Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04841

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04840 and MPMX19_04841 are separated by 268 nucleotidesMPMX19_04841 and MPMX19_04842 are separated by 202 nucleotidesMPMX19_04842 and MPMX19_04843 are separated by 207 nucleotides MPMX19_04840: MPMX19_04840 - Leu/Ile/Val-binding protein, at 248,174 to 249,283 _04840 MPMX19_04841: MPMX19_04841 - Aconitate hydratase B, at 249,552 to 252,143 _04841 MPMX19_04842: MPMX19_04842 - Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase, at 252,346 to 252,873 _04842 MPMX19_04843: MPMX19_04843 - hypothetical protein, at 253,081 to 253,455 _04843 Position (kb) 249 250 251 252 253Strain fitness (log2 ratio) -2 -1 0 1at 248.622 kb on + strand, within MPMX19_04840at 248.622 kb on + strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.623 kb on - strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.625 kb on + strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.626 kb on - strand, within MPMX19_04840at 248.707 kb on - strand, within MPMX19_04840at 248.769 kb on + strand, within MPMX19_04840at 248.769 kb on + strand, within MPMX19_04840at 248.770 kb on - strand, within MPMX19_04840at 248.770 kb on - strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.826 kb on + strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.827 kb on - strand, within MPMX19_04840at 248.952 kb on + strand, within MPMX19_04840at 248.952 kb on + strand, within MPMX19_04840at 248.953 kb on - strand, within MPMX19_04840at 248.953 kb on - strand, within MPMX19_04840at 249.147 kb on + strand, within MPMX19_04840at 249.147 kb on + strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.148 kb on - strand, within MPMX19_04840at 249.204 kb on - strandat 249.204 kb on - strandat 249.204 kb on - strandat 249.204 kb on - strandat 249.323 kb on - strandat 249.530 kb on + strandat 249.550 kb on + strandat 249.550 kb on + strandat 252.159 kb on - strandat 252.222 kb on - strandat 252.224 kb on - strandat 252.224 kb on - strandat 252.233 kb on - strandat 252.263 kb on - strandat 252.263 kb on - strandat 252.263 kb on - strandat 252.263 kb on - strandat 252.307 kb on - strandat 252.309 kb on + strandat 252.322 kb on + strandat 252.322 kb on + strandat 252.347 kb on + strandat 252.348 kb on - strandat 252.785 kb on + strand, within MPMX19_04842at 252.785 kb on + strand, within MPMX19_04842at 252.785 kb on + strand, within MPMX19_04842at 252.785 kb on + strand, within MPMX19_04842at 252.786 kb on - strand, within MPMX19_04842at 252.786 kb on - strand, within MPMX19_04842at 252.786 kb on - strand, within MPMX19_04842at 252.902 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.041 kb on + strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.042 kb on - strandat 253.050 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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248,622 + MPMX19_04840 0.40 +0.7
248,622 + MPMX19_04840 0.40 -1.6
248,623 - MPMX19_04840 0.40 -1.2
248,623 - MPMX19_04840 0.40 -0.4
248,623 - MPMX19_04840 0.40 -0.6
248,625 + MPMX19_04840 0.41 +0.9
248,625 + MPMX19_04840 0.41 +0.1
248,625 + MPMX19_04840 0.41 -2.0
248,625 + MPMX19_04840 0.41 +0.7
248,626 - MPMX19_04840 0.41 -0.9
248,626 - MPMX19_04840 0.41 -0.8
248,626 - MPMX19_04840 0.41 -0.3
248,707 - MPMX19_04840 0.48 +0.5
248,769 + MPMX19_04840 0.54 -0.8
248,769 + MPMX19_04840 0.54 -2.1
248,770 - MPMX19_04840 0.54 +0.4
248,770 - MPMX19_04840 0.54 -0.3
248,826 + MPMX19_04840 0.59 -0.9
248,826 + MPMX19_04840 0.59 -0.4
248,826 + MPMX19_04840 0.59 -0.1
248,826 + MPMX19_04840 0.59 +0.4
248,826 + MPMX19_04840 0.59 -1.5
248,826 + MPMX19_04840 0.59 -0.9
248,826 + MPMX19_04840 0.59 -0.0
248,826 + MPMX19_04840 0.59 -0.7
248,826 + MPMX19_04840 0.59 +0.2
248,826 + MPMX19_04840 0.59 -0.2
248,826 + MPMX19_04840 0.59 +1.1
248,827 - MPMX19_04840 0.59 -0.4
248,827 - MPMX19_04840 0.59 -0.7
248,827 - MPMX19_04840 0.59 +0.5
248,827 - MPMX19_04840 0.59 +0.5
248,827 - MPMX19_04840 0.59 -1.3
248,827 - MPMX19_04840 0.59 -0.9
248,827 - MPMX19_04840 0.59 -0.3
248,827 - MPMX19_04840 0.59 +0.7
248,827 - MPMX19_04840 0.59 -0.9
248,952 + MPMX19_04840 0.70 -0.6
248,952 + MPMX19_04840 0.70 -1.1
248,953 - MPMX19_04840 0.70 +0.3
248,953 - MPMX19_04840 0.70 +0.0
249,147 + MPMX19_04840 0.88 -1.1
249,147 + MPMX19_04840 0.88 +0.1
249,148 - MPMX19_04840 0.88 -1.1
249,148 - MPMX19_04840 0.88 -0.1
249,148 - MPMX19_04840 0.88 -0.8
249,148 - MPMX19_04840 0.88 +0.7
249,148 - MPMX19_04840 0.88 +0.1
249,148 - MPMX19_04840 0.88 -0.0
249,204 - -1.4
249,204 - -0.6
249,204 - -0.5
249,204 - -1.1
249,323 - -1.1
249,530 + -0.2
249,550 + -1.0
249,550 + -1.4
252,159 - -1.2
252,222 - -0.2
252,224 - +0.7
252,224 - -0.8
252,233 - -0.7
252,263 - -1.6
252,263 - -0.7
252,263 - -0.7
252,263 - -1.4
252,307 - -1.6
252,309 + -2.2
252,322 + -1.4
252,322 + -0.3
252,347 + -2.7
252,348 - -0.6
252,785 + MPMX19_04842 0.83 -0.4
252,785 + MPMX19_04842 0.83 -1.3
252,785 + MPMX19_04842 0.83 -0.4
252,785 + MPMX19_04842 0.83 -1.5
252,786 - MPMX19_04842 0.83 +0.0
252,786 - MPMX19_04842 0.83 -1.4
252,786 - MPMX19_04842 0.83 +0.3
252,902 + +0.9
253,041 + +0.7
253,041 + +0.6
253,041 + -0.1
253,041 + -0.7
253,041 + +0.4
253,041 + -1.3
253,041 + -1.9
253,041 + -0.8
253,042 - -1.7
253,042 - -0.8
253,042 - -1.4
253,042 - -0.6
253,042 - -0.6
253,042 - +1.7
253,042 - +0.4
253,050 + +0.3

Or see this region's nucleotide sequence