Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04828 and MPMX19_04829 are separated by 313 nucleotides MPMX19_04829 and MPMX19_04830 are separated by 45 nucleotides MPMX19_04830 and MPMX19_04831 are separated by 80 nucleotides MPMX19_04831 and MPMX19_04832 overlap by 1 nucleotides
MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141
_04828
MPMX19_04829: MPMX19_04829 - Putative HTH-type transcriptional regulator, at 236,455 to 236,925
_04829
MPMX19_04830: MPMX19_04830 - FeS cluster assembly protein SufB, at 236,971 to 238,455
_04830
MPMX19_04831: MPMX19_04831 - putative ATP-dependent transporter SufC, at 238,536 to 239,288
_04831
MPMX19_04832: MPMX19_04832 - FeS cluster assembly protein SufD, at 239,288 to 240,655
_04832
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 236.270 kb on - strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.294 kb on + strand at 236.295 kb on - strand at 236.315 kb on + strand at 236.315 kb on + strand at 236.372 kb on - strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.532 kb on + strand, within MPMX19_04829 at 236.532 kb on + strand, within MPMX19_04829 at 236.693 kb on + strand, within MPMX19_04829
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 236,270 - -2.4 236,292 + -0.7 236,292 + +0.3 236,292 + -1.0 236,292 + -1.3 236,292 + -0.0 236,292 + -1.3 236,293 - +0.2 236,293 - -1.6 236,293 - +0.6 236,293 - -0.3 236,293 - -1.4 236,293 - +0.2 236,294 + -1.0 236,295 - -0.7 236,315 + +0.7 236,315 + +0.7 236,372 - +0.7 236,482 + -1.0 236,482 + -0.9 236,482 + +1.8 236,482 + -1.0 236,482 + -0.1 236,482 + -1.6 236,482 + -0.4 236,482 + -0.8 236,532 + MPMX19_04829 0.16 -1.3 236,532 + MPMX19_04829 0.16 +0.1 236,693 + MPMX19_04829 0.51 -0.1
Or see this region's nucleotide sequence