Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04730

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04729 and MPMX19_04730 are separated by 140 nucleotidesMPMX19_04730 and MPMX19_04731 are separated by 10 nucleotides MPMX19_04729: MPMX19_04729 - hypothetical protein, at 120,784 to 121,857 _04729 MPMX19_04730: MPMX19_04730 - Transcription elongation factor GreB, at 121,998 to 122,570 _04730 MPMX19_04731: MPMX19_04731 - hypothetical protein, at 122,581 to 123,630 _04731 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 121.026 kb on + strand, within MPMX19_04729at 121.027 kb on - strand, within MPMX19_04729at 121.027 kb on - strand, within MPMX19_04729at 121.027 kb on - strand, within MPMX19_04729at 121.027 kb on - strand, within MPMX19_04729at 121.028 kb on + strand, within MPMX19_04729at 121.028 kb on + strand, within MPMX19_04729at 121.028 kb on + strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.029 kb on - strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.082 kb on + strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.083 kb on - strand, within MPMX19_04729at 121.121 kb on + strand, within MPMX19_04729at 121.122 kb on - strand, within MPMX19_04729at 121.223 kb on + strand, within MPMX19_04729at 121.223 kb on + strand, within MPMX19_04729at 121.223 kb on + strand, within MPMX19_04729at 121.224 kb on - strand, within MPMX19_04729at 121.229 kb on + strand, within MPMX19_04729at 121.229 kb on + strand, within MPMX19_04729at 121.229 kb on + strand, within MPMX19_04729at 121.229 kb on + strand, within MPMX19_04729at 121.230 kb on - strand, within MPMX19_04729at 121.230 kb on - strand, within MPMX19_04729at 121.230 kb on - strand, within MPMX19_04729at 121.230 kb on - strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.286 kb on + strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.287 kb on - strand, within MPMX19_04729at 121.341 kb on - strand, within MPMX19_04729at 121.388 kb on + strand, within MPMX19_04729at 121.388 kb on + strand, within MPMX19_04729at 121.388 kb on + strand, within MPMX19_04729at 121.388 kb on + strand, within MPMX19_04729at 121.389 kb on - strand, within MPMX19_04729at 121.389 kb on - strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.391 kb on + strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.392 kb on - strand, within MPMX19_04729at 121.490 kb on + strand, within MPMX19_04729at 121.524 kb on - strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.526 kb on + strand, within MPMX19_04729at 121.527 kb on - strand, within MPMX19_04729at 121.527 kb on - strand, within MPMX19_04729at 121.527 kb on - strand, within MPMX19_04729at 121.529 kb on + strand, within MPMX19_04729at 121.529 kb on + strand, within MPMX19_04729at 121.529 kb on + strand, within MPMX19_04729at 121.529 kb on + strand, within MPMX19_04729at 121.530 kb on - strand, within MPMX19_04729at 121.530 kb on - strand, within MPMX19_04729at 121.530 kb on - strand, within MPMX19_04729at 121.530 kb on - strand, within MPMX19_04729at 121.658 kb on + strand, within MPMX19_04729at 121.664 kb on + strand, within MPMX19_04729at 121.665 kb on - strand, within MPMX19_04729at 121.665 kb on - strand, within MPMX19_04729at 121.694 kb on + strand, within MPMX19_04729at 121.695 kb on - strand, within MPMX19_04729at 121.695 kb on - strand, within MPMX19_04729at 122.061 kb on - strand, within MPMX19_04730at 122.061 kb on - strand, within MPMX19_04730at 122.082 kb on + strand, within MPMX19_04730at 122.082 kb on + strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.083 kb on - strand, within MPMX19_04730at 122.121 kb on + strand, within MPMX19_04730at 122.122 kb on - strand, within MPMX19_04730at 122.129 kb on - strand, within MPMX19_04730at 122.129 kb on - strand, within MPMX19_04730at 122.855 kb on + strand, within MPMX19_04731at 122.856 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.314 kb on + strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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121,026 + MPMX19_04729 0.23 -0.9
121,027 - MPMX19_04729 0.23 -0.6
121,027 - MPMX19_04729 0.23 +0.3
121,027 - MPMX19_04729 0.23 -0.8
121,027 - MPMX19_04729 0.23 -0.7
121,028 + MPMX19_04729 0.23 -0.1
121,028 + MPMX19_04729 0.23 -0.1
121,028 + MPMX19_04729 0.23 -2.7
121,029 - MPMX19_04729 0.23 -0.4
121,029 - MPMX19_04729 0.23 +0.1
121,029 - MPMX19_04729 0.23 -1.2
121,029 - MPMX19_04729 0.23 -0.2
121,029 - MPMX19_04729 0.23 +0.2
121,029 - MPMX19_04729 0.23 -0.6
121,029 - MPMX19_04729 0.23 -0.6
121,029 - MPMX19_04729 0.23 +0.1
121,029 - MPMX19_04729 0.23 +0.7
121,082 + MPMX19_04729 0.28 -1.3
121,082 + MPMX19_04729 0.28 +0.1
121,082 + MPMX19_04729 0.28 +2.0
121,082 + MPMX19_04729 0.28 -0.5
121,082 + MPMX19_04729 0.28 +1.7
121,082 + MPMX19_04729 0.28 +0.4
121,082 + MPMX19_04729 0.28 +1.0
121,082 + MPMX19_04729 0.28 +0.7
121,082 + MPMX19_04729 0.28 -1.1
121,082 + MPMX19_04729 0.28 -1.3
121,082 + MPMX19_04729 0.28 -1.4
121,082 + MPMX19_04729 0.28 -0.0
121,082 + MPMX19_04729 0.28 -0.3
121,082 + MPMX19_04729 0.28 +0.8
121,082 + MPMX19_04729 0.28 +0.1
121,082 + MPMX19_04729 0.28 +0.8
121,082 + MPMX19_04729 0.28 -0.2
121,083 - MPMX19_04729 0.28 -0.8
121,083 - MPMX19_04729 0.28 +1.3
121,083 - MPMX19_04729 0.28 -1.2
121,083 - MPMX19_04729 0.28 -0.5
121,083 - MPMX19_04729 0.28 -0.1
121,083 - MPMX19_04729 0.28 -0.0
121,083 - MPMX19_04729 0.28 -0.3
121,083 - MPMX19_04729 0.28 +0.6
121,121 + MPMX19_04729 0.31 +1.0
121,122 - MPMX19_04729 0.31 +0.9
121,223 + MPMX19_04729 0.41 -0.4
121,223 + MPMX19_04729 0.41 -1.9
121,223 + MPMX19_04729 0.41 -1.9
121,224 - MPMX19_04729 0.41 -0.5
121,229 + MPMX19_04729 0.41 +0.6
121,229 + MPMX19_04729 0.41 +0.6
121,229 + MPMX19_04729 0.41 -0.5
121,229 + MPMX19_04729 0.41 -0.1
121,230 - MPMX19_04729 0.42 -1.6
121,230 - MPMX19_04729 0.42 -1.3
121,230 - MPMX19_04729 0.42 -0.6
121,230 - MPMX19_04729 0.42 -0.6
121,286 + MPMX19_04729 0.47 -0.4
121,286 + MPMX19_04729 0.47 -0.5
121,286 + MPMX19_04729 0.47 -1.1
121,286 + MPMX19_04729 0.47 +0.2
121,286 + MPMX19_04729 0.47 -1.7
121,286 + MPMX19_04729 0.47 -0.3
121,286 + MPMX19_04729 0.47 -1.7
121,287 - MPMX19_04729 0.47 +0.5
121,287 - MPMX19_04729 0.47 -1.5
121,287 - MPMX19_04729 0.47 +1.1
121,287 - MPMX19_04729 0.47 -0.9
121,287 - MPMX19_04729 0.47 -2.0
121,287 - MPMX19_04729 0.47 -1.3
121,287 - MPMX19_04729 0.47 -0.1
121,287 - MPMX19_04729 0.47 -0.6
121,287 - MPMX19_04729 0.47 -1.1
121,287 - MPMX19_04729 0.47 +0.0
121,287 - MPMX19_04729 0.47 -1.2
121,341 - MPMX19_04729 0.52 -1.9
121,388 + MPMX19_04729 0.56 +0.9
121,388 + MPMX19_04729 0.56 -0.4
121,388 + MPMX19_04729 0.56 -1.8
121,388 + MPMX19_04729 0.56 +0.7
121,389 - MPMX19_04729 0.56 -0.1
121,389 - MPMX19_04729 0.56 -1.2
121,391 + MPMX19_04729 0.57 -0.3
121,391 + MPMX19_04729 0.57 +1.7
121,391 + MPMX19_04729 0.57 +0.7
121,391 + MPMX19_04729 0.57 -1.3
121,391 + MPMX19_04729 0.57 -2.0
121,391 + MPMX19_04729 0.57 -0.6
121,391 + MPMX19_04729 0.57 -0.3
121,391 + MPMX19_04729 0.57 -1.2
121,391 + MPMX19_04729 0.57 +1.0
121,391 + MPMX19_04729 0.57 +0.2
121,391 + MPMX19_04729 0.57 -0.0
121,391 + MPMX19_04729 0.57 +1.4
121,392 - MPMX19_04729 0.57 -0.5
121,392 - MPMX19_04729 0.57 -0.2
121,392 - MPMX19_04729 0.57 -0.3
121,392 - MPMX19_04729 0.57 -1.1
121,392 - MPMX19_04729 0.57 -1.0
121,392 - MPMX19_04729 0.57 -0.9
121,392 - MPMX19_04729 0.57 +0.7
121,490 + MPMX19_04729 0.66 +1.4
121,524 - MPMX19_04729 0.69 -1.0
121,526 + MPMX19_04729 0.69 -0.3
121,526 + MPMX19_04729 0.69 -0.1
121,526 + MPMX19_04729 0.69 -0.9
121,526 + MPMX19_04729 0.69 -2.6
121,526 + MPMX19_04729 0.69 +0.0
121,526 + MPMX19_04729 0.69 -1.2
121,526 + MPMX19_04729 0.69 -1.1
121,526 + MPMX19_04729 0.69 +0.7
121,526 + MPMX19_04729 0.69 +1.4
121,526 + MPMX19_04729 0.69 -0.3
121,527 - MPMX19_04729 0.69 -1.1
121,527 - MPMX19_04729 0.69 -0.3
121,527 - MPMX19_04729 0.69 -0.1
121,529 + MPMX19_04729 0.69 -1.4
121,529 + MPMX19_04729 0.69 +0.8
121,529 + MPMX19_04729 0.69 -0.3
121,529 + MPMX19_04729 0.69 -0.7
121,530 - MPMX19_04729 0.69 +0.1
121,530 - MPMX19_04729 0.69 +1.0
121,530 - MPMX19_04729 0.69 -2.3
121,530 - MPMX19_04729 0.69 +2.3
121,658 + MPMX19_04729 0.81 -0.4
121,664 + MPMX19_04729 0.82 -0.0
121,665 - MPMX19_04729 0.82 -1.1
121,665 - MPMX19_04729 0.82 +0.1
121,694 + MPMX19_04729 0.85 -2.1
121,695 - MPMX19_04729 0.85 +1.4
121,695 - MPMX19_04729 0.85 -0.3
122,061 - MPMX19_04730 0.11 +0.3
122,061 - MPMX19_04730 0.11 +0.5
122,082 + MPMX19_04730 0.15 -1.6
122,082 + MPMX19_04730 0.15 +1.0
122,083 - MPMX19_04730 0.15 -0.1
122,083 - MPMX19_04730 0.15 -0.4
122,083 - MPMX19_04730 0.15 -0.5
122,121 + MPMX19_04730 0.21 -0.6
122,122 - MPMX19_04730 0.22 -0.9
122,129 - MPMX19_04730 0.23 +0.1
122,129 - MPMX19_04730 0.23 -0.3
122,855 + MPMX19_04731 0.26 +0.6
122,856 - MPMX19_04731 0.26 +0.4
122,979 - MPMX19_04731 0.38 +0.0
122,979 - MPMX19_04731 0.38 -0.7
123,002 + MPMX19_04731 0.40 -0.6
123,002 + MPMX19_04731 0.40 +0.7
123,003 - MPMX19_04731 0.40 -0.6
123,003 - MPMX19_04731 0.40 +0.1
123,086 + MPMX19_04731 0.48 +0.0
123,086 + MPMX19_04731 0.48 +0.5
123,086 + MPMX19_04731 0.48 +0.6
123,086 + MPMX19_04731 0.48 -0.8
123,087 - MPMX19_04731 0.48 -1.7
123,087 - MPMX19_04731 0.48 -0.9
123,087 - MPMX19_04731 0.48 +0.9
123,087 - MPMX19_04731 0.48 +0.1
123,087 - MPMX19_04731 0.48 +0.1
123,314 + MPMX19_04731 0.70 -0.4
123,315 - MPMX19_04731 0.70 +1.0
123,315 - MPMX19_04731 0.70 +0.7
123,315 - MPMX19_04731 0.70 +1.4

Or see this region's nucleotide sequence