Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04733

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04731 and MPMX19_04732 overlap by 8 nucleotidesMPMX19_04732 and MPMX19_04733 are separated by 100 nucleotidesMPMX19_04733 and MPMX19_04734 overlap by 22 nucleotidesMPMX19_04734 and MPMX19_04735 are separated by 17 nucleotides MPMX19_04731: MPMX19_04731 - hypothetical protein, at 122,581 to 123,630 _04731 MPMX19_04732: MPMX19_04732 - hypothetical protein, at 123,623 to 124,513 _04732 MPMX19_04733: MPMX19_04733 - hypothetical protein, at 124,614 to 125,357 _04733 MPMX19_04734: MPMX19_04734 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 125,336 to 125,701 _04734 MPMX19_04735: MPMX19_04735 - hypothetical protein, at 125,719 to 126,795 _04735 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1at 123.726 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.734 kb on - strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.912 kb on + strand, within MPMX19_04733at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.824 kb on + strandat 125.825 kb on - strandat 125.825 kb on - strandat 125.825 kb on - strandat 125.840 kb on - strand, within MPMX19_04735at 125.840 kb on - strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.272 kb on + strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735at 126.273 kb on - strand, within MPMX19_04735

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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123,726 + MPMX19_04732 0.12 -0.6
123,816 + MPMX19_04732 0.22 +0.7
123,816 + MPMX19_04732 0.22 +0.5
123,816 + MPMX19_04732 0.22 +0.7
123,816 + MPMX19_04732 0.22 -0.9
123,816 + MPMX19_04732 0.22 -0.0
123,816 + MPMX19_04732 0.22 +1.0
123,817 - MPMX19_04732 0.22 -0.3
123,817 - MPMX19_04732 0.22 -1.6
123,817 - MPMX19_04732 0.22 +0.6
124,578 + -0.0
124,578 + -0.9
124,578 + -0.5
124,578 + -0.7
124,578 + +0.2
124,578 + -0.5
124,579 - -0.4
124,579 - -0.1
124,579 - -1.0
124,579 - -1.8
124,579 - +0.3
124,579 - -1.6
124,579 - -1.0
124,734 - MPMX19_04733 0.16 -0.1
124,776 + MPMX19_04733 0.22 -1.2
124,776 + MPMX19_04733 0.22 +0.7
124,776 + MPMX19_04733 0.22 -0.0
124,776 + MPMX19_04733 0.22 -0.6
124,776 + MPMX19_04733 0.22 -0.1
124,776 + MPMX19_04733 0.22 -0.2
124,776 + MPMX19_04733 0.22 +1.2
124,776 + MPMX19_04733 0.22 -0.3
124,776 + MPMX19_04733 0.22 -0.3
124,776 + MPMX19_04733 0.22 +0.6
124,776 + MPMX19_04733 0.22 -1.1
124,777 - MPMX19_04733 0.22 +1.7
124,777 - MPMX19_04733 0.22 +0.5
124,777 - MPMX19_04733 0.22 -1.3
124,777 - MPMX19_04733 0.22 -0.6
124,777 - MPMX19_04733 0.22 -1.0
124,777 - MPMX19_04733 0.22 -0.0
124,777 - MPMX19_04733 0.22 -1.6
124,777 - MPMX19_04733 0.22 -1.2
124,777 - MPMX19_04733 0.22 +0.8
124,777 - MPMX19_04733 0.22 +0.2
124,777 - MPMX19_04733 0.22 -1.4
124,777 - MPMX19_04733 0.22 +0.6
124,777 - MPMX19_04733 0.22 -1.0
124,777 - MPMX19_04733 0.22 -0.9
124,912 + MPMX19_04733 0.40 +0.7
125,448 + MPMX19_04734 0.31 -0.4
125,448 + MPMX19_04734 0.31 +0.2
125,448 + MPMX19_04734 0.31 -1.4
125,448 + MPMX19_04734 0.31 +0.7
125,448 + MPMX19_04734 0.31 -0.5
125,448 + MPMX19_04734 0.31 +0.2
125,448 + MPMX19_04734 0.31 -0.6
125,449 - MPMX19_04734 0.31 -1.8
125,449 - MPMX19_04734 0.31 -1.2
125,449 - MPMX19_04734 0.31 +0.4
125,449 - MPMX19_04734 0.31 +0.3
125,449 - MPMX19_04734 0.31 -0.3
125,824 + -0.3
125,824 + -1.2
125,824 + -0.6
125,824 + +0.6
125,824 + -0.5
125,825 - -0.7
125,825 - +0.3
125,825 - -0.0
125,840 - MPMX19_04735 0.11 -0.6
125,840 - MPMX19_04735 0.11 -0.7
126,272 + MPMX19_04735 0.51 +0.7
126,272 + MPMX19_04735 0.51 -0.1
126,272 + MPMX19_04735 0.51 -1.2
126,272 + MPMX19_04735 0.51 -2.5
126,273 - MPMX19_04735 0.51 +0.4
126,273 - MPMX19_04735 0.51 -1.4
126,273 - MPMX19_04735 0.51 +0.4
126,273 - MPMX19_04735 0.51 -1.1
126,273 - MPMX19_04735 0.51 +0.2

Or see this region's nucleotide sequence