Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04661 and MPMX19_04662 overlap by 4 nucleotides MPMX19_04662 and MPMX19_04663 are separated by 107 nucleotides MPMX19_04663 and MPMX19_04664 are separated by 5 nucleotides
MPMX19_04661: MPMX19_04661 - hypothetical protein, at 47,794 to 48,792
_04661
MPMX19_04662: MPMX19_04662 - High-affinity branched-chain amino acid transport system permease protein LivH, at 48,789 to 49,661
_04662
MPMX19_04663: MPMX19_04663 - hypothetical protein, at 49,769 to 51,013
_04663
MPMX19_04664: MPMX19_04664 - hypothetical protein, at 51,019 to 51,903
_04664
Position (kb)
49
50
51
52 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 49.018 kb on + strand, within MPMX19_04662 at 49.018 kb on + strand, within MPMX19_04662 at 49.018 kb on + strand, within MPMX19_04662 at 49.018 kb on + strand, within MPMX19_04662 at 49.018 kb on + strand, within MPMX19_04662 at 49.018 kb on + strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.019 kb on - strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.087 kb on + strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.088 kb on - strand, within MPMX19_04662 at 49.237 kb on + strand, within MPMX19_04662 at 49.237 kb on + strand, within MPMX19_04662 at 49.238 kb on - strand, within MPMX19_04662 at 49.238 kb on - strand, within MPMX19_04662 at 49.238 kb on - strand, within MPMX19_04662 at 49.280 kb on - strand, within MPMX19_04662 at 49.280 kb on - strand, within MPMX19_04662 at 49.280 kb on - strand, within MPMX19_04662 at 49.280 kb on - strand, within MPMX19_04662 at 49.424 kb on - strand, within MPMX19_04662 at 49.468 kb on + strand, within MPMX19_04662 at 49.468 kb on + strand, within MPMX19_04662 at 49.468 kb on + strand, within MPMX19_04662 at 49.468 kb on + strand, within MPMX19_04662 at 49.567 kb on + strand, within MPMX19_04662 at 49.567 kb on + strand, within MPMX19_04662 at 49.567 kb on + strand, within MPMX19_04662 at 49.567 kb on + strand, within MPMX19_04662 at 49.568 kb on - strand, within MPMX19_04662 at 49.568 kb on - strand, within MPMX19_04662 at 49.600 kb on + strand at 49.600 kb on + strand at 49.600 kb on + strand at 49.600 kb on + strand at 49.601 kb on - strand at 49.601 kb on - strand at 49.601 kb on - strand at 49.601 kb on - strand at 49.601 kb on - strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.657 kb on + strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.658 kb on - strand at 49.912 kb on + strand, within MPMX19_04663 at 49.912 kb on + strand, within MPMX19_04663 at 49.912 kb on + strand, within MPMX19_04663 at 49.912 kb on + strand, within MPMX19_04663 at 49.912 kb on + strand, within MPMX19_04663 at 49.912 kb on + strand, within MPMX19_04663 at 49.913 kb on - strand, within MPMX19_04663 at 49.913 kb on - strand, within MPMX19_04663 at 50.013 kb on + strand, within MPMX19_04663 at 50.013 kb on + strand, within MPMX19_04663 at 50.014 kb on - strand, within MPMX19_04663 at 50.014 kb on - strand, within MPMX19_04663 at 50.014 kb on - strand, within MPMX19_04663 at 50.014 kb on - strand, within MPMX19_04663 at 50.031 kb on + strand, within MPMX19_04663 at 50.031 kb on + strand, within MPMX19_04663 at 50.032 kb on - strand, within MPMX19_04663 at 50.032 kb on - strand, within MPMX19_04663 at 50.032 kb on - strand, within MPMX19_04663 at 50.032 kb on - strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.190 kb on + strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.191 kb on - strand, within MPMX19_04663 at 50.253 kb on + strand, within MPMX19_04663 at 50.254 kb on - strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.256 kb on + strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.257 kb on - strand, within MPMX19_04663 at 50.589 kb on + strand, within MPMX19_04663 at 50.589 kb on + strand, within MPMX19_04663 at 50.590 kb on - strand, within MPMX19_04663 at 50.590 kb on - strand, within MPMX19_04663 at 50.601 kb on + strand, within MPMX19_04663 at 51.014 kb on - strand at 51.209 kb on + strand, within MPMX19_04664 at 51.209 kb on + strand, within MPMX19_04664 at 51.209 kb on + strand, within MPMX19_04664 at 51.209 kb on + strand, within MPMX19_04664 at 51.266 kb on + strand, within MPMX19_04664 at 51.267 kb on - strand, within MPMX19_04664 at 51.267 kb on - strand, within MPMX19_04664 at 51.267 kb on - strand, within MPMX19_04664 at 51.267 kb on - strand, within MPMX19_04664 at 51.267 kb on - strand, within MPMX19_04664 at 51.437 kb on + strand, within MPMX19_04664 at 51.438 kb on - strand, within MPMX19_04664 at 51.438 kb on - strand, within MPMX19_04664 at 51.438 kb on - strand, within MPMX19_04664 at 51.438 kb on - strand, within MPMX19_04664 at 51.476 kb on + strand, within MPMX19_04664 at 51.476 kb on + strand, within MPMX19_04664 at 51.476 kb on + strand, within MPMX19_04664 at 51.477 kb on - strand, within MPMX19_04664 at 51.477 kb on - strand, within MPMX19_04664 at 51.696 kb on + strand, within MPMX19_04664 at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.863 kb on + strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.864 kb on - strand at 51.980 kb on - strand at 51.988 kb on + strand at 51.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 49,018 + MPMX19_04662 0.26 -0.3 49,018 + MPMX19_04662 0.26 +2.4 49,018 + MPMX19_04662 0.26 +0.2 49,018 + MPMX19_04662 0.26 +0.1 49,018 + MPMX19_04662 0.26 +0.5 49,018 + MPMX19_04662 0.26 +0.0 49,019 - MPMX19_04662 0.26 -0.3 49,019 - MPMX19_04662 0.26 -0.6 49,019 - MPMX19_04662 0.26 +0.4 49,019 - MPMX19_04662 0.26 -1.2 49,019 - MPMX19_04662 0.26 +1.2 49,019 - MPMX19_04662 0.26 -0.6 49,087 + MPMX19_04662 0.34 -1.8 49,087 + MPMX19_04662 0.34 +0.6 49,087 + MPMX19_04662 0.34 -1.3 49,087 + MPMX19_04662 0.34 +0.4 49,087 + MPMX19_04662 0.34 -0.6 49,087 + MPMX19_04662 0.34 -0.0 49,087 + MPMX19_04662 0.34 -2.2 49,087 + MPMX19_04662 0.34 -1.6 49,088 - MPMX19_04662 0.34 -0.4 49,088 - MPMX19_04662 0.34 -0.5 49,088 - MPMX19_04662 0.34 -1.4 49,088 - MPMX19_04662 0.34 -2.0 49,088 - MPMX19_04662 0.34 -1.5 49,088 - MPMX19_04662 0.34 +1.1 49,088 - MPMX19_04662 0.34 -1.4 49,237 + MPMX19_04662 0.51 -2.0 49,237 + MPMX19_04662 0.51 +1.1 49,238 - MPMX19_04662 0.51 -0.7 49,238 - MPMX19_04662 0.51 -0.1 49,238 - MPMX19_04662 0.51 -0.1 49,280 - MPMX19_04662 0.56 +0.7 49,280 - MPMX19_04662 0.56 -0.1 49,280 - MPMX19_04662 0.56 +1.7 49,280 - MPMX19_04662 0.56 -0.5 49,424 - MPMX19_04662 0.73 -0.2 49,468 + MPMX19_04662 0.78 -1.3 49,468 + MPMX19_04662 0.78 +0.1 49,468 + MPMX19_04662 0.78 +0.6 49,468 + MPMX19_04662 0.78 -0.1 49,567 + MPMX19_04662 0.89 -1.5 49,567 + MPMX19_04662 0.89 -1.0 49,567 + MPMX19_04662 0.89 -0.9 49,567 + MPMX19_04662 0.89 +0.9 49,568 - MPMX19_04662 0.89 -1.3 49,568 - MPMX19_04662 0.89 -0.9 49,600 + -3.0 49,600 + -0.5 49,600 + -0.5 49,600 + -0.5 49,601 - -1.0 49,601 - -0.3 49,601 - +0.5 49,601 - -0.9 49,601 - -0.7 49,657 + -0.3 49,657 + -1.7 49,657 + -0.4 49,657 + +1.1 49,657 + -0.6 49,657 + -0.6 49,657 + +0.1 49,657 + +0.5 49,657 + -0.3 49,657 + +0.1 49,657 + -0.5 49,657 + -0.6 49,657 + -1.8 49,657 + -0.2 49,657 + +0.3 49,657 + -1.0 49,657 + -2.2 49,657 + -0.2 49,657 + -0.0 49,658 - +0.4 49,658 - -0.6 49,658 - -0.4 49,658 - +0.4 49,658 - +1.4 49,658 - -0.2 49,658 - -0.4 49,658 - +0.7 49,658 - +0.2 49,658 - -0.7 49,658 - -0.3 49,658 - +1.1 49,658 - -2.1 49,658 - -0.8 49,658 - +0.6 49,658 - -0.8 49,658 - -0.9 49,658 - -0.5 49,658 - -0.1 49,912 + MPMX19_04663 0.11 -0.9 49,912 + MPMX19_04663 0.11 +0.7 49,912 + MPMX19_04663 0.11 -1.6 49,912 + MPMX19_04663 0.11 -1.0 49,912 + MPMX19_04663 0.11 -0.3 49,912 + MPMX19_04663 0.11 -0.6 49,913 - MPMX19_04663 0.12 -2.3 49,913 - MPMX19_04663 0.12 -0.3 50,013 + MPMX19_04663 0.20 +0.7 50,013 + MPMX19_04663 0.20 -1.2 50,014 - MPMX19_04663 0.20 -2.5 50,014 - MPMX19_04663 0.20 -0.3 50,014 - MPMX19_04663 0.20 -1.0 50,014 - MPMX19_04663 0.20 -1.3 50,031 + MPMX19_04663 0.21 -0.1 50,031 + MPMX19_04663 0.21 +0.7 50,032 - MPMX19_04663 0.21 -0.5 50,032 - MPMX19_04663 0.21 +0.1 50,032 - MPMX19_04663 0.21 -0.2 50,032 - MPMX19_04663 0.21 -1.6 50,190 + MPMX19_04663 0.34 -0.4 50,190 + MPMX19_04663 0.34 -0.4 50,190 + MPMX19_04663 0.34 -1.1 50,190 + MPMX19_04663 0.34 -1.6 50,190 + MPMX19_04663 0.34 +0.9 50,190 + MPMX19_04663 0.34 -0.5 50,190 + MPMX19_04663 0.34 +0.1 50,190 + MPMX19_04663 0.34 -0.7 50,190 + MPMX19_04663 0.34 +0.0 50,191 - MPMX19_04663 0.34 -0.2 50,191 - MPMX19_04663 0.34 -0.8 50,191 - MPMX19_04663 0.34 -1.8 50,191 - MPMX19_04663 0.34 +0.7 50,191 - MPMX19_04663 0.34 -0.5 50,191 - MPMX19_04663 0.34 +0.6 50,191 - MPMX19_04663 0.34 +0.3 50,191 - MPMX19_04663 0.34 -0.1 50,253 + MPMX19_04663 0.39 -0.9 50,254 - MPMX19_04663 0.39 +0.7 50,256 + MPMX19_04663 0.39 -0.8 50,256 + MPMX19_04663 0.39 -1.5 50,256 + MPMX19_04663 0.39 +0.8 50,256 + MPMX19_04663 0.39 +0.1 50,256 + MPMX19_04663 0.39 -0.1 50,256 + MPMX19_04663 0.39 +0.2 50,257 - MPMX19_04663 0.39 -0.8 50,257 - MPMX19_04663 0.39 -0.3 50,257 - MPMX19_04663 0.39 -0.2 50,257 - MPMX19_04663 0.39 -0.9 50,257 - MPMX19_04663 0.39 -1.1 50,257 - MPMX19_04663 0.39 -0.2 50,257 - MPMX19_04663 0.39 +0.1 50,257 - MPMX19_04663 0.39 -1.0 50,257 - MPMX19_04663 0.39 -0.6 50,589 + MPMX19_04663 0.66 +0.9 50,589 + MPMX19_04663 0.66 +0.1 50,590 - MPMX19_04663 0.66 -0.3 50,590 - MPMX19_04663 0.66 -0.1 50,601 + MPMX19_04663 0.67 -0.3 51,014 - -0.4 51,209 + MPMX19_04664 0.21 -1.8 51,209 + MPMX19_04664 0.21 -0.4 51,209 + MPMX19_04664 0.21 +0.8 51,209 + MPMX19_04664 0.21 +1.7 51,266 + MPMX19_04664 0.28 +0.1 51,267 - MPMX19_04664 0.28 -0.5 51,267 - MPMX19_04664 0.28 -0.6 51,267 - MPMX19_04664 0.28 -0.2 51,267 - MPMX19_04664 0.28 -1.6 51,267 - MPMX19_04664 0.28 -0.6 51,437 + MPMX19_04664 0.47 +0.8 51,438 - MPMX19_04664 0.47 +0.4 51,438 - MPMX19_04664 0.47 -2.6 51,438 - MPMX19_04664 0.47 -1.4 51,438 - MPMX19_04664 0.47 -0.1 51,476 + MPMX19_04664 0.52 -1.6 51,476 + MPMX19_04664 0.52 -1.1 51,476 + MPMX19_04664 0.52 -0.3 51,477 - MPMX19_04664 0.52 +0.1 51,477 - MPMX19_04664 0.52 +0.5 51,696 + MPMX19_04664 0.76 -0.3 51,863 + +0.4 51,863 + -0.6 51,863 + -1.0 51,863 + -2.5 51,863 + +0.8 51,863 + -0.3 51,863 + -1.5 51,863 + -0.9 51,863 + -1.6 51,863 + -1.5 51,863 + -0.5 51,863 + -2.3 51,863 + -0.8 51,864 - -1.1 51,864 - -0.2 51,864 - +0.3 51,864 - -0.7 51,864 - -0.4 51,864 - -0.6 51,864 - -0.7 51,864 - +0.2 51,864 - -0.2 51,980 - -0.1 51,988 + -0.3 51,992 - -0.9
Or see this region's nucleotide sequence