Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04841 and MPMX19_04842 are separated by 202 nucleotides MPMX19_04842 and MPMX19_04843 are separated by 207 nucleotides MPMX19_04843 and MPMX19_04844 are separated by 312 nucleotides
MPMX19_04841: MPMX19_04841 - Aconitate hydratase B, at 249,552 to 252,143
_04841
MPMX19_04842: MPMX19_04842 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 252,346 to 252,873
_04842
MPMX19_04843: MPMX19_04843 - hypothetical protein, at 253,081 to 253,455
_04843
MPMX19_04844: MPMX19_04844 - HTH-type transcriptional regulator HexR, at 253,768 to 254,676
_04844
Position (kb) 253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.159 kb on - strand at 252.222 kb on - strand at 252.224 kb on - strand at 252.224 kb on - strand at 252.233 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.263 kb on - strand at 252.307 kb on - strand at 252.309 kb on + strand at 252.322 kb on + strand at 252.322 kb on + strand at 252.347 kb on + strand at 252.348 kb on - strand at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.785 kb on + strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.786 kb on - strand, within MPMX19_04842 at 252.902 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.041 kb on + strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.042 kb on - strand at 253.050 kb on + strand at 253.297 kb on + strand, within MPMX19_04843 at 253.297 kb on + strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.298 kb on - strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.306 kb on + strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.307 kb on - strand, within MPMX19_04843 at 253.318 kb on + strand, within MPMX19_04843 at 253.318 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.354 kb on + strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.355 kb on - strand, within MPMX19_04843 at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.420 kb on + strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.421 kb on - strand at 253.453 kb on + strand at 253.454 kb on - strand at 253.689 kb on + strand at 253.690 kb on - strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.769 kb on + strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.770 kb on - strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.773 kb on + strand at 253.774 kb on - strand at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.150 kb on + strand, within MPMX19_04844 at 254.151 kb on - strand, within MPMX19_04844 at 254.151 kb on - strand, within MPMX19_04844 at 254.151 kb on - strand, within MPMX19_04844 at 254.151 kb on - strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.168 kb on + strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.169 kb on - strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.246 kb on + strand, within MPMX19_04844 at 254.247 kb on - strand, within MPMX19_04844 at 254.247 kb on - strand, within MPMX19_04844 at 254.247 kb on - strand, within MPMX19_04844 at 254.247 kb on - strand, within MPMX19_04844 at 254.247 kb on - strand, within MPMX19_04844
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 252,159 - -1.2 252,222 - -0.2 252,224 - +0.7 252,224 - -0.8 252,233 - -0.7 252,263 - -1.6 252,263 - -0.7 252,263 - -0.7 252,263 - -1.4 252,307 - -1.6 252,309 + -2.2 252,322 + -1.4 252,322 + -0.3 252,347 + -2.7 252,348 - -0.6 252,785 + MPMX19_04842 0.83 -0.4 252,785 + MPMX19_04842 0.83 -1.3 252,785 + MPMX19_04842 0.83 -0.4 252,785 + MPMX19_04842 0.83 -1.5 252,786 - MPMX19_04842 0.83 +0.0 252,786 - MPMX19_04842 0.83 -1.4 252,786 - MPMX19_04842 0.83 +0.3 252,902 + +0.9 253,041 + +0.7 253,041 + +0.6 253,041 + -0.1 253,041 + -0.7 253,041 + +0.4 253,041 + -1.3 253,041 + -1.9 253,041 + -0.8 253,042 - -1.7 253,042 - -0.8 253,042 - -1.4 253,042 - -0.6 253,042 - -0.6 253,042 - +1.7 253,042 - +0.4 253,050 + +0.3 253,297 + MPMX19_04843 0.58 -1.7 253,297 + MPMX19_04843 0.58 -0.6 253,298 - MPMX19_04843 0.58 -0.3 253,298 - MPMX19_04843 0.58 -0.2 253,298 - MPMX19_04843 0.58 -1.3 253,298 - MPMX19_04843 0.58 -0.9 253,306 + MPMX19_04843 0.60 -1.1 253,306 + MPMX19_04843 0.60 -0.6 253,306 + MPMX19_04843 0.60 -0.8 253,306 + MPMX19_04843 0.60 -0.7 253,306 + MPMX19_04843 0.60 +0.6 253,307 - MPMX19_04843 0.60 +0.6 253,307 - MPMX19_04843 0.60 -0.9 253,307 - MPMX19_04843 0.60 +0.3 253,307 - MPMX19_04843 0.60 -0.9 253,307 - MPMX19_04843 0.60 -0.9 253,318 + MPMX19_04843 0.63 -1.7 253,318 + MPMX19_04843 0.63 -1.1 253,354 + MPMX19_04843 0.73 -0.3 253,354 + MPMX19_04843 0.73 -1.5 253,354 + MPMX19_04843 0.73 +0.1 253,354 + MPMX19_04843 0.73 +0.8 253,354 + MPMX19_04843 0.73 -1.9 253,354 + MPMX19_04843 0.73 -0.1 253,355 - MPMX19_04843 0.73 +0.7 253,355 - MPMX19_04843 0.73 -3.2 253,355 - MPMX19_04843 0.73 -1.1 253,355 - MPMX19_04843 0.73 +0.3 253,355 - MPMX19_04843 0.73 -1.4 253,355 - MPMX19_04843 0.73 +0.7 253,355 - MPMX19_04843 0.73 -0.4 253,355 - MPMX19_04843 0.73 +0.1 253,355 - MPMX19_04843 0.73 -0.7 253,420 + +0.3 253,420 + +0.1 253,420 + -0.7 253,420 + -0.6 253,420 + -1.1 253,420 + -0.7 253,420 + -2.1 253,421 - +0.1 253,421 - -1.1 253,421 - -2.0 253,421 - -2.1 253,421 - +0.6 253,421 - -0.7 253,453 + +0.7 253,454 - -1.4 253,689 + -2.4 253,690 - -0.6 253,769 + -1.6 253,769 + -0.5 253,769 + +0.1 253,769 + +0.2 253,769 + +1.5 253,769 + -0.1 253,769 + -1.2 253,769 + -0.5 253,769 + +0.8 253,769 + +0.6 253,769 + -0.4 253,769 + -2.4 253,769 + -0.5 253,770 - -0.2 253,770 - -0.1 253,770 - -0.6 253,770 - -0.3 253,770 - -0.7 253,770 - +0.1 253,770 - -0.1 253,770 - +0.7 253,770 - +0.3 253,770 - -1.1 253,770 - +0.4 253,773 + +1.4 253,773 + -0.5 253,773 + -2.6 253,773 + -0.6 253,773 + +0.1 253,773 + -0.4 253,774 - -0.4 254,150 + MPMX19_04844 0.42 -0.2 254,150 + MPMX19_04844 0.42 -1.2 254,150 + MPMX19_04844 0.42 -1.4 254,150 + MPMX19_04844 0.42 -0.5 254,150 + MPMX19_04844 0.42 -1.3 254,150 + MPMX19_04844 0.42 -0.9 254,150 + MPMX19_04844 0.42 -0.9 254,151 - MPMX19_04844 0.42 -0.6 254,151 - MPMX19_04844 0.42 +0.4 254,151 - MPMX19_04844 0.42 -1.7 254,151 - MPMX19_04844 0.42 -0.8 254,168 + MPMX19_04844 0.44 -1.1 254,168 + MPMX19_04844 0.44 +1.1 254,168 + MPMX19_04844 0.44 +1.2 254,168 + MPMX19_04844 0.44 -0.9 254,168 + MPMX19_04844 0.44 -0.0 254,168 + MPMX19_04844 0.44 -1.7 254,168 + MPMX19_04844 0.44 -0.0 254,168 + MPMX19_04844 0.44 -0.6 254,168 + MPMX19_04844 0.44 +1.3 254,168 + MPMX19_04844 0.44 -0.7 254,168 + MPMX19_04844 0.44 +0.4 254,169 - MPMX19_04844 0.44 +0.1 254,169 - MPMX19_04844 0.44 -2.7 254,169 - MPMX19_04844 0.44 -1.5 254,169 - MPMX19_04844 0.44 -0.6 254,169 - MPMX19_04844 0.44 +0.5 254,169 - MPMX19_04844 0.44 +0.6 254,169 - MPMX19_04844 0.44 -0.3 254,246 + MPMX19_04844 0.53 -1.4 254,246 + MPMX19_04844 0.53 +0.9 254,246 + MPMX19_04844 0.53 -0.3 254,246 + MPMX19_04844 0.53 -0.6 254,246 + MPMX19_04844 0.53 -0.7 254,246 + MPMX19_04844 0.53 +0.1 254,247 - MPMX19_04844 0.53 -2.5 254,247 - MPMX19_04844 0.53 -1.3 254,247 - MPMX19_04844 0.53 -0.8 254,247 - MPMX19_04844 0.53 -0.3 254,247 - MPMX19_04844 0.53 +0.9
Or see this region's nucleotide sequence