Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04653

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04652 and MPMX19_04653 overlap by 4 nucleotidesMPMX19_04653 and MPMX19_04654 overlap by 4 nucleotidesMPMX19_04654 and MPMX19_04655 overlap by 4 nucleotides MPMX19_04652: MPMX19_04652 - 3-isopropylmalate dehydratase large subunit, at 36,685 to 38,106 _04652 MPMX19_04653: MPMX19_04653 - Fumarate reductase flavoprotein subunit, at 38,103 to 39,527 _04653 MPMX19_04654: MPMX19_04654 - Isochorismatase family protein YecD, at 39,524 to 40,138 _04654 MPMX19_04655: MPMX19_04655 - Acetophenone carboxylase gamma subunit, at 40,135 to 42,222 _04655 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.127 kb on + strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.128 kb on - strand, within MPMX19_04652at 37.494 kb on - strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.910 kb on + strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 37.911 kb on - strand, within MPMX19_04652at 38.123 kb on + strandat 38.124 kb on - strandat 38.198 kb on - strandat 38.248 kb on + strand, within MPMX19_04653at 38.248 kb on + strand, within MPMX19_04653at 38.248 kb on + strand, within MPMX19_04653at 38.248 kb on + strand, within MPMX19_04653at 38.248 kb on + strand, within MPMX19_04653at 38.248 kb on + strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.249 kb on - strand, within MPMX19_04653at 38.423 kb on + strand, within MPMX19_04653at 38.424 kb on - strand, within MPMX19_04653at 38.424 kb on - strand, within MPMX19_04653at 38.642 kb on - strand, within MPMX19_04653at 38.842 kb on + strand, within MPMX19_04653at 38.842 kb on + strand, within MPMX19_04653at 38.842 kb on + strand, within MPMX19_04653at 38.843 kb on - strand, within MPMX19_04653at 38.899 kb on + strand, within MPMX19_04653at 38.899 kb on + strand, within MPMX19_04653at 38.899 kb on + strand, within MPMX19_04653at 38.899 kb on + strand, within MPMX19_04653at 38.899 kb on + strand, within MPMX19_04653at 39.119 kb on + strand, within MPMX19_04653at 39.119 kb on + strand, within MPMX19_04653at 39.120 kb on - strand, within MPMX19_04653at 39.120 kb on - strand, within MPMX19_04653at 39.120 kb on - strand, within MPMX19_04653at 39.120 kb on - strand, within MPMX19_04653at 39.130 kb on + strand, within MPMX19_04653at 39.130 kb on + strand, within MPMX19_04653at 39.503 kb on + strandat 39.504 kb on - strandat 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.774 kb on + strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 39.775 kb on - strand, within MPMX19_04654at 40.053 kb on + strand, within MPMX19_04654at 40.054 kb on - strand, within MPMX19_04654at 40.054 kb on - strand, within MPMX19_04654at 40.123 kb on + strandat 40.280 kb on + strandat 40.280 kb on + strandat 40.281 kb on - strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.335 kb on - strandat 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.472 kb on + strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.473 kb on - strand, within MPMX19_04655at 40.518 kb on + strand, within MPMX19_04655

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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37,127 + MPMX19_04652 0.31 +0.5
37,127 + MPMX19_04652 0.31 +1.3
37,127 + MPMX19_04652 0.31 -2.3
37,127 + MPMX19_04652 0.31 +0.0
37,127 + MPMX19_04652 0.31 -1.3
37,127 + MPMX19_04652 0.31 -0.1
37,127 + MPMX19_04652 0.31 +0.5
37,127 + MPMX19_04652 0.31 +0.6
37,127 + MPMX19_04652 0.31 -1.1
37,127 + MPMX19_04652 0.31 -1.8
37,127 + MPMX19_04652 0.31 -0.7
37,127 + MPMX19_04652 0.31 -0.9
37,128 - MPMX19_04652 0.31 -0.6
37,128 - MPMX19_04652 0.31 -0.8
37,128 - MPMX19_04652 0.31 -0.9
37,128 - MPMX19_04652 0.31 +1.0
37,128 - MPMX19_04652 0.31 +0.1
37,128 - MPMX19_04652 0.31 -0.4
37,128 - MPMX19_04652 0.31 +0.1
37,128 - MPMX19_04652 0.31 -0.1
37,128 - MPMX19_04652 0.31 -1.1
37,128 - MPMX19_04652 0.31 +1.7
37,128 - MPMX19_04652 0.31 -0.1
37,128 - MPMX19_04652 0.31 -0.2
37,128 - MPMX19_04652 0.31 +0.5
37,128 - MPMX19_04652 0.31 +0.2
37,128 - MPMX19_04652 0.31 -1.5
37,494 - MPMX19_04652 0.57 -0.4
37,910 + MPMX19_04652 0.86 +0.1
37,910 + MPMX19_04652 0.86 +1.1
37,910 + MPMX19_04652 0.86 -2.0
37,910 + MPMX19_04652 0.86 -1.3
37,910 + MPMX19_04652 0.86 -0.7
37,910 + MPMX19_04652 0.86 -0.2
37,910 + MPMX19_04652 0.86 -1.5
37,910 + MPMX19_04652 0.86 +0.7
37,910 + MPMX19_04652 0.86 +0.1
37,910 + MPMX19_04652 0.86 -0.9
37,911 - MPMX19_04652 0.86 -1.5
37,911 - MPMX19_04652 0.86 +0.3
37,911 - MPMX19_04652 0.86 +0.6
37,911 - MPMX19_04652 0.86 +1.4
37,911 - MPMX19_04652 0.86 +0.1
37,911 - MPMX19_04652 0.86 -0.1
37,911 - MPMX19_04652 0.86 +0.4
37,911 - MPMX19_04652 0.86 +0.3
37,911 - MPMX19_04652 0.86 -0.4
38,123 + +0.5
38,124 - -1.5
38,198 - -0.4
38,248 + MPMX19_04653 0.10 +0.1
38,248 + MPMX19_04653 0.10 +0.1
38,248 + MPMX19_04653 0.10 +0.4
38,248 + MPMX19_04653 0.10 -0.2
38,248 + MPMX19_04653 0.10 -0.2
38,248 + MPMX19_04653 0.10 -0.8
38,249 - MPMX19_04653 0.10 -1.9
38,249 - MPMX19_04653 0.10 -0.8
38,249 - MPMX19_04653 0.10 +0.5
38,249 - MPMX19_04653 0.10 -0.5
38,249 - MPMX19_04653 0.10 -1.3
38,249 - MPMX19_04653 0.10 -0.3
38,249 - MPMX19_04653 0.10 -0.9
38,249 - MPMX19_04653 0.10 -0.8
38,249 - MPMX19_04653 0.10 -0.0
38,423 + MPMX19_04653 0.22 -1.0
38,424 - MPMX19_04653 0.23 +0.9
38,424 - MPMX19_04653 0.23 -0.3
38,642 - MPMX19_04653 0.38 +0.9
38,842 + MPMX19_04653 0.52 -1.4
38,842 + MPMX19_04653 0.52 -1.1
38,842 + MPMX19_04653 0.52 -0.5
38,843 - MPMX19_04653 0.52 +0.4
38,899 + MPMX19_04653 0.56 -0.4
38,899 + MPMX19_04653 0.56 -0.5
38,899 + MPMX19_04653 0.56 -0.1
38,899 + MPMX19_04653 0.56 +0.8
38,899 + MPMX19_04653 0.56 +0.2
39,119 + MPMX19_04653 0.71 -0.6
39,119 + MPMX19_04653 0.71 -1.1
39,120 - MPMX19_04653 0.71 +0.1
39,120 - MPMX19_04653 0.71 +0.7
39,120 - MPMX19_04653 0.71 -1.1
39,120 - MPMX19_04653 0.71 -0.0
39,130 + MPMX19_04653 0.72 -0.3
39,130 + MPMX19_04653 0.72 -1.6
39,503 + -0.3
39,504 - -0.5
39,774 + MPMX19_04654 0.41 -0.3
39,774 + MPMX19_04654 0.41 +0.1
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 -1.2
39,774 + MPMX19_04654 0.41 +0.4
39,774 + MPMX19_04654 0.41 -2.5
39,774 + MPMX19_04654 0.41 -0.7
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 -1.0
39,774 + MPMX19_04654 0.41 +0.4
39,774 + MPMX19_04654 0.41 -1.1
39,774 + MPMX19_04654 0.41 +1.2
39,774 + MPMX19_04654 0.41 +0.0
39,774 + MPMX19_04654 0.41 -1.8
39,774 + MPMX19_04654 0.41 -0.5
39,774 + MPMX19_04654 0.41 -0.6
39,774 + MPMX19_04654 0.41 -1.4
39,774 + MPMX19_04654 0.41 -1.8
39,774 + MPMX19_04654 0.41 -2.3
39,775 - MPMX19_04654 0.41 -0.8
39,775 - MPMX19_04654 0.41 -0.1
39,775 - MPMX19_04654 0.41 -0.7
39,775 - MPMX19_04654 0.41 -0.3
39,775 - MPMX19_04654 0.41 -1.2
39,775 - MPMX19_04654 0.41 +0.0
39,775 - MPMX19_04654 0.41 -0.9
39,775 - MPMX19_04654 0.41 -1.6
39,775 - MPMX19_04654 0.41 -0.4
39,775 - MPMX19_04654 0.41 -0.7
39,775 - MPMX19_04654 0.41 +0.3
39,775 - MPMX19_04654 0.41 +0.4
39,775 - MPMX19_04654 0.41 -0.8
39,775 - MPMX19_04654 0.41 -0.3
39,775 - MPMX19_04654 0.41 +0.1
39,775 - MPMX19_04654 0.41 -0.3
39,775 - MPMX19_04654 0.41 -1.2
39,775 - MPMX19_04654 0.41 +1.1
40,053 + MPMX19_04654 0.86 +0.0
40,054 - MPMX19_04654 0.86 +0.8
40,054 - MPMX19_04654 0.86 -1.3
40,123 + -0.3
40,280 + +0.1
40,280 + -2.8
40,281 - +0.9
40,334 + +0.7
40,334 + +1.3
40,334 + +0.4
40,334 + -1.1
40,334 + -0.1
40,335 - +0.8
40,335 - -0.8
40,335 - +0.2
40,335 - +0.7
40,472 + MPMX19_04655 0.16 +0.4
40,472 + MPMX19_04655 0.16 -0.4
40,472 + MPMX19_04655 0.16 -0.1
40,472 + MPMX19_04655 0.16 -0.9
40,473 - MPMX19_04655 0.16 -0.8
40,473 - MPMX19_04655 0.16 +1.1
40,473 - MPMX19_04655 0.16 -0.8
40,473 - MPMX19_04655 0.16 +0.6
40,518 + MPMX19_04655 0.18 +1.7

Or see this region's nucleotide sequence