Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04829

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04828 and MPMX19_04829 are separated by 313 nucleotidesMPMX19_04829 and MPMX19_04830 are separated by 45 nucleotides MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141 _04828 MPMX19_04829: MPMX19_04829 - Putative HTH-type transcriptional regulator, at 236,455 to 236,925 _04829 MPMX19_04830: MPMX19_04830 - FeS cluster assembly protein SufB, at 236,971 to 238,455 _04830 Position (kb) 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.521 kb on + strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.522 kb on - strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.581 kb on + strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.582 kb on - strand, within MPMX19_04828at 235.614 kb on + strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.615 kb on - strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.647 kb on + strand, within MPMX19_04828at 235.648 kb on - strand, within MPMX19_04828at 235.648 kb on - strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.761 kb on + strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.762 kb on - strand, within MPMX19_04828at 235.942 kb on - strand, within MPMX19_04828at 235.965 kb on + strand, within MPMX19_04828at 235.966 kb on - strand, within MPMX19_04828at 235.966 kb on - strand, within MPMX19_04828at 236.270 kb on - strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.292 kb on + strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.293 kb on - strandat 236.294 kb on + strandat 236.295 kb on - strandat 236.315 kb on + strandat 236.315 kb on + strandat 236.372 kb on - strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.482 kb on + strandat 236.532 kb on + strand, within MPMX19_04829at 236.532 kb on + strand, within MPMX19_04829at 236.693 kb on + strand, within MPMX19_04829

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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235,521 + MPMX19_04828 0.43 -0.7
235,521 + MPMX19_04828 0.43 -0.4
235,521 + MPMX19_04828 0.43 +1.4
235,521 + MPMX19_04828 0.43 +0.6
235,521 + MPMX19_04828 0.43 -2.1
235,521 + MPMX19_04828 0.43 -1.9
235,521 + MPMX19_04828 0.43 -0.9
235,521 + MPMX19_04828 0.43 -1.1
235,521 + MPMX19_04828 0.43 -0.3
235,521 + MPMX19_04828 0.43 -0.3
235,521 + MPMX19_04828 0.43 -0.4
235,521 + MPMX19_04828 0.43 +0.1
235,521 + MPMX19_04828 0.43 +0.1
235,521 + MPMX19_04828 0.43 +0.2
235,522 - MPMX19_04828 0.43 -1.6
235,522 - MPMX19_04828 0.43 -0.5
235,522 - MPMX19_04828 0.43 -0.5
235,522 - MPMX19_04828 0.43 -2.0
235,522 - MPMX19_04828 0.43 -1.4
235,522 - MPMX19_04828 0.43 +0.7
235,522 - MPMX19_04828 0.43 +0.1
235,522 - MPMX19_04828 0.43 +1.7
235,522 - MPMX19_04828 0.43 -1.4
235,581 + MPMX19_04828 0.49 -1.0
235,581 + MPMX19_04828 0.49 +0.3
235,582 - MPMX19_04828 0.49 +0.4
235,582 - MPMX19_04828 0.49 -1.1
235,582 - MPMX19_04828 0.49 -1.7
235,614 + MPMX19_04828 0.52 -1.6
235,615 - MPMX19_04828 0.52 -0.8
235,615 - MPMX19_04828 0.52 +2.1
235,615 - MPMX19_04828 0.52 +1.0
235,615 - MPMX19_04828 0.52 +0.1
235,615 - MPMX19_04828 0.52 -2.4
235,647 + MPMX19_04828 0.55 +1.1
235,647 + MPMX19_04828 0.55 +1.1
235,647 + MPMX19_04828 0.55 -0.8
235,648 - MPMX19_04828 0.55 +1.3
235,648 - MPMX19_04828 0.55 -2.3
235,761 + MPMX19_04828 0.65 -0.4
235,761 + MPMX19_04828 0.65 +0.7
235,761 + MPMX19_04828 0.65 -0.5
235,761 + MPMX19_04828 0.65 +0.2
235,761 + MPMX19_04828 0.65 -0.4
235,761 + MPMX19_04828 0.65 -2.4
235,761 + MPMX19_04828 0.65 +0.1
235,761 + MPMX19_04828 0.65 -0.3
235,761 + MPMX19_04828 0.65 -0.3
235,761 + MPMX19_04828 0.65 -1.6
235,761 + MPMX19_04828 0.65 -0.1
235,761 + MPMX19_04828 0.65 -0.3
235,761 + MPMX19_04828 0.65 -0.3
235,761 + MPMX19_04828 0.65 -1.3
235,761 + MPMX19_04828 0.65 -0.8
235,761 + MPMX19_04828 0.65 -0.9
235,761 + MPMX19_04828 0.65 +0.7
235,761 + MPMX19_04828 0.65 +1.0
235,761 + MPMX19_04828 0.65 +0.4
235,761 + MPMX19_04828 0.65 -0.7
235,761 + MPMX19_04828 0.65 -0.1
235,761 + MPMX19_04828 0.65 -2.0
235,762 - MPMX19_04828 0.65 -2.5
235,762 - MPMX19_04828 0.65 -2.1
235,762 - MPMX19_04828 0.65 -1.3
235,762 - MPMX19_04828 0.65 +0.1
235,762 - MPMX19_04828 0.65 -0.5
235,762 - MPMX19_04828 0.65 +1.0
235,762 - MPMX19_04828 0.65 -0.2
235,762 - MPMX19_04828 0.65 -0.6
235,762 - MPMX19_04828 0.65 -1.7
235,762 - MPMX19_04828 0.65 -0.6
235,762 - MPMX19_04828 0.65 -1.1
235,762 - MPMX19_04828 0.65 -0.8
235,762 - MPMX19_04828 0.65 -1.6
235,762 - MPMX19_04828 0.65 +0.8
235,942 - MPMX19_04828 0.82 -1.0
235,965 + MPMX19_04828 0.84 -1.9
235,966 - MPMX19_04828 0.84 +1.7
235,966 - MPMX19_04828 0.84 -1.3
236,270 - -2.4
236,292 + -0.7
236,292 + +0.3
236,292 + -1.0
236,292 + -1.3
236,292 + -0.0
236,292 + -1.3
236,293 - +0.2
236,293 - -1.6
236,293 - +0.6
236,293 - -0.3
236,293 - -1.4
236,293 - +0.2
236,294 + -1.0
236,295 - -0.7
236,315 + +0.7
236,315 + +0.7
236,372 - +0.7
236,482 + -1.0
236,482 + -0.9
236,482 + +1.8
236,482 + -1.0
236,482 + -0.1
236,482 + -1.6
236,482 + -0.4
236,482 + -0.8
236,532 + MPMX19_04829 0.16 -1.3
236,532 + MPMX19_04829 0.16 +0.1
236,693 + MPMX19_04829 0.51 -0.1

Or see this region's nucleotide sequence