Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04758 and MPMX19_04759 are separated by 192 nucleotides MPMX19_04759 and MPMX19_04760 are separated by 9 nucleotides
MPMX19_04758: MPMX19_04758 - Glutamine-binding periplasmic protein, at 149,124 to 149,924
_04758
MPMX19_04759: MPMX19_04759 - HTH-type transcriptional regulator LutR, at 150,117 to 150,836
_04759
MPMX19_04760: MPMX19_04760 - Sialic acid TRAP transporter large permease protein SiaM, at 150,846 to 152,126
_04760
Position (kb) 150
151 Strain fitness (log2 ratio) -2
-1
0
1 at 149.293 kb on + strand, within MPMX19_04758 at 149.293 kb on + strand, within MPMX19_04758 at 149.294 kb on - strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.350 kb on + strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.351 kb on - strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.353 kb on + strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.354 kb on - strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.380 kb on + strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.381 kb on - strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.458 kb on + strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.459 kb on - strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.590 kb on + strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.591 kb on - strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.593 kb on + strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.594 kb on - strand, within MPMX19_04758 at 149.930 kb on + strand at 149.930 kb on + strand at 149.930 kb on + strand at 149.931 kb on - strand at 149.931 kb on - strand at 150.056 kb on + strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.057 kb on - strand at 150.378 kb on + strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.379 kb on - strand, within MPMX19_04759 at 150.396 kb on + strand, within MPMX19_04759 at 150.397 kb on - strand, within MPMX19_04759 at 150.700 kb on + strand, within MPMX19_04759 at 150.700 kb on + strand, within MPMX19_04759 at 150.701 kb on - strand, within MPMX19_04759 at 150.834 kb on + strand at 150.834 kb on + strand at 150.834 kb on + strand at 150.835 kb on - strand at 151.060 kb on + strand, within MPMX19_04760 at 151.060 kb on + strand, within MPMX19_04760 at 151.060 kb on + strand, within MPMX19_04760 at 151.061 kb on - strand, within MPMX19_04760 at 151.061 kb on - strand, within MPMX19_04760 at 151.360 kb on + strand, within MPMX19_04760 at 151.360 kb on + strand, within MPMX19_04760 at 151.361 kb on - strand, within MPMX19_04760
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 149,293 + MPMX19_04758 0.21 -0.9 149,293 + MPMX19_04758 0.21 -1.1 149,294 - MPMX19_04758 0.21 -0.9 149,350 + MPMX19_04758 0.28 -1.6 149,350 + MPMX19_04758 0.28 +0.6 149,350 + MPMX19_04758 0.28 +0.7 149,351 - MPMX19_04758 0.28 +0.1 149,351 - MPMX19_04758 0.28 -0.9 149,351 - MPMX19_04758 0.28 -1.2 149,353 + MPMX19_04758 0.29 -1.1 149,353 + MPMX19_04758 0.29 +0.8 149,353 + MPMX19_04758 0.29 -0.6 149,353 + MPMX19_04758 0.29 -0.1 149,353 + MPMX19_04758 0.29 +0.3 149,353 + MPMX19_04758 0.29 -0.0 149,353 + MPMX19_04758 0.29 +0.4 149,353 + MPMX19_04758 0.29 -0.4 149,354 - MPMX19_04758 0.29 -1.1 149,354 - MPMX19_04758 0.29 -0.2 149,354 - MPMX19_04758 0.29 -1.6 149,354 - MPMX19_04758 0.29 +0.7 149,354 - MPMX19_04758 0.29 -0.2 149,380 + MPMX19_04758 0.32 -0.5 149,380 + MPMX19_04758 0.32 -0.2 149,380 + MPMX19_04758 0.32 -0.1 149,381 - MPMX19_04758 0.32 -0.4 149,381 - MPMX19_04758 0.32 -0.2 149,381 - MPMX19_04758 0.32 -0.3 149,381 - MPMX19_04758 0.32 +0.4 149,381 - MPMX19_04758 0.32 -0.3 149,458 + MPMX19_04758 0.42 -0.3 149,458 + MPMX19_04758 0.42 -1.3 149,458 + MPMX19_04758 0.42 -1.1 149,458 + MPMX19_04758 0.42 -0.1 149,458 + MPMX19_04758 0.42 +0.1 149,459 - MPMX19_04758 0.42 -0.3 149,459 - MPMX19_04758 0.42 -0.6 149,459 - MPMX19_04758 0.42 -1.3 149,459 - MPMX19_04758 0.42 -0.1 149,459 - MPMX19_04758 0.42 +0.7 149,590 + MPMX19_04758 0.58 +0.7 149,590 + MPMX19_04758 0.58 +0.1 149,590 + MPMX19_04758 0.58 +0.2 149,590 + MPMX19_04758 0.58 +0.1 149,590 + MPMX19_04758 0.58 -0.3 149,590 + MPMX19_04758 0.58 -2.0 149,590 + MPMX19_04758 0.58 -1.4 149,591 - MPMX19_04758 0.58 +0.8 149,591 - MPMX19_04758 0.58 -0.6 149,591 - MPMX19_04758 0.58 -1.1 149,591 - MPMX19_04758 0.58 +0.5 149,591 - MPMX19_04758 0.58 -1.8 149,591 - MPMX19_04758 0.58 -1.4 149,591 - MPMX19_04758 0.58 +0.7 149,591 - MPMX19_04758 0.58 +0.5 149,591 - MPMX19_04758 0.58 -0.4 149,593 + MPMX19_04758 0.59 -2.2 149,593 + MPMX19_04758 0.59 +0.1 149,593 + MPMX19_04758 0.59 -0.5 149,593 + MPMX19_04758 0.59 -0.1 149,593 + MPMX19_04758 0.59 -0.5 149,593 + MPMX19_04758 0.59 +0.7 149,593 + MPMX19_04758 0.59 -0.5 149,594 - MPMX19_04758 0.59 -0.1 149,594 - MPMX19_04758 0.59 +1.7 149,594 - MPMX19_04758 0.59 +0.7 149,594 - MPMX19_04758 0.59 +0.2 149,594 - MPMX19_04758 0.59 +0.3 149,594 - MPMX19_04758 0.59 -0.8 149,594 - MPMX19_04758 0.59 -1.1 149,930 + +1.2 149,930 + -0.3 149,930 + -0.1 149,931 - -0.9 149,931 - -1.8 150,056 + -0.4 150,057 - -0.1 150,057 - -0.8 150,057 - +0.5 150,057 - +0.2 150,057 - -0.8 150,378 + MPMX19_04759 0.36 -2.0 150,379 - MPMX19_04759 0.36 -1.2 150,379 - MPMX19_04759 0.36 -0.8 150,379 - MPMX19_04759 0.36 +1.0 150,379 - MPMX19_04759 0.36 +0.1 150,396 + MPMX19_04759 0.39 -1.9 150,397 - MPMX19_04759 0.39 -1.1 150,700 + MPMX19_04759 0.81 -0.8 150,700 + MPMX19_04759 0.81 -0.9 150,701 - MPMX19_04759 0.81 -1.8 150,834 + +0.0 150,834 + +0.2 150,834 + +1.3 150,835 - +0.7 151,060 + MPMX19_04760 0.17 -0.1 151,060 + MPMX19_04760 0.17 -1.0 151,060 + MPMX19_04760 0.17 +0.1 151,061 - MPMX19_04760 0.17 -1.7 151,061 - MPMX19_04760 0.17 -0.5 151,360 + MPMX19_04760 0.40 +0.7 151,360 + MPMX19_04760 0.40 +0.4 151,361 - MPMX19_04760 0.40 -0.3
Or see this region's nucleotide sequence