Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04746 and MPMX19_04747 are separated by 4 nucleotides MPMX19_04747 and MPMX19_04748 overlap by 4 nucleotides MPMX19_04748 and MPMX19_04749 overlap by 25 nucleotides
MPMX19_04746: MPMX19_04746 - hypothetical protein, at 138,315 to 138,812
_04746
MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518
_04747
MPMX19_04748: MPMX19_04748 - hypothetical protein, at 139,515 to 140,084
_04748
MPMX19_04749: MPMX19_04749 - hypothetical protein, at 140,060 to 141,484
_04749
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.581 kb on + strand, within MPMX19_04748 at 139.582 kb on - strand, within MPMX19_04748 at 139.582 kb on - strand, within MPMX19_04748 at 139.582 kb on - strand, within MPMX19_04748 at 139.582 kb on - strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.668 kb on + strand, within MPMX19_04748 at 139.669 kb on - strand, within MPMX19_04748 at 139.669 kb on - strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.752 kb on + strand, within MPMX19_04748 at 139.753 kb on - strand, within MPMX19_04748 at 139.753 kb on - strand, within MPMX19_04748 at 139.753 kb on - strand, within MPMX19_04748 at 139.753 kb on - strand, within MPMX19_04748 at 139.753 kb on - strand, within MPMX19_04748 at 139.764 kb on + strand, within MPMX19_04748 at 139.764 kb on + strand, within MPMX19_04748 at 139.764 kb on + strand, within MPMX19_04748 at 139.764 kb on + strand, within MPMX19_04748 at 139.764 kb on + strand, within MPMX19_04748 at 139.765 kb on - strand, within MPMX19_04748 at 139.765 kb on - strand, within MPMX19_04748 at 139.765 kb on - strand, within MPMX19_04748 at 140.345 kb on + strand, within MPMX19_04749 at 140.346 kb on - strand, within MPMX19_04749 at 140.346 kb on - strand, within MPMX19_04749 at 140.346 kb on - strand, within MPMX19_04749 at 140.627 kb on + strand, within MPMX19_04749 at 140.628 kb on - strand, within MPMX19_04749 at 140.628 kb on - strand, within MPMX19_04749 at 140.628 kb on - strand, within MPMX19_04749 at 140.628 kb on - strand, within MPMX19_04749 at 140.628 kb on - strand, within MPMX19_04749 at 140.798 kb on + strand, within MPMX19_04749 at 140.825 kb on + strand, within MPMX19_04749 at 140.826 kb on - strand, within MPMX19_04749 at 140.847 kb on - strand, within MPMX19_04749
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 138,544 + MPMX19_04746 0.46 -1.5 138,544 + MPMX19_04746 0.46 +0.8 138,544 + MPMX19_04746 0.46 +0.2 138,544 + MPMX19_04746 0.46 -0.3 138,544 + MPMX19_04746 0.46 -2.1 138,544 + MPMX19_04746 0.46 -1.4 138,544 + MPMX19_04746 0.46 +1.4 138,544 + MPMX19_04746 0.46 -0.0 138,545 - MPMX19_04746 0.46 +0.0 138,545 - MPMX19_04746 0.46 -0.3 138,545 - MPMX19_04746 0.46 +0.7 138,545 - MPMX19_04746 0.46 -1.2 138,545 - MPMX19_04746 0.46 +1.1 138,545 - MPMX19_04746 0.46 +0.9 138,545 - MPMX19_04746 0.46 +0.7 138,545 - MPMX19_04746 0.46 -2.3 138,545 - MPMX19_04746 0.46 +0.4 138,545 - MPMX19_04746 0.46 +0.7 138,545 - MPMX19_04746 0.46 +2.0 138,552 + MPMX19_04746 0.48 +0.0 138,552 + MPMX19_04746 0.48 +0.9 138,552 + MPMX19_04746 0.48 -1.9 138,553 - MPMX19_04746 0.48 +1.0 138,553 - MPMX19_04746 0.48 -2.2 138,553 - MPMX19_04746 0.48 -1.8 138,699 + MPMX19_04746 0.77 -0.8 138,699 + MPMX19_04746 0.77 -0.1 138,699 + MPMX19_04746 0.77 -1.1 138,699 + MPMX19_04746 0.77 +1.0 138,699 + MPMX19_04746 0.77 -0.1 138,699 + MPMX19_04746 0.77 -0.1 138,699 + MPMX19_04746 0.77 -0.5 138,699 + MPMX19_04746 0.77 -0.3 138,699 + MPMX19_04746 0.77 +0.5 138,700 - MPMX19_04746 0.77 +0.5 138,700 - MPMX19_04746 0.77 -0.3 138,700 - MPMX19_04746 0.77 -0.4 138,700 - MPMX19_04746 0.77 -1.5 138,700 - MPMX19_04746 0.77 +0.7 139,581 + MPMX19_04748 0.12 +1.7 139,581 + MPMX19_04748 0.12 -0.2 139,581 + MPMX19_04748 0.12 -1.0 139,581 + MPMX19_04748 0.12 -0.4 139,581 + MPMX19_04748 0.12 -1.3 139,581 + MPMX19_04748 0.12 +1.0 139,581 + MPMX19_04748 0.12 -1.5 139,582 - MPMX19_04748 0.12 -0.1 139,582 - MPMX19_04748 0.12 +0.1 139,582 - MPMX19_04748 0.12 +2.0 139,582 - MPMX19_04748 0.12 +2.7 139,668 + MPMX19_04748 0.27 -0.6 139,668 + MPMX19_04748 0.27 -0.3 139,668 + MPMX19_04748 0.27 -0.2 139,668 + MPMX19_04748 0.27 -0.7 139,668 + MPMX19_04748 0.27 +1.3 139,668 + MPMX19_04748 0.27 -1.5 139,668 + MPMX19_04748 0.27 -1.6 139,668 + MPMX19_04748 0.27 -0.9 139,669 - MPMX19_04748 0.27 -0.2 139,669 - MPMX19_04748 0.27 -1.9 139,752 + MPMX19_04748 0.42 +0.1 139,752 + MPMX19_04748 0.42 +0.1 139,752 + MPMX19_04748 0.42 +0.3 139,752 + MPMX19_04748 0.42 +0.1 139,752 + MPMX19_04748 0.42 -0.1 139,752 + MPMX19_04748 0.42 -0.8 139,752 + MPMX19_04748 0.42 -0.5 139,752 + MPMX19_04748 0.42 +0.1 139,753 - MPMX19_04748 0.42 -0.6 139,753 - MPMX19_04748 0.42 +0.3 139,753 - MPMX19_04748 0.42 +1.3 139,753 - MPMX19_04748 0.42 -0.7 139,753 - MPMX19_04748 0.42 +0.1 139,764 + MPMX19_04748 0.44 -0.2 139,764 + MPMX19_04748 0.44 +1.0 139,764 + MPMX19_04748 0.44 -0.3 139,764 + MPMX19_04748 0.44 +1.4 139,764 + MPMX19_04748 0.44 -1.1 139,765 - MPMX19_04748 0.44 +0.2 139,765 - MPMX19_04748 0.44 +0.1 139,765 - MPMX19_04748 0.44 +0.2 140,345 + MPMX19_04749 0.20 -2.7 140,346 - MPMX19_04749 0.20 +1.1 140,346 - MPMX19_04749 0.20 +0.3 140,346 - MPMX19_04749 0.20 -0.5 140,627 + MPMX19_04749 0.40 +0.9 140,628 - MPMX19_04749 0.40 -0.9 140,628 - MPMX19_04749 0.40 +0.0 140,628 - MPMX19_04749 0.40 -0.8 140,628 - MPMX19_04749 0.40 +0.2 140,628 - MPMX19_04749 0.40 -1.2 140,798 + MPMX19_04749 0.52 -0.8 140,825 + MPMX19_04749 0.54 -0.1 140,826 - MPMX19_04749 0.54 -0.6 140,847 - MPMX19_04749 0.55 -1.5
Or see this region's nucleotide sequence