Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04778

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04777 and MPMX19_04778 are separated by 82 nucleotidesMPMX19_04778 and MPMX19_04779 are separated by 304 nucleotides MPMX19_04777: MPMX19_04777 - Sensor histidine kinase RcsC, at 170,541 to 173,276 _04777 MPMX19_04778: MPMX19_04778 - hypothetical protein, at 173,359 to 174,396 _04778 MPMX19_04779: MPMX19_04779 - hypothetical protein, at 174,701 to 175,330 _04779 Position (kb) 173 174 175Strain fitness (log2 ratio) -2 -1 0 1 2at 172.392 kb on + strand, within MPMX19_04777at 172.393 kb on - strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.713 kb on + strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 172.714 kb on - strand, within MPMX19_04777at 173.106 kb on + strandat 173.173 kb on - strandat 173.173 kb on - strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.429 kb on + strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.430 kb on - strandat 173.442 kb on + strandat 173.442 kb on + strandat 173.442 kb on + strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.443 kb on - strandat 173.445 kb on - strandat 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.537 kb on + strand, within MPMX19_04778at 173.538 kb on - strand, within MPMX19_04778at 173.570 kb on + strand, within MPMX19_04778at 173.570 kb on + strand, within MPMX19_04778at 173.634 kb on - strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.774 kb on + strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.775 kb on - strand, within MPMX19_04778at 173.808 kb on - strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.861 kb on + strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.862 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 173.982 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.006 kb on - strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.018 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.038 kb on + strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.039 kb on - strand, within MPMX19_04778at 174.087 kb on - strand, within MPMX19_04778at 174.486 kb on + strandat 174.486 kb on + strandat 174.487 kb on - strandat 174.487 kb on - strandat 174.541 kb on + strandat 174.592 kb on - strandat 174.648 kb on + strandat 174.649 kb on - strandat 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.099 kb on + strand, within MPMX19_04779at 175.239 kb on + strand, within MPMX19_04779

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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172,392 + MPMX19_04777 0.68 -0.3
172,393 - MPMX19_04777 0.68 +0.5
172,713 + MPMX19_04777 0.79 -0.3
172,713 + MPMX19_04777 0.79 -0.2
172,713 + MPMX19_04777 0.79 +0.3
172,713 + MPMX19_04777 0.79 -0.3
172,713 + MPMX19_04777 0.79 -1.1
172,713 + MPMX19_04777 0.79 -2.3
172,713 + MPMX19_04777 0.79 -0.1
172,713 + MPMX19_04777 0.79 -0.9
172,713 + MPMX19_04777 0.79 -0.7
172,713 + MPMX19_04777 0.79 -0.4
172,713 + MPMX19_04777 0.79 +0.5
172,713 + MPMX19_04777 0.79 -0.3
172,714 - MPMX19_04777 0.79 -0.6
172,714 - MPMX19_04777 0.79 -0.9
172,714 - MPMX19_04777 0.79 -0.8
172,714 - MPMX19_04777 0.79 +1.1
172,714 - MPMX19_04777 0.79 +0.1
172,714 - MPMX19_04777 0.79 +0.1
172,714 - MPMX19_04777 0.79 -0.9
172,714 - MPMX19_04777 0.79 -1.0
172,714 - MPMX19_04777 0.79 -2.0
172,714 - MPMX19_04777 0.79 -0.2
173,106 + -2.0
173,173 - +0.1
173,173 - -0.5
173,429 + -2.6
173,429 + +0.1
173,429 + -0.5
173,429 + -0.6
173,429 + +0.3
173,430 - -0.8
173,430 - -0.7
173,430 - +0.3
173,430 - -0.1
173,442 + -0.4
173,442 + +0.8
173,442 + +1.3
173,443 - -0.6
173,443 - -2.0
173,443 - +0.3
173,443 - -0.9
173,445 - -0.4
173,537 + MPMX19_04778 0.17 +0.0
173,537 + MPMX19_04778 0.17 +0.5
173,537 + MPMX19_04778 0.17 -0.7
173,537 + MPMX19_04778 0.17 -0.7
173,538 - MPMX19_04778 0.17 -0.1
173,570 + MPMX19_04778 0.20 +2.6
173,570 + MPMX19_04778 0.20 +0.5
173,634 - MPMX19_04778 0.26 +0.4
173,774 + MPMX19_04778 0.40 -1.2
173,774 + MPMX19_04778 0.40 +0.3
173,774 + MPMX19_04778 0.40 -1.1
173,774 + MPMX19_04778 0.40 -1.3
173,774 + MPMX19_04778 0.40 -1.6
173,774 + MPMX19_04778 0.40 -0.9
173,774 + MPMX19_04778 0.40 -0.6
173,774 + MPMX19_04778 0.40 +1.1
173,774 + MPMX19_04778 0.40 -1.9
173,775 - MPMX19_04778 0.40 -0.1
173,775 - MPMX19_04778 0.40 -0.7
173,775 - MPMX19_04778 0.40 -0.7
173,775 - MPMX19_04778 0.40 -1.5
173,808 - MPMX19_04778 0.43 -0.1
173,861 + MPMX19_04778 0.48 -0.8
173,861 + MPMX19_04778 0.48 +0.3
173,861 + MPMX19_04778 0.48 -1.2
173,861 + MPMX19_04778 0.48 -0.7
173,861 + MPMX19_04778 0.48 -1.3
173,861 + MPMX19_04778 0.48 +1.3
173,862 - MPMX19_04778 0.48 -0.2
173,862 - MPMX19_04778 0.48 +0.3
173,862 - MPMX19_04778 0.48 -0.5
173,862 - MPMX19_04778 0.48 -1.5
173,862 - MPMX19_04778 0.48 +0.2
173,862 - MPMX19_04778 0.48 +1.7
173,862 - MPMX19_04778 0.48 -0.6
173,862 - MPMX19_04778 0.48 -2.0
173,862 - MPMX19_04778 0.48 -0.3
173,862 - MPMX19_04778 0.48 -1.1
173,982 - MPMX19_04778 0.60 -0.6
173,982 - MPMX19_04778 0.60 -0.0
173,982 - MPMX19_04778 0.60 -2.0
174,006 - MPMX19_04778 0.62 -0.1
174,006 - MPMX19_04778 0.62 -0.8
174,006 - MPMX19_04778 0.62 -0.3
174,006 - MPMX19_04778 0.62 -1.4
174,006 - MPMX19_04778 0.62 -0.6
174,006 - MPMX19_04778 0.62 -0.3
174,006 - MPMX19_04778 0.62 +0.3
174,006 - MPMX19_04778 0.62 +0.1
174,006 - MPMX19_04778 0.62 -2.0
174,006 - MPMX19_04778 0.62 -1.2
174,018 + MPMX19_04778 0.63 -1.5
174,018 + MPMX19_04778 0.63 -1.1
174,018 + MPMX19_04778 0.63 +0.2
174,018 + MPMX19_04778 0.63 +0.0
174,018 + MPMX19_04778 0.63 -0.9
174,018 + MPMX19_04778 0.63 -0.7
174,018 + MPMX19_04778 0.63 -0.6
174,018 + MPMX19_04778 0.63 -1.6
174,018 + MPMX19_04778 0.63 -0.5
174,018 + MPMX19_04778 0.63 -1.6
174,018 + MPMX19_04778 0.63 -0.1
174,038 + MPMX19_04778 0.65 +0.3
174,038 + MPMX19_04778 0.65 +1.3
174,038 + MPMX19_04778 0.65 -0.7
174,038 + MPMX19_04778 0.65 +0.4
174,039 - MPMX19_04778 0.66 -0.9
174,039 - MPMX19_04778 0.66 +0.0
174,039 - MPMX19_04778 0.66 -1.5
174,039 - MPMX19_04778 0.66 -0.6
174,039 - MPMX19_04778 0.66 +0.4
174,039 - MPMX19_04778 0.66 +0.4
174,039 - MPMX19_04778 0.66 -2.1
174,039 - MPMX19_04778 0.66 -0.6
174,087 - MPMX19_04778 0.70 -0.3
174,486 + -0.6
174,486 + -1.1
174,487 - -0.9
174,487 - -0.8
174,541 + -1.3
174,592 - -0.1
174,648 + -0.5
174,649 - -0.8
175,099 + MPMX19_04779 0.63 -0.1
175,099 + MPMX19_04779 0.63 -2.5
175,099 + MPMX19_04779 0.63 -0.2
175,239 + MPMX19_04779 0.85 -0.2

Or see this region's nucleotide sequence