Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04602

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04601 and MPMX19_04602 overlap by 4 nucleotidesMPMX19_04602 and MPMX19_04603 are separated by 132 nucleotides MPMX19_04601: MPMX19_04601 - hypothetical protein, at 985,564 to 986,859 _04601 MPMX19_04602: MPMX19_04602 - IS21 family transposase ISMex39, at 986,856 to 987,587 _04602 MPMX19_04603: MPMX19_04603 - hypothetical protein, at 987,720 to 988,175 _04603 Position (kb) 986 987 988Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 985.861 kb on + strand, within MPMX19_04601at 985.862 kb on - strand, within MPMX19_04601at 985.862 kb on - strand, within MPMX19_04601at 985.932 kb on + strand, within MPMX19_04601at 985.932 kb on + strand, within MPMX19_04601at 985.932 kb on + strand, within MPMX19_04601at 985.933 kb on - strand, within MPMX19_04601at 985.945 kb on + strand, within MPMX19_04601at 985.945 kb on + strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.946 kb on - strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 985.999 kb on + strand, within MPMX19_04601at 986.000 kb on - strand, within MPMX19_04601at 986.000 kb on - strand, within MPMX19_04601at 986.000 kb on - strand, within MPMX19_04601at 986.032 kb on + strand, within MPMX19_04601at 986.032 kb on + strand, within MPMX19_04601at 986.032 kb on + strand, within MPMX19_04601at 986.032 kb on + strand, within MPMX19_04601at 986.032 kb on + strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.033 kb on - strand, within MPMX19_04601at 986.149 kb on + strand, within MPMX19_04601at 986.149 kb on + strand, within MPMX19_04601at 986.149 kb on + strand, within MPMX19_04601at 986.149 kb on + strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.150 kb on - strand, within MPMX19_04601at 986.219 kb on + strand, within MPMX19_04601at 986.220 kb on - strand, within MPMX19_04601at 986.220 kb on - strand, within MPMX19_04601at 986.220 kb on - strand, within MPMX19_04601at 986.275 kb on + strand, within MPMX19_04601at 986.276 kb on - strand, within MPMX19_04601at 986.276 kb on - strand, within MPMX19_04601at 986.276 kb on - strand, within MPMX19_04601at 986.356 kb on + strand, within MPMX19_04601at 986.356 kb on + strand, within MPMX19_04601at 986.356 kb on + strand, within MPMX19_04601at 986.356 kb on + strand, within MPMX19_04601at 986.357 kb on - strand, within MPMX19_04601at 986.405 kb on - strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.500 kb on + strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.501 kb on - strand, within MPMX19_04601at 986.833 kb on + strandat 986.855 kb on + strandat 986.855 kb on + strandat 986.855 kb on + strandat 986.855 kb on + strandat 986.855 kb on + strandat 986.855 kb on + strandat 986.856 kb on - strandat 986.856 kb on - strandat 986.856 kb on - strandat 986.904 kb on + strandat 986.904 kb on + strandat 986.923 kb on - strandat 987.030 kb on + strand, within MPMX19_04602at 987.030 kb on + strand, within MPMX19_04602at 987.030 kb on + strand, within MPMX19_04602at 987.030 kb on + strand, within MPMX19_04602at 987.031 kb on - strand, within MPMX19_04602at 987.031 kb on - strand, within MPMX19_04602at 987.031 kb on - strand, within MPMX19_04602at 987.031 kb on - strand, within MPMX19_04602at 987.093 kb on - strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.155 kb on + strand, within MPMX19_04602at 987.156 kb on - strand, within MPMX19_04602at 987.156 kb on - strand, within MPMX19_04602at 987.156 kb on - strand, within MPMX19_04602at 987.205 kb on + strand, within MPMX19_04602at 987.206 kb on - strand, within MPMX19_04602at 987.367 kb on - strand, within MPMX19_04602at 987.367 kb on - strand, within MPMX19_04602at 987.423 kb on + strand, within MPMX19_04602at 987.423 kb on + strand, within MPMX19_04602at 987.423 kb on + strand, within MPMX19_04602at 987.694 kb on + strandat 987.694 kb on + strandat 987.694 kb on + strandat 987.695 kb on - strandat 987.695 kb on - strandat 987.695 kb on - strandat 987.756 kb on + strandat 987.756 kb on + strandat 987.756 kb on + strandat 987.756 kb on + strandat 987.756 kb on + strandat 987.756 kb on + strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.757 kb on - strandat 987.857 kb on + strand, within MPMX19_04603at 987.857 kb on + strand, within MPMX19_04603at 988.144 kb on + strandat 988.144 kb on + strandat 988.145 kb on - strandat 988.145 kb on - strandat 988.182 kb on - strandat 988.228 kb on + strandat 988.228 kb on + strandat 988.229 kb on - strandat 988.229 kb on - strandat 988.229 kb on - strandat 988.263 kb on + strandat 988.384 kb on - strandat 988.432 kb on + strandat 988.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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985,861 + MPMX19_04601 0.23 +0.5
985,862 - MPMX19_04601 0.23 -0.3
985,862 - MPMX19_04601 0.23 -0.7
985,932 + MPMX19_04601 0.28 +0.0
985,932 + MPMX19_04601 0.28 +1.0
985,932 + MPMX19_04601 0.28 -0.5
985,933 - MPMX19_04601 0.28 +0.2
985,945 + MPMX19_04601 0.29 -0.9
985,945 + MPMX19_04601 0.29 -2.9
985,946 - MPMX19_04601 0.29 +0.6
985,946 - MPMX19_04601 0.29 -1.4
985,946 - MPMX19_04601 0.29 +0.1
985,946 - MPMX19_04601 0.29 +0.8
985,946 - MPMX19_04601 0.29 -0.0
985,946 - MPMX19_04601 0.29 -0.1
985,946 - MPMX19_04601 0.29 -1.5
985,999 + MPMX19_04601 0.34 -0.7
985,999 + MPMX19_04601 0.34 +0.3
985,999 + MPMX19_04601 0.34 -1.4
985,999 + MPMX19_04601 0.34 -0.4
985,999 + MPMX19_04601 0.34 -1.0
985,999 + MPMX19_04601 0.34 +0.4
986,000 - MPMX19_04601 0.34 -0.8
986,000 - MPMX19_04601 0.34 -0.2
986,000 - MPMX19_04601 0.34 -1.2
986,032 + MPMX19_04601 0.36 -0.5
986,032 + MPMX19_04601 0.36 +0.6
986,032 + MPMX19_04601 0.36 +0.0
986,032 + MPMX19_04601 0.36 +2.0
986,032 + MPMX19_04601 0.36 -1.4
986,033 - MPMX19_04601 0.36 +0.2
986,033 - MPMX19_04601 0.36 +0.4
986,033 - MPMX19_04601 0.36 -1.4
986,033 - MPMX19_04601 0.36 -0.3
986,033 - MPMX19_04601 0.36 -0.8
986,033 - MPMX19_04601 0.36 +0.0
986,033 - MPMX19_04601 0.36 +1.4
986,033 - MPMX19_04601 0.36 +0.7
986,149 + MPMX19_04601 0.45 -0.8
986,149 + MPMX19_04601 0.45 -0.5
986,149 + MPMX19_04601 0.45 -1.3
986,149 + MPMX19_04601 0.45 +1.5
986,150 - MPMX19_04601 0.45 -1.1
986,150 - MPMX19_04601 0.45 -0.9
986,150 - MPMX19_04601 0.45 -0.2
986,150 - MPMX19_04601 0.45 -0.1
986,150 - MPMX19_04601 0.45 -1.1
986,150 - MPMX19_04601 0.45 -1.9
986,219 + MPMX19_04601 0.51 -1.2
986,220 - MPMX19_04601 0.51 +0.8
986,220 - MPMX19_04601 0.51 -1.6
986,220 - MPMX19_04601 0.51 +1.3
986,275 + MPMX19_04601 0.55 -0.8
986,276 - MPMX19_04601 0.55 -0.5
986,276 - MPMX19_04601 0.55 +0.5
986,276 - MPMX19_04601 0.55 -1.4
986,356 + MPMX19_04601 0.61 +0.7
986,356 + MPMX19_04601 0.61 -0.1
986,356 + MPMX19_04601 0.61 +1.5
986,356 + MPMX19_04601 0.61 -0.5
986,357 - MPMX19_04601 0.61 +0.5
986,405 - MPMX19_04601 0.65 -2.1
986,500 + MPMX19_04601 0.72 +0.7
986,500 + MPMX19_04601 0.72 -0.8
986,500 + MPMX19_04601 0.72 +1.5
986,500 + MPMX19_04601 0.72 -1.0
986,500 + MPMX19_04601 0.72 -0.0
986,500 + MPMX19_04601 0.72 -2.0
986,500 + MPMX19_04601 0.72 +0.2
986,500 + MPMX19_04601 0.72 -1.5
986,500 + MPMX19_04601 0.72 -0.2
986,500 + MPMX19_04601 0.72 +0.5
986,500 + MPMX19_04601 0.72 -2.6
986,501 - MPMX19_04601 0.72 -0.5
986,501 - MPMX19_04601 0.72 -0.1
986,501 - MPMX19_04601 0.72 -0.8
986,501 - MPMX19_04601 0.72 -0.2
986,501 - MPMX19_04601 0.72 +0.5
986,501 - MPMX19_04601 0.72 -1.5
986,501 - MPMX19_04601 0.72 -0.2
986,501 - MPMX19_04601 0.72 +0.5
986,501 - MPMX19_04601 0.72 -1.7
986,501 - MPMX19_04601 0.72 +0.2
986,501 - MPMX19_04601 0.72 -1.0
986,501 - MPMX19_04601 0.72 +0.3
986,501 - MPMX19_04601 0.72 +0.8
986,501 - MPMX19_04601 0.72 -2.4
986,501 - MPMX19_04601 0.72 -0.4
986,833 + +0.6
986,855 + -0.5
986,855 + -0.8
986,855 + +0.5
986,855 + -1.8
986,855 + -0.2
986,855 + -0.2
986,856 - -0.3
986,856 - +0.2
986,856 - -1.3
986,904 + -0.9
986,904 + -0.9
986,923 - -1.7
987,030 + MPMX19_04602 0.24 +0.8
987,030 + MPMX19_04602 0.24 +0.1
987,030 + MPMX19_04602 0.24 -0.3
987,030 + MPMX19_04602 0.24 -1.0
987,031 - MPMX19_04602 0.24 +1.5
987,031 - MPMX19_04602 0.24 -0.6
987,031 - MPMX19_04602 0.24 -0.8
987,031 - MPMX19_04602 0.24 -1.0
987,093 - MPMX19_04602 0.32 -0.3
987,155 + MPMX19_04602 0.41 -0.2
987,155 + MPMX19_04602 0.41 -1.0
987,155 + MPMX19_04602 0.41 -1.6
987,155 + MPMX19_04602 0.41 +0.0
987,155 + MPMX19_04602 0.41 +0.5
987,155 + MPMX19_04602 0.41 -0.8
987,156 - MPMX19_04602 0.41 -0.7
987,156 - MPMX19_04602 0.41 +0.1
987,156 - MPMX19_04602 0.41 -0.9
987,205 + MPMX19_04602 0.48 -1.0
987,206 - MPMX19_04602 0.48 -2.7
987,367 - MPMX19_04602 0.70 -0.2
987,367 - MPMX19_04602 0.70 -1.4
987,423 + MPMX19_04602 0.77 +0.5
987,423 + MPMX19_04602 0.77 +0.0
987,423 + MPMX19_04602 0.77 +0.2
987,694 + -1.2
987,694 + -2.0
987,694 + -2.1
987,695 - -0.5
987,695 - -0.5
987,695 - -1.4
987,756 + -0.2
987,756 + +0.0
987,756 + +1.8
987,756 + -1.1
987,756 + +0.6
987,756 + +1.8
987,757 - -1.4
987,757 - +0.1
987,757 - -1.0
987,757 - -0.8
987,757 - +0.2
987,757 - -1.0
987,757 - -0.5
987,757 - -1.1
987,857 + MPMX19_04603 0.30 -1.5
987,857 + MPMX19_04603 0.30 -2.2
988,144 + -1.5
988,144 + +1.0
988,145 - -1.2
988,145 - -0.1
988,182 - +0.3
988,228 + -0.2
988,228 + -1.5
988,229 - -0.0
988,229 - -0.5
988,229 - +0.9
988,263 + -2.4
988,384 - +0.2
988,432 + -0.4
988,557 + -1.1

Or see this region's nucleotide sequence