Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04873

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04872 and MPMX19_04873 are separated by 19 nucleotidesMPMX19_04873 and MPMX19_04874 are separated by 20 nucleotidesMPMX19_04874 and MPMX19_04875 are separated by 26 nucleotides MPMX19_04872: MPMX19_04872 - hypothetical protein, at 315,773 to 317,494 _04872 MPMX19_04873: MPMX19_04873 - hypothetical protein, at 317,514 to 318,059 _04873 MPMX19_04874: MPMX19_04874 - hypothetical protein, at 318,080 to 318,454 _04874 MPMX19_04875: MPMX19_04875 - Sensor histidine kinase WalK, at 318,481 to 319,428 _04875 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.532 kb on + strand, within MPMX19_04872at 316.533 kb on - strand, within MPMX19_04872at 316.533 kb on - strand, within MPMX19_04872at 316.637 kb on + strand, within MPMX19_04872at 316.638 kb on - strand, within MPMX19_04872at 316.638 kb on - strand, within MPMX19_04872at 317.207 kb on + strand, within MPMX19_04872at 317.207 kb on + strand, within MPMX19_04872at 317.207 kb on + strand, within MPMX19_04872at 317.207 kb on + strand, within MPMX19_04872at 317.207 kb on + strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.208 kb on - strand, within MPMX19_04872at 317.510 kb on + strandat 317.511 kb on - strandat 317.511 kb on - strandat 317.511 kb on - strandat 317.511 kb on - strandat 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.688 kb on + strand, within MPMX19_04873at 317.689 kb on + strand, within MPMX19_04873at 317.689 kb on - strand, within MPMX19_04873at 317.689 kb on - strand, within MPMX19_04873at 317.689 kb on - strand, within MPMX19_04873at 317.689 kb on - strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.718 kb on + strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.719 kb on - strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.799 kb on + strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.800 kb on - strand, within MPMX19_04873at 317.893 kb on + strand, within MPMX19_04873at 317.894 kb on - strand, within MPMX19_04873at 317.894 kb on - strand, within MPMX19_04873at 317.894 kb on - strand, within MPMX19_04873at 317.904 kb on + strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 317.905 kb on - strand, within MPMX19_04873at 318.000 kb on + strand, within MPMX19_04873at 318.000 kb on + strand, within MPMX19_04873at 318.000 kb on + strand, within MPMX19_04873at 318.000 kb on + strand, within MPMX19_04873at 318.001 kb on - strand, within MPMX19_04873at 318.027 kb on + strandat 318.027 kb on + strandat 318.055 kb on + strandat 318.055 kb on + strandat 318.055 kb on + strandat 318.055 kb on + strandat 318.056 kb on - strandat 318.057 kb on + strandat 318.073 kb on - strandat 318.073 kb on - strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.078 kb on + strandat 318.079 kb on - strandat 318.079 kb on - strandat 318.079 kb on - strandat 318.079 kb on - strandat 318.079 kb on - strandat 318.079 kb on - strandat 318.171 kb on - strand, within MPMX19_04874at 318.194 kb on + strand, within MPMX19_04874at 318.195 kb on - strand, within MPMX19_04874at 318.224 kb on + strand, within MPMX19_04874at 318.224 kb on + strand, within MPMX19_04874at 318.224 kb on + strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.225 kb on - strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.272 kb on + strand, within MPMX19_04874at 318.273 kb on - strand, within MPMX19_04874at 318.273 kb on - strand, within MPMX19_04874at 318.273 kb on - strand, within MPMX19_04874at 318.368 kb on + strand, within MPMX19_04874at 318.368 kb on + strand, within MPMX19_04874at 318.368 kb on + strand, within MPMX19_04874at 318.369 kb on - strand, within MPMX19_04874at 318.369 kb on - strand, within MPMX19_04874at 318.369 kb on - strand, within MPMX19_04874at 318.369 kb on - strand, within MPMX19_04874at 318.369 kb on - strand, within MPMX19_04874at 319.051 kb on + strand, within MPMX19_04875at 319.051 kb on + strand, within MPMX19_04875at 319.051 kb on + strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875at 319.052 kb on - strand, within MPMX19_04875

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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316,532 + MPMX19_04872 0.44 -0.3
316,532 + MPMX19_04872 0.44 -0.7
316,532 + MPMX19_04872 0.44 -0.7
316,532 + MPMX19_04872 0.44 -0.5
316,532 + MPMX19_04872 0.44 +0.2
316,532 + MPMX19_04872 0.44 -0.6
316,532 + MPMX19_04872 0.44 -1.2
316,532 + MPMX19_04872 0.44 -1.0
316,533 - MPMX19_04872 0.44 +0.4
316,533 - MPMX19_04872 0.44 +0.3
316,637 + MPMX19_04872 0.50 -0.8
316,638 - MPMX19_04872 0.50 -1.9
316,638 - MPMX19_04872 0.50 +1.1
317,207 + MPMX19_04872 0.83 -0.4
317,207 + MPMX19_04872 0.83 +0.1
317,207 + MPMX19_04872 0.83 -0.4
317,207 + MPMX19_04872 0.83 -1.0
317,207 + MPMX19_04872 0.83 -2.9
317,208 - MPMX19_04872 0.83 +0.5
317,208 - MPMX19_04872 0.83 -0.7
317,208 - MPMX19_04872 0.83 +1.1
317,208 - MPMX19_04872 0.83 -0.6
317,208 - MPMX19_04872 0.83 -0.2
317,208 - MPMX19_04872 0.83 -0.6
317,208 - MPMX19_04872 0.83 +1.5
317,208 - MPMX19_04872 0.83 +0.3
317,510 + +0.2
317,511 - -0.6
317,511 - -0.9
317,511 - -1.4
317,511 - +0.3
317,688 + MPMX19_04873 0.32 -1.6
317,688 + MPMX19_04873 0.32 -1.4
317,688 + MPMX19_04873 0.32 +0.4
317,688 + MPMX19_04873 0.32 -0.6
317,688 + MPMX19_04873 0.32 -1.2
317,688 + MPMX19_04873 0.32 -0.9
317,688 + MPMX19_04873 0.32 -0.8
317,689 + MPMX19_04873 0.32 -1.0
317,689 - MPMX19_04873 0.32 -1.1
317,689 - MPMX19_04873 0.32 -0.7
317,689 - MPMX19_04873 0.32 +0.1
317,689 - MPMX19_04873 0.32 +1.7
317,718 + MPMX19_04873 0.37 -0.6
317,718 + MPMX19_04873 0.37 -0.4
317,718 + MPMX19_04873 0.37 -0.7
317,718 + MPMX19_04873 0.37 +0.1
317,718 + MPMX19_04873 0.37 -1.4
317,718 + MPMX19_04873 0.37 -0.6
317,719 - MPMX19_04873 0.38 -0.7
317,719 - MPMX19_04873 0.38 -1.0
317,719 - MPMX19_04873 0.38 +0.6
317,719 - MPMX19_04873 0.38 -2.5
317,719 - MPMX19_04873 0.38 -0.2
317,719 - MPMX19_04873 0.38 -0.0
317,719 - MPMX19_04873 0.38 -0.6
317,799 + MPMX19_04873 0.52 +1.0
317,799 + MPMX19_04873 0.52 -1.7
317,799 + MPMX19_04873 0.52 -0.6
317,799 + MPMX19_04873 0.52 +0.7
317,799 + MPMX19_04873 0.52 +0.1
317,799 + MPMX19_04873 0.52 +0.1
317,799 + MPMX19_04873 0.52 -1.6
317,799 + MPMX19_04873 0.52 -1.6
317,799 + MPMX19_04873 0.52 -0.1
317,799 + MPMX19_04873 0.52 -1.7
317,800 - MPMX19_04873 0.52 -0.5
317,800 - MPMX19_04873 0.52 -0.4
317,800 - MPMX19_04873 0.52 -0.4
317,800 - MPMX19_04873 0.52 -1.0
317,800 - MPMX19_04873 0.52 -1.9
317,800 - MPMX19_04873 0.52 -0.6
317,800 - MPMX19_04873 0.52 -1.3
317,800 - MPMX19_04873 0.52 -0.8
317,800 - MPMX19_04873 0.52 +0.1
317,800 - MPMX19_04873 0.52 +0.4
317,800 - MPMX19_04873 0.52 -0.3
317,893 + MPMX19_04873 0.69 -0.4
317,894 - MPMX19_04873 0.70 +0.5
317,894 - MPMX19_04873 0.70 -0.9
317,894 - MPMX19_04873 0.70 -0.9
317,904 + MPMX19_04873 0.71 -2.7
317,905 - MPMX19_04873 0.72 -0.3
317,905 - MPMX19_04873 0.72 +0.1
317,905 - MPMX19_04873 0.72 -0.9
317,905 - MPMX19_04873 0.72 -1.2
317,905 - MPMX19_04873 0.72 -2.0
317,905 - MPMX19_04873 0.72 +0.3
318,000 + MPMX19_04873 0.89 -2.4
318,000 + MPMX19_04873 0.89 -1.4
318,000 + MPMX19_04873 0.89 -0.9
318,000 + MPMX19_04873 0.89 -0.4
318,001 - MPMX19_04873 0.89 -1.3
318,027 + -1.2
318,027 + -0.2
318,055 + -1.1
318,055 + +0.9
318,055 + -0.8
318,055 + -1.4
318,056 - +0.7
318,057 + -0.2
318,073 - +0.7
318,073 - -0.1
318,078 + +0.6
318,078 + -0.2
318,078 + -0.3
318,078 + -0.6
318,078 + -0.3
318,078 + -0.4
318,078 + -1.1
318,079 - -0.4
318,079 - -0.4
318,079 - +0.2
318,079 - +0.2
318,079 - -1.3
318,079 - -0.8
318,171 - MPMX19_04874 0.24 +0.2
318,194 + MPMX19_04874 0.30 +0.7
318,195 - MPMX19_04874 0.31 -0.7
318,224 + MPMX19_04874 0.38 +0.4
318,224 + MPMX19_04874 0.38 +1.7
318,224 + MPMX19_04874 0.38 -1.3
318,225 - MPMX19_04874 0.39 -1.8
318,225 - MPMX19_04874 0.39 -0.6
318,225 - MPMX19_04874 0.39 -1.1
318,225 - MPMX19_04874 0.39 -0.8
318,225 - MPMX19_04874 0.39 -0.8
318,225 - MPMX19_04874 0.39 -0.4
318,272 + MPMX19_04874 0.51 -0.5
318,272 + MPMX19_04874 0.51 -1.0
318,272 + MPMX19_04874 0.51 +0.3
318,272 + MPMX19_04874 0.51 -0.8
318,272 + MPMX19_04874 0.51 -0.8
318,272 + MPMX19_04874 0.51 -0.6
318,273 - MPMX19_04874 0.51 -0.6
318,273 - MPMX19_04874 0.51 -0.3
318,273 - MPMX19_04874 0.51 -1.6
318,368 + MPMX19_04874 0.77 -0.4
318,368 + MPMX19_04874 0.77 -0.7
318,368 + MPMX19_04874 0.77 +0.2
318,369 - MPMX19_04874 0.77 -1.3
318,369 - MPMX19_04874 0.77 +0.7
318,369 - MPMX19_04874 0.77 -0.3
318,369 - MPMX19_04874 0.77 +1.2
318,369 - MPMX19_04874 0.77 +1.7
319,051 + MPMX19_04875 0.60 +0.2
319,051 + MPMX19_04875 0.60 -0.4
319,051 + MPMX19_04875 0.60 -0.8
319,052 - MPMX19_04875 0.60 +1.2
319,052 - MPMX19_04875 0.60 -1.2
319,052 - MPMX19_04875 0.60 -0.5

Or see this region's nucleotide sequence