotidesMPMX19_04880 and MPMX19_04881 overlap by 4 nucleotidesMPMX19_04881 and MPMX19_04882 overlap by 4 nucleotides MPMX19_04878: MPMX19_04878 - Agmatine deiminase, at 322,211 to 323,254 _04878 MPMX19_04879: MPMX19_04879 - hypothetical protein, at 323,548 to 323,670 _04879 MPMX19_04880: MPMX19_04880 - Inner membrane ABC transporter permease protein YdcV, at 323,798 to 324,631 _04880 MPMX19_04881: MPMX19_04881 - Putrescine transport system permease protein PotH, at 324,628 to 325,572 _04881 MPMX19_04882: MPMX19_04882 - Spermidine/putrescine import ATP-binding protein PotA, at 325,569 to 326,732 _04882 Position (kb) 323 324 325Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.875 kb on + strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 322.876 kb on - strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.097 kb on + strand, within MPMX19_04878at 323.098 kb on - strand, within MPMX19_04878at 323.268 kb on + strandat 323.269 kb on - strandat 323.438 kb on + strandat 323.438 kb on + strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.439 kb on - strandat 323.550 kb on - strandat 323.606 kb on + strand, within MPMX19_04879at 323.607 kb on - strand, within MPMX19_04879at 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.708 kb on + strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.709 kb on - strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.768 kb on + strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 323.769 kb on - strandat 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.186 kb on + strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.187 kb on - strand, within MPMX19_04880at 324.492 kb on + strand, within MPMX19_04880at 324.492 kb on + strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.493 kb on - strand, within MPMX19_04880at 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.576 kb on + strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.577 kb on - strandat 324.589 kb on - strandat 324.589 kb on - strandat 324.589 kb on - strandat 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.998 kb on + strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 324.999 kb on - strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.004 kb on + strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.005 kb on - strand, within MPMX19_04881at 325.019 kb on + strand, within MPMX19_04881at 325.019 kb on + strand, within MPMX19_04881at 325.019 kb on + strand, within MPMX19_04881at 325.019 kb on + strand, within MPMX19_04881at 325.020 kb on - strand, within MPMX19_04881at 325.020 kb on - strand, within MPMX19_04881at 325.020 kb on - strand, within MPMX19_04881at 325.020 kb on - strand, within MPMX19_04881at 325.038 kb on - strand, within MPMX19_04881at 325.127 kb on + strand, within MPMX19_04881at 325.127 kb on + strand, within MPMX19_04881at 325.127 kb on + strand, within MPMX19_04881at 325.127 kb on + strand, within MPMX19_04881at 325.127 kb on + strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.128 kb on - strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.217 kb on + strand, within MPMX19_04881at 325.218 kb on - strand, within MPMX19_04881at 325.218 kb on - strand, within MPMX19_04881at 325.218 kb on - strand, within MPMX19_04881at 325.218 kb on - strand, within MPMX19_04881at 325.286 kb on + strand, within MPMX19_04881at 325.286 kb on + strand, within MPMX19_04881at 325.298 kb on + strand, within MPMX19_04881at 325.298 kb on + strand, within MPMX19_04881at 325.298 kb on + strand, within MPMX19_04881at 325.298 kb on + strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.299 kb on - strand, within MPMX19_04881at 325.325 kb on + strand, within MPMX19_04881at 325.325 kb on + strand, within MPMX19_04881at 325.325 kb on + strand, within MPMX19_04881at 325.325 kb on + strand, within MPMX19_04881at 325.326 kb on - strand, within MPMX19_04881at 325.326 kb on - strand, within MPMX19_04881at 325.404 kb on - strand, within MPMX19_04881at 325.490 kb on + strandat 325.490 kb on + strandat 325.490 kb on + strandat 325.491 kb on - strandat 325.491 kb on - strandat 325.491 kb on - strandat 325.491 kb on - strandat 325.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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322,875 + MPMX19_04878 0.64 -0.2
322,875 + MPMX19_04878 0.64 -0.4
322,875 + MPMX19_04878 0.64 -1.1
322,875 + MPMX19_04878 0.64 -0.9
322,875 + MPMX19_04878 0.64 -1.0
322,875 + MPMX19_04878 0.64 -1.0
322,876 - MPMX19_04878 0.64 +0.4
322,876 - MPMX19_04878 0.64 -0.3
322,876 - MPMX19_04878 0.64 -0.4
322,876 - MPMX19_04878 0.64 -0.5
322,876 - MPMX19_04878 0.64 +1.2
322,876 - MPMX19_04878 0.64 +0.1
322,876 - MPMX19_04878 0.64 -0.7
322,876 - MPMX19_04878 0.64 -0.2
323,097 + MPMX19_04878 0.85 +1.2
323,097 + MPMX19_04878 0.85 -0.3
323,097 + MPMX19_04878 0.85 +1.2
323,097 + MPMX19_04878 0.85 -1.2
323,097 + MPMX19_04878 0.85 -0.3
323,098 - MPMX19_04878 0.85 +0.7
323,268 + -0.3
323,269 - -0.4
323,438 + +0.3
323,438 + +1.0
323,439 - -0.3
323,439 - +0.0
323,439 - -0.6
323,439 - -1.8
323,550 - +0.3
323,606 + MPMX19_04879 0.47 +1.7
323,607 - MPMX19_04879 0.48 +0.3
323,708 + +0.4
323,708 + -1.8
323,708 + -1.3
323,708 + +0.4
323,709 - -0.9
323,709 - -0.6
323,709 - -0.3
323,709 - -0.4
323,709 - +0.4
323,709 - +0.0
323,709 - -0.4
323,768 + -0.8
323,768 + -1.0
323,768 + -0.6
323,768 + +0.2
323,768 + +0.5
323,768 + -2.4
323,768 + -0.1
323,768 + -0.0
323,768 + +0.1
323,768 + -1.6
323,768 + +1.0
323,769 - +0.3
323,769 - -0.6
323,769 - +0.3
323,769 - -2.1
323,769 - -0.7
324,186 + MPMX19_04880 0.47 -0.5
324,186 + MPMX19_04880 0.47 -0.1
324,186 + MPMX19_04880 0.47 +0.2
324,186 + MPMX19_04880 0.47 -2.6
324,186 + MPMX19_04880 0.47 -1.1
324,186 + MPMX19_04880 0.47 +0.5
324,186 + MPMX19_04880 0.47 -1.1
324,186 + MPMX19_04880 0.47 +1.6
324,186 + MPMX19_04880 0.47 -1.3
324,186 + MPMX19_04880 0.47 -1.8
324,186 + MPMX19_04880 0.47 -0.4
324,187 - MPMX19_04880 0.47 -0.6
324,187 - MPMX19_04880 0.47 -0.6
324,187 - MPMX19_04880 0.47 -1.4
324,187 - MPMX19_04880 0.47 -0.3
324,187 - MPMX19_04880 0.47 +0.2
324,187 - MPMX19_04880 0.47 +0.1
324,187 - MPMX19_04880 0.47 -1.7
324,187 - MPMX19_04880 0.47 -0.3
324,187 - MPMX19_04880 0.47 +0.3
324,187 - MPMX19_04880 0.47 -0.7
324,187 - MPMX19_04880 0.47 +0.4
324,187 - MPMX19_04880 0.47 -0.4
324,492 + MPMX19_04880 0.83 +1.7
324,492 + MPMX19_04880 0.83 +0.2
324,493 - MPMX19_04880 0.83 -1.3
324,493 - MPMX19_04880 0.83 -0.7
324,493 - MPMX19_04880 0.83 -1.8
324,493 - MPMX19_04880 0.83 -1.7
324,493 - MPMX19_04880 0.83 -0.3
324,576 + +0.7
324,576 + -0.6
324,576 + -1.1
324,576 + +0.7
324,576 + -0.8
324,576 + +0.5
324,577 - +0.2
324,577 - -0.8
324,577 - -1.4
324,577 - -0.4
324,577 - -0.1
324,577 - -2.8
324,577 - +0.2
324,577 - -0.6
324,577 - +0.2
324,577 - -0.2
324,589 - -0.7
324,589 - -1.1
324,589 - -0.6
324,998 + MPMX19_04881 0.39 -1.3
324,998 + MPMX19_04881 0.39 -1.6
324,998 + MPMX19_04881 0.39 -0.3
324,998 + MPMX19_04881 0.39 +0.5
324,998 + MPMX19_04881 0.39 -0.7
324,998 + MPMX19_04881 0.39 -0.4
324,998 + MPMX19_04881 0.39 -0.2
324,999 - MPMX19_04881 0.39 +0.7
324,999 - MPMX19_04881 0.39 +0.7
324,999 - MPMX19_04881 0.39 +0.2
324,999 - MPMX19_04881 0.39 -0.6
324,999 - MPMX19_04881 0.39 +0.0
324,999 - MPMX19_04881 0.39 +1.0
324,999 - MPMX19_04881 0.39 +1.5
325,004 + MPMX19_04881 0.40 +0.3
325,004 + MPMX19_04881 0.40 -0.8
325,004 + MPMX19_04881 0.40 -0.6
325,004 + MPMX19_04881 0.40 -0.8
325,004 + MPMX19_04881 0.40 +0.2
325,004 + MPMX19_04881 0.40 -0.6
325,004 + MPMX19_04881 0.40 +0.3
325,004 + MPMX19_04881 0.40 -0.3
325,004 + MPMX19_04881 0.40 -0.3
325,004 + MPMX19_04881 0.40 +0.7
325,004 + MPMX19_04881 0.40 -0.3
325,004 + MPMX19_04881 0.40 -0.4
325,004 + MPMX19_04881 0.40 -0.4
325,004 + MPMX19_04881 0.40 +0.4
325,004 + MPMX19_04881 0.40 -0.4
325,004 + MPMX19_04881 0.40 +0.7
325,004 + MPMX19_04881 0.40 -0.6
325,004 + MPMX19_04881 0.40 -0.3
325,004 + MPMX19_04881 0.40 +0.3
325,004 + MPMX19_04881 0.40 +1.3
325,004 + MPMX19_04881 0.40 +1.2
325,004 + MPMX19_04881 0.40 -0.6
325,005 - MPMX19_04881 0.40 +0.2
325,005 - MPMX19_04881 0.40 +1.2
325,005 - MPMX19_04881 0.40 -1.4
325,005 - MPMX19_04881 0.40 -0.7
325,005 - MPMX19_04881 0.40 -1.1
325,005 - MPMX19_04881 0.40 -0.7
325,005 - MPMX19_04881 0.40 -1.7
325,005 - MPMX19_04881 0.40 -0.6
325,005 - MPMX19_04881 0.40 +0.2
325,005 - MPMX19_04881 0.40 +0.7
325,005 - MPMX19_04881 0.40 -1.1
325,005 - MPMX19_04881 0.40 -0.8
325,005 - MPMX19_04881 0.40 -0.6
325,005 - MPMX19_04881 0.40 -1.1
325,019 + MPMX19_04881 0.41 -3.0
325,019 + MPMX19_04881 0.41 -1.1
325,019 + MPMX19_04881 0.41 +2.0
325,019 + MPMX19_04881 0.41 +0.6
325,020 - MPMX19_04881 0.41 -0.6
325,020 - MPMX19_04881 0.41 -1.6
325,020 - MPMX19_04881 0.41 -1.1
325,020 - MPMX19_04881 0.41 -2.3
325,038 - MPMX19_04881 0.43 -1.1
325,127 + MPMX19_04881 0.53 -0.1
325,127 + MPMX19_04881 0.53 -0.8
325,127 + MPMX19_04881 0.53 -0.8
325,127 + MPMX19_04881 0.53 -0.3
325,127 + MPMX19_04881 0.53 +1.5
325,128 - MPMX19_04881 0.53 +0.5
325,128 - MPMX19_04881 0.53 -0.6
325,128 - MPMX19_04881 0.53 +0.3
325,128 - MPMX19_04881 0.53 -0.6
325,128 - MPMX19_04881 0.53 -1.1
325,128 - MPMX19_04881 0.53 -0.1
325,128 - MPMX19_04881 0.53 -0.6
325,128 - MPMX19_04881 0.53 -1.6
325,217 + MPMX19_04881 0.62 -0.8
325,217 + MPMX19_04881 0.62 +2.2
325,217 + MPMX19_04881 0.62 -0.6
325,217 + MPMX19_04881 0.62 +1.5
325,217 + MPMX19_04881 0.62 +0.3
325,217 + MPMX19_04881 0.62 -0.1
325,217 + MPMX19_04881 0.62 +1.6
325,217 + MPMX19_04881 0.62 -1.4
325,218 - MPMX19_04881 0.62 -0.9
325,218 - MPMX19_04881 0.62 +0.0
325,218 - MPMX19_04881 0.62 +1.7
325,218 - MPMX19_04881 0.62 +0.2
325,286 + MPMX19_04881 0.70 -2.1
325,286 + MPMX19_04881 0.70 -0.1
325,298 + MPMX19_04881 0.71 -0.3
325,298 + MPMX19_04881 0.71 +0.5
325,298 + MPMX19_04881 0.71 +0.2
325,298 + MPMX19_04881 0.71 -2.0
325,299 - MPMX19_04881 0.71 -0.1
325,299 - MPMX19_04881 0.71 -0.1
325,299 - MPMX19_04881 0.71 -2.1
325,299 - MPMX19_04881 0.71 -0.4
325,299 - MPMX19_04881 0.71 +0.2
325,299 - MPMX19_04881 0.71 -0.8
325,299 - MPMX19_04881 0.71 -0.1
325,299 - MPMX19_04881 0.71 +0.3
325,299 - MPMX19_04881 0.71 -0.5
325,299 - MPMX19_04881 0.71 +0.7
325,299 - MPMX19_04881 0.71 -0.8
325,299 - MPMX19_04881 0.71 -1.1
325,325 + MPMX19_04881 0.74 +0.7
325,325 + MPMX19_04881 0.74 -2.2
325,325 + MPMX19_04881 0.74 +0.4
325,325 + MPMX19_04881 0.74 +1.7
325,326 - MPMX19_04881 0.74 -1.7
325,326 - MPMX19_04881 0.74 -1.3
325,404 - MPMX19_04881 0.82 -0.3
325,490 + +0.6
325,490 + -1.0
325,490 + -1.4
325,491 - +0.7
325,491 - +0.2
325,491 - +0.6
325,491 - +0.2
325,491 - +0.5

Or see this region's nucleotide sequence