Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04593 and MPMX19_04594 are separated by 10 nucleotides MPMX19_04594 and MPMX19_04595 are separated by 178 nucleotides
MPMX19_04593: MPMX19_04593 - Adaptive-response sensory-kinase SasA, at 975,452 to 977,950
_04593
MPMX19_04594: MPMX19_04594 - Transcriptional regulatory protein QseB, at 977,961 to 978,635
_04594
MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190
_04595
Position (kb) 977
978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.598 kb on + strand, within MPMX19_04593 at 977.598 kb on + strand, within MPMX19_04593 at 977.599 kb on - strand, within MPMX19_04593 at 977.599 kb on - strand, within MPMX19_04593 at 977.658 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.698 kb on - strand, within MPMX19_04593 at 977.698 kb on - strand, within MPMX19_04593 at 977.745 kb on + strand at 977.746 kb on - strand at 977.746 kb on - strand at 977.746 kb on - strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.857 kb on - strand at 977.888 kb on + strand at 977.888 kb on + strand at 977.889 kb on - strand at 977.889 kb on - strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.627 kb on + strand at 978.627 kb on + strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.667 kb on + strand at 978.692 kb on + strand at 978.692 kb on + strand at 978.693 kb on - strand at 978.693 kb on - strand at 978.693 kb on - strand at 978.729 kb on + strand at 978.730 kb on - strand at 978.730 kb on - strand at 978.750 kb on + strand at 978.751 kb on - strand at 978.751 kb on - strand at 978.908 kb on + strand at 978.908 kb on + strand at 978.908 kb on + strand at 978.909 kb on - strand at 978.909 kb on - strand at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.064 kb on + strand, within MPMX19_04595 at 979.065 kb on - strand, within MPMX19_04595 at 979.065 kb on - strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.134 kb on - strand, within MPMX19_04595 at 979.134 kb on - strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.218 kb on - strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 977,598 + MPMX19_04593 0.86 +0.4 977,598 + MPMX19_04593 0.86 -1.3 977,599 - MPMX19_04593 0.86 -1.0 977,599 - MPMX19_04593 0.86 -1.5 977,658 + MPMX19_04593 0.88 -1.0 977,697 + MPMX19_04593 0.90 -0.5 977,697 + MPMX19_04593 0.90 +0.5 977,697 + MPMX19_04593 0.90 +0.8 977,698 - MPMX19_04593 0.90 +0.3 977,698 - MPMX19_04593 0.90 +0.2 977,745 + -1.8 977,746 - +0.1 977,746 - -0.5 977,746 - -0.0 977,829 + +0.6 977,829 + -2.8 977,829 + -0.2 977,829 + -1.1 977,829 + +0.1 977,829 + -0.2 977,829 + +1.3 977,829 + -0.1 977,829 + -1.5 977,829 + -0.3 977,829 + +0.0 977,830 - +1.0 977,830 - -2.2 977,830 - +0.0 977,830 - -0.2 977,856 + -1.7 977,856 + -0.7 977,856 + +0.2 977,856 + -1.1 977,857 - +0.3 977,888 + +0.8 977,888 + +0.2 977,889 - -0.0 977,889 - +0.5 977,989 + +0.4 977,989 + -0.2 977,989 + -1.4 977,989 + -1.0 977,989 + +0.3 977,990 - +0.2 977,990 - -2.3 977,990 - +0.3 977,990 - -1.0 977,990 - +1.5 977,990 - +0.5 978,343 + MPMX19_04594 0.57 -0.3 978,343 + MPMX19_04594 0.57 +0.3 978,343 + MPMX19_04594 0.57 -0.5 978,343 + MPMX19_04594 0.57 +0.9 978,343 + MPMX19_04594 0.57 -1.2 978,343 + MPMX19_04594 0.57 -0.7 978,343 + MPMX19_04594 0.57 -0.2 978,344 - MPMX19_04594 0.57 +0.2 978,344 - MPMX19_04594 0.57 +1.2 978,344 - MPMX19_04594 0.57 -1.0 978,344 - MPMX19_04594 0.57 -0.7 978,489 + MPMX19_04594 0.78 +0.1 978,489 + MPMX19_04594 0.78 -2.4 978,489 + MPMX19_04594 0.78 -0.4 978,489 + MPMX19_04594 0.78 +1.3 978,489 + MPMX19_04594 0.78 -1.4 978,490 - MPMX19_04594 0.78 -1.2 978,490 - MPMX19_04594 0.78 +1.1 978,490 - MPMX19_04594 0.78 +0.4 978,490 - MPMX19_04594 0.78 -0.4 978,490 - MPMX19_04594 0.78 +0.1 978,490 - MPMX19_04594 0.78 +1.0 978,502 + MPMX19_04594 0.80 +0.3 978,502 + MPMX19_04594 0.80 -1.9 978,502 + MPMX19_04594 0.80 -0.4 978,502 + MPMX19_04594 0.80 -1.3 978,502 + MPMX19_04594 0.80 +0.2 978,502 + MPMX19_04594 0.80 -0.8 978,502 + MPMX19_04594 0.80 +1.4 978,503 - MPMX19_04594 0.80 -0.5 978,503 - MPMX19_04594 0.80 +0.2 978,503 - MPMX19_04594 0.80 +0.1 978,503 - MPMX19_04594 0.80 -1.0 978,503 - MPMX19_04594 0.80 +0.5 978,503 - MPMX19_04594 0.80 +0.2 978,503 - MPMX19_04594 0.80 -1.4 978,503 - MPMX19_04594 0.80 -1.0 978,503 - MPMX19_04594 0.80 -1.1 978,503 - MPMX19_04594 0.80 -0.5 978,503 - MPMX19_04594 0.80 +0.0 978,627 + -1.1 978,627 + +0.0 978,628 - -1.2 978,628 - -1.5 978,628 - +0.2 978,628 - +1.5 978,667 + +0.5 978,692 + +0.6 978,692 + +0.6 978,693 - -1.2 978,693 - -0.8 978,693 - -1.7 978,729 + -0.5 978,730 - +1.0 978,730 - -1.0 978,750 + +0.6 978,751 - -1.6 978,751 - -1.2 978,908 + -1.1 978,908 + -1.0 978,908 + +0.7 978,909 - -1.3 978,909 - +0.2 979,010 + MPMX19_04595 0.14 -0.2 979,010 + MPMX19_04595 0.14 +1.3 979,010 + MPMX19_04595 0.14 -0.9 979,010 + MPMX19_04595 0.14 +0.2 979,011 - MPMX19_04595 0.14 -1.7 979,011 - MPMX19_04595 0.14 +0.4 979,011 - MPMX19_04595 0.14 +1.5 979,011 - MPMX19_04595 0.14 +0.0 979,064 + MPMX19_04595 0.18 -0.2 979,065 - MPMX19_04595 0.18 -1.5 979,065 - MPMX19_04595 0.18 -1.4 979,133 + MPMX19_04595 0.23 +0.2 979,133 + MPMX19_04595 0.23 +0.5 979,133 + MPMX19_04595 0.23 -0.5 979,133 + MPMX19_04595 0.23 -0.3 979,133 + MPMX19_04595 0.23 -0.5 979,134 - MPMX19_04595 0.23 +0.4 979,134 - MPMX19_04595 0.23 -0.6 979,181 + MPMX19_04595 0.27 +0.7 979,181 + MPMX19_04595 0.27 +0.8 979,181 + MPMX19_04595 0.27 -0.0 979,182 - MPMX19_04595 0.27 +0.0 979,182 - MPMX19_04595 0.27 -0.1 979,182 - MPMX19_04595 0.27 +0.4 979,182 - MPMX19_04595 0.27 +1.8 979,217 + MPMX19_04595 0.29 -0.4 979,217 + MPMX19_04595 0.29 -0.0 979,217 + MPMX19_04595 0.29 +0.5 979,218 - MPMX19_04595 0.29 +0.0 979,244 + MPMX19_04595 0.31 +0.4 979,244 + MPMX19_04595 0.31 -1.4 979,244 + MPMX19_04595 0.31 +1.5 979,245 - MPMX19_04595 0.31 -1.2 979,245 - MPMX19_04595 0.31 -0.6 979,245 - MPMX19_04595 0.31 -0.4 979,289 + MPMX19_04595 0.34 +0.2 979,289 + MPMX19_04595 0.34 -1.1 979,289 + MPMX19_04595 0.34 -0.7 979,289 + MPMX19_04595 0.34 +1.8 979,289 + MPMX19_04595 0.34 +1.2 979,289 + MPMX19_04595 0.34 +0.2 979,290 - MPMX19_04595 0.35 -0.5 979,290 - MPMX19_04595 0.35 -0.5 979,290 - MPMX19_04595 0.35 +0.4 979,290 - MPMX19_04595 0.35 -0.8 979,346 + MPMX19_04595 0.39 -0.8 979,346 + MPMX19_04595 0.39 -0.5
Or see this region's nucleotide sequence