Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04744

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04742 and MPMX19_04743 overlap by 10 nucleotidesMPMX19_04743 and MPMX19_04744 overlap by 4 nucleotidesMPMX19_04744 and MPMX19_04745 are separated by 366 nucleotides MPMX19_04742: MPMX19_04742 - Formyltransferase/hydrolase complex Fhc subunit A, at 133,346 to 135,034 _04742 MPMX19_04743: MPMX19_04743 - Formyltransferase/hydrolase complex subunit D, at 135,025 to 135,930 _04743 MPMX19_04744: MPMX19_04744 - Formyltransferase/hydrolase complex Fhc subunit C, at 135,927 to 136,736 _04744 MPMX19_04745: MPMX19_04745 - HTH-type transcriptional regulator CdhR, at 137,103 to 138,122 _04745 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1 2at 135.046 kb on - strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.445 kb on + strand, within MPMX19_04743at 135.445 kb on + strand, within MPMX19_04743at 135.445 kb on + strand, within MPMX19_04743at 135.446 kb on - strand, within MPMX19_04743at 135.446 kb on - strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.697 kb on + strand, within MPMX19_04743at 135.698 kb on - strand, within MPMX19_04743at 135.877 kb on + strandat 136.446 kb on + strand, within MPMX19_04744at 136.789 kb on + strandat 136.789 kb on + strandat 136.789 kb on + strandat 136.789 kb on + strandat 136.790 kb on - strandat 136.796 kb on + strandat 136.902 kb on + strandat 136.902 kb on + strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.903 kb on - strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.942 kb on + strandat 136.943 kb on - strandat 136.943 kb on - strandat 136.956 kb on + strandat 136.956 kb on + strandat 136.957 kb on - strandat 137.069 kb on + strandat 137.069 kb on + strandat 137.069 kb on + strandat 137.069 kb on + strandat 137.069 kb on + strandat 137.070 kb on - strandat 137.070 kb on - strandat 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.244 kb on + strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.245 kb on - strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.382 kb on + strand, within MPMX19_04745at 137.383 kb on - strand, within MPMX19_04745at 137.383 kb on - strand, within MPMX19_04745

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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135,046 - -0.5
135,058 + -0.9
135,058 + -0.3
135,058 + +0.3
135,058 + -0.0
135,059 - -0.6
135,059 - +0.9
135,059 - -1.4
135,059 - -2.5
135,059 - +0.5
135,059 - -1.5
135,059 - -0.5
135,059 - -1.7
135,059 - -0.3
135,059 - +0.3
135,059 - -0.2
135,059 - -0.3
135,059 - -1.0
135,059 - +0.4
135,445 + MPMX19_04743 0.46 -1.6
135,445 + MPMX19_04743 0.46 -0.9
135,445 + MPMX19_04743 0.46 -0.0
135,446 - MPMX19_04743 0.46 +1.1
135,446 - MPMX19_04743 0.46 +0.1
135,664 + MPMX19_04743 0.71 +1.4
135,664 + MPMX19_04743 0.71 -1.3
135,664 + MPMX19_04743 0.71 -2.0
135,664 + MPMX19_04743 0.71 -0.3
135,665 - MPMX19_04743 0.71 +0.1
135,665 - MPMX19_04743 0.71 +0.4
135,665 - MPMX19_04743 0.71 -0.6
135,665 - MPMX19_04743 0.71 +1.4
135,697 + MPMX19_04743 0.74 +1.7
135,698 - MPMX19_04743 0.74 -0.3
135,877 + +2.7
136,446 + MPMX19_04744 0.64 -0.3
136,789 + +0.5
136,789 + +1.9
136,789 + -1.0
136,789 + +0.1
136,790 - +0.2
136,796 + +0.1
136,902 + -0.9
136,902 + -0.6
136,903 - -1.1
136,903 - -1.5
136,903 - +1.0
136,903 - +0.5
136,903 - -0.3
136,903 - -0.5
136,903 - +0.4
136,903 - -0.8
136,903 - -1.5
136,903 - +0.3
136,942 + -0.7
136,942 + -0.5
136,942 + +1.1
136,942 + -0.6
136,942 + -1.8
136,942 + -0.4
136,942 + -0.7
136,943 - -0.6
136,943 - +0.3
136,956 + -1.5
136,956 + +0.4
136,957 - -0.4
137,069 + -1.3
137,069 + +1.7
137,069 + -0.2
137,069 + +0.9
137,069 + -0.2
137,070 - +0.5
137,070 - -0.4
137,244 + MPMX19_04745 0.14 -0.9
137,244 + MPMX19_04745 0.14 -1.8
137,244 + MPMX19_04745 0.14 -0.9
137,244 + MPMX19_04745 0.14 +0.7
137,244 + MPMX19_04745 0.14 -1.5
137,244 + MPMX19_04745 0.14 -0.6
137,244 + MPMX19_04745 0.14 +0.7
137,244 + MPMX19_04745 0.14 -1.0
137,244 + MPMX19_04745 0.14 +0.3
137,244 + MPMX19_04745 0.14 +1.7
137,245 - MPMX19_04745 0.14 -1.6
137,245 - MPMX19_04745 0.14 -1.0
137,245 - MPMX19_04745 0.14 -0.2
137,245 - MPMX19_04745 0.14 +0.2
137,245 - MPMX19_04745 0.14 -0.3
137,245 - MPMX19_04745 0.14 +0.5
137,245 - MPMX19_04745 0.14 -0.1
137,382 + MPMX19_04745 0.27 +0.7
137,382 + MPMX19_04745 0.27 +0.7
137,382 + MPMX19_04745 0.27 -1.5
137,382 + MPMX19_04745 0.27 -0.3
137,383 - MPMX19_04745 0.27 -0.1
137,383 - MPMX19_04745 0.27 -0.6

Or see this region's nucleotide sequence