Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04825

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04824 and MPMX19_04825 are separated by 159 nucleotidesMPMX19_04825 and MPMX19_04826 are separated by 207 nucleotides MPMX19_04824: MPMX19_04824 - Malate synthase G, at 229,772 to 231,931 _04824 MPMX19_04825: MPMX19_04825 - hypothetical protein, at 232,091 to 233,347 _04825 MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616 _04826 Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.364 kb on - strand, within MPMX19_04824at 231.462 kb on + strand, within MPMX19_04824at 231.462 kb on + strand, within MPMX19_04824at 231.462 kb on + strand, within MPMX19_04824at 231.462 kb on + strand, within MPMX19_04824at 231.463 kb on - strand, within MPMX19_04824at 231.463 kb on - strand, within MPMX19_04824at 231.504 kb on + strand, within MPMX19_04824at 231.504 kb on + strand, within MPMX19_04824at 231.505 kb on - strand, within MPMX19_04824at 231.505 kb on - strand, within MPMX19_04824at 231.505 kb on - strand, within MPMX19_04824at 231.505 kb on - strand, within MPMX19_04824at 231.505 kb on - strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.516 kb on + strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.517 kb on - strand, within MPMX19_04824at 231.555 kb on + strand, within MPMX19_04824at 231.555 kb on + strand, within MPMX19_04824at 231.556 kb on - strand, within MPMX19_04824at 231.600 kb on + strand, within MPMX19_04824at 231.600 kb on + strand, within MPMX19_04824at 231.600 kb on + strand, within MPMX19_04824at 231.600 kb on + strand, within MPMX19_04824at 231.601 kb on - strand, within MPMX19_04824at 231.601 kb on - strand, within MPMX19_04824at 231.601 kb on - strand, within MPMX19_04824at 231.663 kb on + strand, within MPMX19_04824at 231.663 kb on + strand, within MPMX19_04824at 231.663 kb on + strand, within MPMX19_04824at 231.663 kb on + strand, within MPMX19_04824at 231.664 kb on - strand, within MPMX19_04824at 231.664 kb on - strand, within MPMX19_04824at 231.664 kb on - strand, within MPMX19_04824at 231.664 kb on - strand, within MPMX19_04824at 231.690 kb on + strand, within MPMX19_04824at 231.690 kb on + strand, within MPMX19_04824at 231.690 kb on + strand, within MPMX19_04824at 231.690 kb on + strand, within MPMX19_04824at 231.773 kb on + strandat 231.773 kb on + strandat 231.773 kb on + strandat 231.774 kb on - strandat 231.774 kb on - strandat 231.882 kb on + strandat 231.882 kb on + strandat 231.882 kb on + strandat 231.882 kb on + strandat 231.883 kb on - strandat 231.883 kb on - strandat 232.047 kb on + strandat 232.047 kb on + strandat 232.048 kb on - strandat 232.048 kb on - strandat 232.060 kb on + strandat 232.061 kb on - strandat 232.061 kb on - strandat 232.968 kb on + strand, within MPMX19_04825at 232.968 kb on + strand, within MPMX19_04825at 232.968 kb on + strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 232.969 kb on - strand, within MPMX19_04825at 233.395 kb on + strandat 233.395 kb on + strandat 233.395 kb on + strandat 233.503 kb on - strandat 233.527 kb on - strandat 233.888 kb on + strand, within MPMX19_04826at 233.888 kb on + strand, within MPMX19_04826at 233.889 kb on - strand, within MPMX19_04826at 233.889 kb on - strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.146 kb on + strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.147 kb on - strand, within MPMX19_04826at 234.164 kb on - strand, within MPMX19_04826

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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231,364 - MPMX19_04824 0.74 -0.6
231,462 + MPMX19_04824 0.78 -1.4
231,462 + MPMX19_04824 0.78 -0.2
231,462 + MPMX19_04824 0.78 -0.3
231,462 + MPMX19_04824 0.78 +0.5
231,463 - MPMX19_04824 0.78 -1.9
231,463 - MPMX19_04824 0.78 +0.3
231,504 + MPMX19_04824 0.80 -0.3
231,504 + MPMX19_04824 0.80 -1.1
231,505 - MPMX19_04824 0.80 +0.1
231,505 - MPMX19_04824 0.80 -0.4
231,505 - MPMX19_04824 0.80 -0.8
231,505 - MPMX19_04824 0.80 -1.1
231,505 - MPMX19_04824 0.80 +0.1
231,516 + MPMX19_04824 0.81 +1.1
231,516 + MPMX19_04824 0.81 -1.2
231,516 + MPMX19_04824 0.81 -0.0
231,516 + MPMX19_04824 0.81 -0.1
231,516 + MPMX19_04824 0.81 -0.1
231,516 + MPMX19_04824 0.81 +0.5
231,517 - MPMX19_04824 0.81 +0.4
231,517 - MPMX19_04824 0.81 +0.4
231,517 - MPMX19_04824 0.81 -0.0
231,517 - MPMX19_04824 0.81 +0.6
231,517 - MPMX19_04824 0.81 -1.6
231,517 - MPMX19_04824 0.81 -0.1
231,517 - MPMX19_04824 0.81 -2.0
231,517 - MPMX19_04824 0.81 -1.7
231,517 - MPMX19_04824 0.81 +0.1
231,517 - MPMX19_04824 0.81 -0.7
231,517 - MPMX19_04824 0.81 -1.6
231,555 + MPMX19_04824 0.83 -2.3
231,555 + MPMX19_04824 0.83 +1.1
231,556 - MPMX19_04824 0.83 -0.7
231,600 + MPMX19_04824 0.85 -1.3
231,600 + MPMX19_04824 0.85 +0.3
231,600 + MPMX19_04824 0.85 +1.2
231,600 + MPMX19_04824 0.85 +0.1
231,601 - MPMX19_04824 0.85 -1.2
231,601 - MPMX19_04824 0.85 -0.9
231,601 - MPMX19_04824 0.85 -0.1
231,663 + MPMX19_04824 0.88 -0.1
231,663 + MPMX19_04824 0.88 -0.4
231,663 + MPMX19_04824 0.88 -1.3
231,663 + MPMX19_04824 0.88 -1.4
231,664 - MPMX19_04824 0.88 +1.0
231,664 - MPMX19_04824 0.88 -0.8
231,664 - MPMX19_04824 0.88 -0.6
231,664 - MPMX19_04824 0.88 -0.3
231,690 + MPMX19_04824 0.89 +0.3
231,690 + MPMX19_04824 0.89 -0.4
231,690 + MPMX19_04824 0.89 -1.5
231,690 + MPMX19_04824 0.89 +0.1
231,773 + -0.2
231,773 + +0.6
231,773 + -1.4
231,774 - +1.0
231,774 - -1.1
231,882 + -0.7
231,882 + -0.1
231,882 + +0.3
231,882 + -1.2
231,883 - +0.4
231,883 - +0.3
232,047 + -0.3
232,047 + -0.0
232,048 - -0.7
232,048 - +0.8
232,060 + -1.3
232,061 - -0.2
232,061 - +2.0
232,968 + MPMX19_04825 0.70 -0.0
232,968 + MPMX19_04825 0.70 -1.4
232,968 + MPMX19_04825 0.70 -0.6
232,969 - MPMX19_04825 0.70 +1.1
232,969 - MPMX19_04825 0.70 +0.4
232,969 - MPMX19_04825 0.70 -2.1
232,969 - MPMX19_04825 0.70 -1.5
232,969 - MPMX19_04825 0.70 -2.1
233,395 + -0.7
233,395 + -1.2
233,395 + +1.7
233,503 - -1.1
233,527 - -0.3
233,888 + MPMX19_04826 0.31 +0.6
233,888 + MPMX19_04826 0.31 -1.6
233,889 - MPMX19_04826 0.31 -0.3
233,889 - MPMX19_04826 0.31 -0.5
234,146 + MPMX19_04826 0.56 +0.7
234,146 + MPMX19_04826 0.56 -0.4
234,146 + MPMX19_04826 0.56 +0.1
234,146 + MPMX19_04826 0.56 -2.0
234,147 - MPMX19_04826 0.56 +1.0
234,147 - MPMX19_04826 0.56 -1.1
234,147 - MPMX19_04826 0.56 +1.3
234,147 - MPMX19_04826 0.56 +0.7
234,147 - MPMX19_04826 0.56 +0.5
234,147 - MPMX19_04826 0.56 +0.3
234,164 - MPMX19_04826 0.57 -0.4

Or see this region's nucleotide sequence