Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04668 and MPMX19_04669 are separated by 112 nucleotides MPMX19_04669 and MPMX19_04670 are separated by 41 nucleotides MPMX19_04670 and MPMX19_04671 are separated by 156 nucleotides
MPMX19_04668: MPMX19_04668 - HTH-type transcriptional regulator DmlR, at 54,586 to 55,485
_04668
MPMX19_04669: MPMX19_04669 - Glucose 1-dehydrogenase, at 55,598 to 56,314
_04669
MPMX19_04670: MPMX19_04670 - hypothetical protein, at 56,356 to 56,910
_04670
MPMX19_04671: MPMX19_04671 - hypothetical protein, at 57,067 to 57,462
_04671
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.909 kb on - strand, within MPMX19_04668 at 54.971 kb on + strand, within MPMX19_04668 at 54.971 kb on + strand, within MPMX19_04668 at 54.972 kb on - strand, within MPMX19_04668 at 55.286 kb on + strand, within MPMX19_04668 at 55.286 kb on + strand, within MPMX19_04668 at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.517 kb on + strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.518 kb on - strand at 55.537 kb on + strand at 55.537 kb on + strand at 55.537 kb on + strand at 55.538 kb on - strand at 55.560 kb on + strand at 55.560 kb on + strand at 55.561 kb on - strand at 55.561 kb on - strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.592 kb on + strand at 55.593 kb on - strand at 55.593 kb on - strand at 55.593 kb on - strand at 55.593 kb on - strand at 55.593 kb on - strand at 55.934 kb on + strand, within MPMX19_04669 at 55.934 kb on + strand, within MPMX19_04669 at 55.934 kb on + strand, within MPMX19_04669 at 55.934 kb on + strand, within MPMX19_04669 at 55.934 kb on + strand, within MPMX19_04669 at 55.935 kb on - strand, within MPMX19_04669 at 55.935 kb on - strand, within MPMX19_04669 at 55.935 kb on - strand, within MPMX19_04669 at 56.561 kb on - strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.716 kb on + strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.717 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.854 kb on - strand, within MPMX19_04670 at 56.985 kb on - strand at 56.985 kb on - strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.007 kb on + strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.008 kb on - strand at 57.130 kb on - strand, within MPMX19_04671
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 54,909 - MPMX19_04668 0.36 -0.4 54,971 + MPMX19_04668 0.43 +1.2 54,971 + MPMX19_04668 0.43 -0.5 54,972 - MPMX19_04668 0.43 -1.1 55,286 + MPMX19_04668 0.78 +0.3 55,286 + MPMX19_04668 0.78 -1.3 55,517 + -0.9 55,517 + -0.9 55,517 + +0.2 55,517 + -0.3 55,517 + -0.7 55,517 + -0.1 55,517 + -1.5 55,517 + -0.7 55,517 + -0.6 55,518 - -1.5 55,518 - +1.2 55,518 - -1.4 55,518 - -1.7 55,518 - +0.0 55,518 - -0.6 55,518 - -1.0 55,518 - -0.2 55,537 + -1.7 55,537 + +1.2 55,537 + -0.7 55,538 - -0.2 55,560 + -0.0 55,560 + -2.2 55,561 - -0.8 55,561 - -0.9 55,592 + +0.3 55,592 + -0.1 55,592 + -0.5 55,592 + +0.5 55,592 + +1.4 55,592 + -0.6 55,592 + -2.0 55,592 + -1.0 55,592 + +0.0 55,593 - +0.7 55,593 - -0.3 55,593 - +0.6 55,593 - -1.3 55,593 - -1.2 55,934 + MPMX19_04669 0.47 -1.3 55,934 + MPMX19_04669 0.47 -2.1 55,934 + MPMX19_04669 0.47 +0.2 55,934 + MPMX19_04669 0.47 +0.1 55,934 + MPMX19_04669 0.47 -0.8 55,935 - MPMX19_04669 0.47 -0.3 55,935 - MPMX19_04669 0.47 -1.9 55,935 - MPMX19_04669 0.47 -0.3 56,561 - MPMX19_04670 0.37 -1.1 56,716 + MPMX19_04670 0.65 -0.9 56,716 + MPMX19_04670 0.65 -0.2 56,716 + MPMX19_04670 0.65 +0.4 56,716 + MPMX19_04670 0.65 -0.1 56,716 + MPMX19_04670 0.65 -1.8 56,716 + MPMX19_04670 0.65 +1.3 56,717 - MPMX19_04670 0.65 +0.5 56,717 - MPMX19_04670 0.65 -0.6 56,717 - MPMX19_04670 0.65 -1.6 56,717 - MPMX19_04670 0.65 -0.0 56,717 - MPMX19_04670 0.65 +1.3 56,717 - MPMX19_04670 0.65 +0.1 56,717 - MPMX19_04670 0.65 +0.1 56,717 - MPMX19_04670 0.65 -0.4 56,717 - MPMX19_04670 0.65 -1.0 56,717 - MPMX19_04670 0.65 +0.7 56,717 - MPMX19_04670 0.65 -0.2 56,854 - MPMX19_04670 0.90 -0.8 56,854 - MPMX19_04670 0.90 -1.1 56,854 - MPMX19_04670 0.90 +0.9 56,854 - MPMX19_04670 0.90 +0.3 56,985 - -0.6 56,985 - +0.7 57,007 + -0.2 57,007 + +0.5 57,007 + -1.0 57,007 + -1.9 57,007 + -0.4 57,007 + +0.5 57,007 + -0.1 57,007 + +0.0 57,007 + -2.0 57,007 + +0.7 57,007 + -1.5 57,007 + -0.9 57,007 + +1.1 57,007 + +1.1 57,007 + -0.0 57,007 + -0.1 57,007 + -0.1 57,007 + -0.5 57,007 + +0.9 57,007 + -0.3 57,007 + -2.0 57,008 - -1.5 57,008 - +1.7 57,008 - +0.7 57,008 - -0.5 57,008 - -0.3 57,008 - -0.5 57,008 - -0.3 57,008 - -1.6 57,008 - -0.3 57,008 - +0.6 57,008 - -0.2 57,008 - +2.0 57,008 - -2.1 57,130 - MPMX19_04671 0.16 +0.3
Or see this region's nucleotide sequence