Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04793

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04791 and MPMX19_04792 overlap by 4 nucleotidesMPMX19_04792 and MPMX19_04793 overlap by 4 nucleotidesMPMX19_04793 and MPMX19_04794 overlap by 4 nucleotides MPMX19_04791: MPMX19_04791 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 188,920 to 189,663 _04791 MPMX19_04792: MPMX19_04792 - hypothetical protein, at 189,660 to 190,547 _04792 MPMX19_04793: MPMX19_04793 - D-inositol-3-phosphate glycosyltransferase, at 190,544 to 192,574 _04793 MPMX19_04794: MPMX19_04794 - hypothetical protein, at 192,571 to 193,977 _04794 Position (kb) 190 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 189.638 kb on + strandat 189.722 kb on - strandat 189.916 kb on + strand, within MPMX19_04792at 189.916 kb on + strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.917 kb on - strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 189.955 kb on + strand, within MPMX19_04792at 190.333 kb on + strand, within MPMX19_04792at 190.333 kb on + strand, within MPMX19_04792at 190.334 kb on - strand, within MPMX19_04792at 190.334 kb on - strand, within MPMX19_04792at 190.529 kb on + strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.530 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.594 kb on - strandat 190.758 kb on + strand, within MPMX19_04793at 190.759 kb on - strand, within MPMX19_04793at 191.067 kb on + strand, within MPMX19_04793at 191.207 kb on - strand, within MPMX19_04793at 191.207 kb on - strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.221 kb on + strand, within MPMX19_04793at 191.222 kb on - strand, within MPMX19_04793at 191.222 kb on - strand, within MPMX19_04793at 191.222 kb on - strand, within MPMX19_04793at 191.259 kb on + strand, within MPMX19_04793at 191.533 kb on + strand, within MPMX19_04793at 191.533 kb on + strand, within MPMX19_04793at 191.534 kb on - strand, within MPMX19_04793at 191.534 kb on - strand, within MPMX19_04793at 191.534 kb on - strand, within MPMX19_04793at 191.534 kb on - strand, within MPMX19_04793at 191.534 kb on - strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.610 kb on + strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.611 kb on - strand, within MPMX19_04793at 191.976 kb on + strand, within MPMX19_04793at 191.976 kb on + strand, within MPMX19_04793at 191.976 kb on + strand, within MPMX19_04793at 191.976 kb on + strand, within MPMX19_04793at 191.977 kb on - strand, within MPMX19_04793at 192.278 kb on + strand, within MPMX19_04793at 192.278 kb on + strand, within MPMX19_04793at 192.279 kb on - strand, within MPMX19_04793at 192.279 kb on - strand, within MPMX19_04793at 192.279 kb on - strand, within MPMX19_04793at 192.680 kb on - strandat 192.752 kb on + strand, within MPMX19_04794at 192.752 kb on + strand, within MPMX19_04794at 192.752 kb on + strand, within MPMX19_04794at 192.752 kb on + strand, within MPMX19_04794at 192.753 kb on - strand, within MPMX19_04794at 192.753 kb on - strand, within MPMX19_04794at 192.753 kb on - strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.764 kb on + strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.765 kb on - strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.866 kb on + strand, within MPMX19_04794at 192.867 kb on - strand, within MPMX19_04794at 192.867 kb on - strand, within MPMX19_04794at 192.867 kb on - strand, within MPMX19_04794at 192.867 kb on - strand, within MPMX19_04794at 192.917 kb on + strand, within MPMX19_04794at 192.917 kb on + strand, within MPMX19_04794at 192.981 kb on - strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.019 kb on + strand, within MPMX19_04794at 193.020 kb on - strand, within MPMX19_04794at 193.020 kb on - strand, within MPMX19_04794at 193.020 kb on - strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.142 kb on + strand, within MPMX19_04794at 193.143 kb on - strand, within MPMX19_04794at 193.143 kb on - strand, within MPMX19_04794at 193.143 kb on - strand, within MPMX19_04794at 193.143 kb on - strand, within MPMX19_04794at 193.183 kb on + strand, within MPMX19_04794at 193.183 kb on + strand, within MPMX19_04794at 193.183 kb on + strand, within MPMX19_04794at 193.183 kb on + strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.184 kb on - strand, within MPMX19_04794at 193.185 kb on + strand, within MPMX19_04794at 193.348 kb on + strand, within MPMX19_04794at 193.348 kb on + strand, within MPMX19_04794at 193.348 kb on + strand, within MPMX19_04794at 193.348 kb on + strand, within MPMX19_04794at 193.349 kb on - strand, within MPMX19_04794at 193.349 kb on - strand, within MPMX19_04794at 193.349 kb on - strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.427 kb on + strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794at 193.428 kb on - strand, within MPMX19_04794

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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189,638 + +0.7
189,722 - -0.3
189,916 + MPMX19_04792 0.29 +0.8
189,916 + MPMX19_04792 0.29 +0.7
189,917 - MPMX19_04792 0.29 +1.5
189,917 - MPMX19_04792 0.29 +0.3
189,917 - MPMX19_04792 0.29 -0.1
189,955 + MPMX19_04792 0.33 -0.9
189,955 + MPMX19_04792 0.33 -0.4
189,955 + MPMX19_04792 0.33 -0.6
190,333 + MPMX19_04792 0.76 -0.6
190,333 + MPMX19_04792 0.76 -0.4
190,334 - MPMX19_04792 0.76 -0.3
190,334 - MPMX19_04792 0.76 -1.1
190,529 + -1.5
190,530 - -1.7
190,530 - +1.0
190,530 - +0.5
190,530 - +0.3
190,594 - +0.6
190,594 - +2.1
190,594 - -1.1
190,594 - +2.1
190,594 - +0.0
190,758 + MPMX19_04793 0.11 +1.5
190,759 - MPMX19_04793 0.11 -2.5
191,067 + MPMX19_04793 0.26 -0.7
191,207 - MPMX19_04793 0.33 -0.3
191,207 - MPMX19_04793 0.33 -1.0
191,221 + MPMX19_04793 0.33 -1.0
191,221 + MPMX19_04793 0.33 -1.7
191,221 + MPMX19_04793 0.33 -0.7
191,221 + MPMX19_04793 0.33 -0.5
191,221 + MPMX19_04793 0.33 -0.6
191,221 + MPMX19_04793 0.33 +0.3
191,222 - MPMX19_04793 0.33 +1.7
191,222 - MPMX19_04793 0.33 -0.6
191,222 - MPMX19_04793 0.33 -1.3
191,259 + MPMX19_04793 0.35 -0.3
191,533 + MPMX19_04793 0.49 -0.6
191,533 + MPMX19_04793 0.49 -0.5
191,534 - MPMX19_04793 0.49 -0.6
191,534 - MPMX19_04793 0.49 -2.7
191,534 - MPMX19_04793 0.49 -1.5
191,534 - MPMX19_04793 0.49 -1.0
191,534 - MPMX19_04793 0.49 -1.7
191,610 + MPMX19_04793 0.52 -1.8
191,610 + MPMX19_04793 0.52 -1.6
191,610 + MPMX19_04793 0.52 -0.9
191,610 + MPMX19_04793 0.52 +0.2
191,610 + MPMX19_04793 0.52 -1.7
191,610 + MPMX19_04793 0.52 -0.1
191,610 + MPMX19_04793 0.52 -2.0
191,610 + MPMX19_04793 0.52 +0.0
191,611 - MPMX19_04793 0.53 +1.0
191,611 - MPMX19_04793 0.53 -0.3
191,611 - MPMX19_04793 0.53 -0.5
191,611 - MPMX19_04793 0.53 -2.8
191,611 - MPMX19_04793 0.53 +0.7
191,611 - MPMX19_04793 0.53 -2.9
191,976 + MPMX19_04793 0.71 +0.4
191,976 + MPMX19_04793 0.71 +1.4
191,976 + MPMX19_04793 0.71 +1.1
191,976 + MPMX19_04793 0.71 +0.1
191,977 - MPMX19_04793 0.71 +0.7
192,278 + MPMX19_04793 0.85 -1.6
192,278 + MPMX19_04793 0.85 +0.1
192,279 - MPMX19_04793 0.85 -0.3
192,279 - MPMX19_04793 0.85 -0.6
192,279 - MPMX19_04793 0.85 -1.3
192,680 - +0.1
192,752 + MPMX19_04794 0.13 +0.9
192,752 + MPMX19_04794 0.13 -1.7
192,752 + MPMX19_04794 0.13 +0.3
192,752 + MPMX19_04794 0.13 -1.3
192,753 - MPMX19_04794 0.13 +0.7
192,753 - MPMX19_04794 0.13 -0.8
192,753 - MPMX19_04794 0.13 -1.5
192,764 + MPMX19_04794 0.14 -0.9
192,764 + MPMX19_04794 0.14 -0.2
192,764 + MPMX19_04794 0.14 -1.9
192,764 + MPMX19_04794 0.14 -0.9
192,764 + MPMX19_04794 0.14 -0.1
192,764 + MPMX19_04794 0.14 -0.6
192,764 + MPMX19_04794 0.14 -1.7
192,765 - MPMX19_04794 0.14 -1.1
192,765 - MPMX19_04794 0.14 -0.4
192,765 - MPMX19_04794 0.14 +0.8
192,765 - MPMX19_04794 0.14 -1.3
192,765 - MPMX19_04794 0.14 +0.7
192,765 - MPMX19_04794 0.14 +0.2
192,765 - MPMX19_04794 0.14 -0.6
192,866 + MPMX19_04794 0.21 -1.9
192,866 + MPMX19_04794 0.21 -1.4
192,866 + MPMX19_04794 0.21 -0.1
192,866 + MPMX19_04794 0.21 +0.3
192,866 + MPMX19_04794 0.21 -0.6
192,866 + MPMX19_04794 0.21 +0.0
192,866 + MPMX19_04794 0.21 -0.2
192,867 - MPMX19_04794 0.21 +0.3
192,867 - MPMX19_04794 0.21 -0.3
192,867 - MPMX19_04794 0.21 -0.9
192,867 - MPMX19_04794 0.21 -0.5
192,917 + MPMX19_04794 0.25 -0.3
192,917 + MPMX19_04794 0.25 +0.7
192,981 - MPMX19_04794 0.29 -0.4
193,019 + MPMX19_04794 0.32 +0.1
193,019 + MPMX19_04794 0.32 -0.8
193,019 + MPMX19_04794 0.32 -1.0
193,019 + MPMX19_04794 0.32 -1.1
193,019 + MPMX19_04794 0.32 -0.0
193,019 + MPMX19_04794 0.32 -1.1
193,020 - MPMX19_04794 0.32 -1.6
193,020 - MPMX19_04794 0.32 -1.0
193,020 - MPMX19_04794 0.32 -0.6
193,142 + MPMX19_04794 0.41 -0.7
193,142 + MPMX19_04794 0.41 -1.4
193,142 + MPMX19_04794 0.41 -0.4
193,142 + MPMX19_04794 0.41 +0.1
193,142 + MPMX19_04794 0.41 -0.9
193,142 + MPMX19_04794 0.41 +0.5
193,143 - MPMX19_04794 0.41 -0.9
193,143 - MPMX19_04794 0.41 -2.4
193,143 - MPMX19_04794 0.41 +0.0
193,143 - MPMX19_04794 0.41 -2.6
193,183 + MPMX19_04794 0.43 -0.1
193,183 + MPMX19_04794 0.43 -1.3
193,183 + MPMX19_04794 0.43 -2.1
193,183 + MPMX19_04794 0.43 +0.6
193,184 - MPMX19_04794 0.44 -1.4
193,184 - MPMX19_04794 0.44 +0.4
193,184 - MPMX19_04794 0.44 -0.2
193,184 - MPMX19_04794 0.44 -2.2
193,184 - MPMX19_04794 0.44 -1.3
193,184 - MPMX19_04794 0.44 +0.3
193,184 - MPMX19_04794 0.44 -0.9
193,184 - MPMX19_04794 0.44 -0.1
193,185 + MPMX19_04794 0.44 +0.4
193,348 + MPMX19_04794 0.55 -0.1
193,348 + MPMX19_04794 0.55 -0.7
193,348 + MPMX19_04794 0.55 +1.2
193,348 + MPMX19_04794 0.55 +0.9
193,349 - MPMX19_04794 0.55 -0.4
193,349 - MPMX19_04794 0.55 +0.3
193,349 - MPMX19_04794 0.55 +0.1
193,427 + MPMX19_04794 0.61 -1.2
193,427 + MPMX19_04794 0.61 +0.3
193,427 + MPMX19_04794 0.61 -1.3
193,427 + MPMX19_04794 0.61 -0.3
193,427 + MPMX19_04794 0.61 +0.1
193,427 + MPMX19_04794 0.61 +1.1
193,427 + MPMX19_04794 0.61 -1.0
193,427 + MPMX19_04794 0.61 -0.9
193,427 + MPMX19_04794 0.61 +0.1
193,427 + MPMX19_04794 0.61 -1.3
193,427 + MPMX19_04794 0.61 -0.7
193,427 + MPMX19_04794 0.61 -2.1
193,428 - MPMX19_04794 0.61 -1.2
193,428 - MPMX19_04794 0.61 -0.3
193,428 - MPMX19_04794 0.61 -1.9
193,428 - MPMX19_04794 0.61 +0.1
193,428 - MPMX19_04794 0.61 -0.5
193,428 - MPMX19_04794 0.61 +0.1
193,428 - MPMX19_04794 0.61 -1.4
193,428 - MPMX19_04794 0.61 +0.1
193,428 - MPMX19_04794 0.61 +0.9
193,428 - MPMX19_04794 0.61 +0.6
193,428 - MPMX19_04794 0.61 -1.1
193,428 - MPMX19_04794 0.61 +0.7
193,428 - MPMX19_04794 0.61 -1.4

Or see this region's nucleotide sequence