Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04822

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04821 and MPMX19_04822 are separated by 287 nucleotidesMPMX19_04822 and MPMX19_04823 are separated by 12 nucleotides MPMX19_04821: MPMX19_04821 - hypothetical protein, at 225,383 to 227,533 _04821 MPMX19_04822: MPMX19_04822 - Ornithine lipid N-methyltransferase, at 227,821 to 228,396 _04822 MPMX19_04823: MPMX19_04823 - hypothetical protein, at 228,409 to 229,731 _04823 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.929 kb on + strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 226.930 kb on - strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.052 kb on + strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.053 kb on - strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.154 kb on + strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.155 kb on - strand, within MPMX19_04821at 227.187 kb on + strand, within MPMX19_04821at 227.187 kb on + strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.188 kb on - strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.223 kb on + strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.224 kb on - strand, within MPMX19_04821at 227.358 kb on + strandat 227.358 kb on + strandat 227.358 kb on + strandat 227.359 kb on - strandat 227.445 kb on + strandat 227.445 kb on + strandat 227.446 kb on - strandat 227.446 kb on - strandat 227.446 kb on - strandat 227.527 kb on + strandat 227.527 kb on + strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.528 kb on - strandat 227.551 kb on - strandat 227.551 kb on - strandat 227.551 kb on - strandat 227.760 kb on + strandat 227.760 kb on + strandat 227.760 kb on + strandat 227.761 kb on - strandat 227.764 kb on - strandat 227.774 kb on + strandat 227.888 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.271 kb on + strand, within MPMX19_04822at 228.272 kb on + strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.272 kb on - strand, within MPMX19_04822at 228.420 kb on + strandat 228.420 kb on + strandat 228.421 kb on - strandat 228.421 kb on - strandat 228.421 kb on - strandat 228.425 kb on + strandat 228.425 kb on + strandat 228.426 kb on - strandat 228.426 kb on - strandat 228.853 kb on + strand, within MPMX19_04823at 228.853 kb on + strand, within MPMX19_04823at 228.853 kb on + strand, within MPMX19_04823at 228.853 kb on + strand, within MPMX19_04823at 228.854 kb on - strand, within MPMX19_04823at 228.854 kb on - strand, within MPMX19_04823at 228.854 kb on - strand, within MPMX19_04823at 229.027 kb on + strand, within MPMX19_04823at 229.027 kb on + strand, within MPMX19_04823at 229.027 kb on + strand, within MPMX19_04823at 229.027 kb on + strand, within MPMX19_04823at 229.027 kb on + strand, within MPMX19_04823at 229.028 kb on - strand, within MPMX19_04823at 229.028 kb on - strand, within MPMX19_04823at 229.028 kb on - strand, within MPMX19_04823at 229.036 kb on + strand, within MPMX19_04823at 229.036 kb on + strand, within MPMX19_04823at 229.036 kb on + strand, within MPMX19_04823at 229.036 kb on + strand, within MPMX19_04823at 229.037 kb on - strand, within MPMX19_04823at 229.037 kb on - strand, within MPMX19_04823at 229.037 kb on - strand, within MPMX19_04823at 229.037 kb on - strand, within MPMX19_04823at 229.037 kb on - strand, within MPMX19_04823

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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226,929 + MPMX19_04821 0.72 -0.8
226,929 + MPMX19_04821 0.72 -0.4
226,929 + MPMX19_04821 0.72 -1.4
226,929 + MPMX19_04821 0.72 +0.5
226,929 + MPMX19_04821 0.72 -1.7
226,929 + MPMX19_04821 0.72 +0.1
226,929 + MPMX19_04821 0.72 -1.3
226,929 + MPMX19_04821 0.72 -0.6
226,930 - MPMX19_04821 0.72 +0.2
226,930 - MPMX19_04821 0.72 -0.2
226,930 - MPMX19_04821 0.72 -0.3
226,930 - MPMX19_04821 0.72 -2.0
226,930 - MPMX19_04821 0.72 -0.5
226,930 - MPMX19_04821 0.72 +0.7
226,930 - MPMX19_04821 0.72 +0.5
226,930 - MPMX19_04821 0.72 -2.3
226,930 - MPMX19_04821 0.72 +0.3
227,052 + MPMX19_04821 0.78 +0.1
227,052 + MPMX19_04821 0.78 -1.3
227,052 + MPMX19_04821 0.78 +1.4
227,052 + MPMX19_04821 0.78 -0.0
227,052 + MPMX19_04821 0.78 -0.9
227,052 + MPMX19_04821 0.78 -0.5
227,053 - MPMX19_04821 0.78 -1.3
227,053 - MPMX19_04821 0.78 +1.1
227,053 - MPMX19_04821 0.78 -1.3
227,053 - MPMX19_04821 0.78 -0.9
227,053 - MPMX19_04821 0.78 -0.7
227,053 - MPMX19_04821 0.78 +0.2
227,154 + MPMX19_04821 0.82 -1.3
227,154 + MPMX19_04821 0.82 -0.4
227,154 + MPMX19_04821 0.82 +0.6
227,154 + MPMX19_04821 0.82 +0.9
227,154 + MPMX19_04821 0.82 -1.4
227,154 + MPMX19_04821 0.82 -0.8
227,154 + MPMX19_04821 0.82 +0.6
227,154 + MPMX19_04821 0.82 +0.4
227,154 + MPMX19_04821 0.82 +0.7
227,154 + MPMX19_04821 0.82 -0.3
227,154 + MPMX19_04821 0.82 -0.1
227,154 + MPMX19_04821 0.82 -2.2
227,154 + MPMX19_04821 0.82 -0.2
227,154 + MPMX19_04821 0.82 -0.1
227,154 + MPMX19_04821 0.82 +0.3
227,155 - MPMX19_04821 0.82 -0.6
227,155 - MPMX19_04821 0.82 -0.4
227,155 - MPMX19_04821 0.82 +0.7
227,155 - MPMX19_04821 0.82 -1.8
227,155 - MPMX19_04821 0.82 -2.1
227,155 - MPMX19_04821 0.82 -0.4
227,155 - MPMX19_04821 0.82 -1.1
227,155 - MPMX19_04821 0.82 +0.2
227,155 - MPMX19_04821 0.82 -0.7
227,155 - MPMX19_04821 0.82 -0.4
227,155 - MPMX19_04821 0.82 -0.8
227,155 - MPMX19_04821 0.82 -1.4
227,155 - MPMX19_04821 0.82 +2.0
227,155 - MPMX19_04821 0.82 -0.6
227,155 - MPMX19_04821 0.82 -0.8
227,155 - MPMX19_04821 0.82 -1.3
227,155 - MPMX19_04821 0.82 -0.5
227,155 - MPMX19_04821 0.82 -1.1
227,155 - MPMX19_04821 0.82 -0.6
227,155 - MPMX19_04821 0.82 +1.7
227,155 - MPMX19_04821 0.82 -2.0
227,155 - MPMX19_04821 0.82 -1.3
227,187 + MPMX19_04821 0.84 -1.3
227,187 + MPMX19_04821 0.84 +0.2
227,188 - MPMX19_04821 0.84 -0.5
227,188 - MPMX19_04821 0.84 -0.5
227,188 - MPMX19_04821 0.84 -0.0
227,188 - MPMX19_04821 0.84 -1.3
227,188 - MPMX19_04821 0.84 -0.7
227,188 - MPMX19_04821 0.84 -1.4
227,223 + MPMX19_04821 0.86 -0.8
227,223 + MPMX19_04821 0.86 -0.0
227,223 + MPMX19_04821 0.86 +0.8
227,223 + MPMX19_04821 0.86 +0.5
227,223 + MPMX19_04821 0.86 -0.0
227,223 + MPMX19_04821 0.86 +0.4
227,223 + MPMX19_04821 0.86 +0.2
227,224 - MPMX19_04821 0.86 +0.1
227,224 - MPMX19_04821 0.86 +0.5
227,224 - MPMX19_04821 0.86 -1.4
227,224 - MPMX19_04821 0.86 -0.8
227,224 - MPMX19_04821 0.86 -1.2
227,358 + -0.4
227,358 + +0.4
227,358 + -0.3
227,359 - -0.1
227,445 + -1.0
227,445 + -0.0
227,446 - -0.1
227,446 - +0.1
227,446 - -2.2
227,527 + -0.4
227,527 + -1.1
227,528 - -0.3
227,528 - +0.5
227,528 - -2.7
227,528 - -1.1
227,551 - +0.5
227,551 - -0.4
227,551 - -1.4
227,760 + -0.0
227,760 + -0.1
227,760 + +0.7
227,761 - +0.0
227,764 - -0.5
227,774 + -0.4
227,888 + MPMX19_04822 0.12 +1.1
228,271 + MPMX19_04822 0.78 +0.1
228,271 + MPMX19_04822 0.78 -1.3
228,271 + MPMX19_04822 0.78 +0.5
228,271 + MPMX19_04822 0.78 -1.9
228,271 + MPMX19_04822 0.78 -1.4
228,271 + MPMX19_04822 0.78 -1.3
228,271 + MPMX19_04822 0.78 -0.9
228,272 + MPMX19_04822 0.78 -1.4
228,272 - MPMX19_04822 0.78 -0.3
228,272 - MPMX19_04822 0.78 -0.0
228,272 - MPMX19_04822 0.78 +1.3
228,272 - MPMX19_04822 0.78 +0.4
228,272 - MPMX19_04822 0.78 -0.1
228,272 - MPMX19_04822 0.78 -1.7
228,272 - MPMX19_04822 0.78 +0.0
228,272 - MPMX19_04822 0.78 -0.5
228,272 - MPMX19_04822 0.78 -1.4
228,272 - MPMX19_04822 0.78 -1.5
228,272 - MPMX19_04822 0.78 -2.1
228,420 + -0.1
228,420 + -0.6
228,421 - +0.9
228,421 - +0.1
228,421 - -0.3
228,425 + -0.2
228,425 + +0.1
228,426 - +0.1
228,426 - +0.3
228,853 + MPMX19_04823 0.34 +1.0
228,853 + MPMX19_04823 0.34 +0.2
228,853 + MPMX19_04823 0.34 +0.9
228,853 + MPMX19_04823 0.34 -0.6
228,854 - MPMX19_04823 0.34 -0.7
228,854 - MPMX19_04823 0.34 -0.4
228,854 - MPMX19_04823 0.34 -1.8
229,027 + MPMX19_04823 0.47 -1.7
229,027 + MPMX19_04823 0.47 -1.0
229,027 + MPMX19_04823 0.47 -1.3
229,027 + MPMX19_04823 0.47 -1.4
229,027 + MPMX19_04823 0.47 -1.9
229,028 - MPMX19_04823 0.47 -0.9
229,028 - MPMX19_04823 0.47 +0.4
229,028 - MPMX19_04823 0.47 +0.9
229,036 + MPMX19_04823 0.47 +2.7
229,036 + MPMX19_04823 0.47 -1.0
229,036 + MPMX19_04823 0.47 +0.6
229,036 + MPMX19_04823 0.47 -0.4
229,037 - MPMX19_04823 0.47 +0.4
229,037 - MPMX19_04823 0.47 +0.0
229,037 - MPMX19_04823 0.47 -1.6
229,037 - MPMX19_04823 0.47 +1.4
229,037 - MPMX19_04823 0.47 -1.3

Or see this region's nucleotide sequence