Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04590

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04589 and MPMX19_04590 are separated by 370 nucleotidesMPMX19_04590 and MPMX19_04591 are separated by 8 nucleotidesMPMX19_04591 and MPMX19_04592 are separated by 35 nucleotides MPMX19_04589: MPMX19_04589 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 971,226 to 972,200 _04589 MPMX19_04590: MPMX19_04590 - Nitrate import ATP-binding protein NrtD, at 972,571 to 973,404 _04590 MPMX19_04591: MPMX19_04591 - hypothetical protein, at 973,413 to 974,300 _04591 MPMX19_04592: MPMX19_04592 - hypothetical protein, at 974,336 to 975,370 _04592 Position (kb) 972 973 974Strain fitness (log2 ratio) -2 -1 0 1 2at 971.577 kb on + strand, within MPMX19_04589at 971.577 kb on + strand, within MPMX19_04589at 971.577 kb on + strand, within MPMX19_04589at 971.577 kb on + strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.578 kb on - strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.622 kb on + strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 971.623 kb on - strand, within MPMX19_04589at 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.129 kb on + strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.130 kb on - strandat 972.198 kb on + strandat 972.198 kb on + strandat 972.198 kb on + strandat 972.198 kb on + strandat 972.213 kb on + strandat 972.213 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.334 kb on + strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.335 kb on - strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.361 kb on + strandat 972.362 kb on - strandat 972.362 kb on - strandat 972.362 kb on - strandat 972.362 kb on - strandat 972.362 kb on - strandat 972.406 kb on + strandat 972.407 kb on - strandat 972.658 kb on - strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.674 kb on + strand, within MPMX19_04590at 972.675 kb on - strand, within MPMX19_04590at 972.675 kb on - strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.694 kb on + strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.695 kb on - strand, within MPMX19_04590at 972.727 kb on + strand, within MPMX19_04590at 972.727 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.763 kb on + strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.764 kb on - strand, within MPMX19_04590at 972.823 kb on + strand, within MPMX19_04590at 972.824 kb on - strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.015 kb on + strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.016 kb on - strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.147 kb on + strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.148 kb on - strand, within MPMX19_04590at 973.533 kb on + strand, within MPMX19_04591at 973.533 kb on + strand, within MPMX19_04591at 973.534 kb on - strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.596 kb on + strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.597 kb on - strand, within MPMX19_04591at 973.729 kb on - strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.992 kb on + strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 973.993 kb on - strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.154 kb on + strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.155 kb on - strand, within MPMX19_04591at 974.320 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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971,577 + MPMX19_04589 0.36 +0.9
971,577 + MPMX19_04589 0.36 -1.1
971,577 + MPMX19_04589 0.36 -0.5
971,577 + MPMX19_04589 0.36 -1.0
971,578 - MPMX19_04589 0.36 -1.5
971,578 - MPMX19_04589 0.36 -0.4
971,578 - MPMX19_04589 0.36 +0.3
971,578 - MPMX19_04589 0.36 -0.9
971,578 - MPMX19_04589 0.36 +0.5
971,578 - MPMX19_04589 0.36 -0.6
971,578 - MPMX19_04589 0.36 -0.5
971,622 + MPMX19_04589 0.41 -1.2
971,622 + MPMX19_04589 0.41 +1.0
971,622 + MPMX19_04589 0.41 -1.0
971,622 + MPMX19_04589 0.41 -0.9
971,622 + MPMX19_04589 0.41 +1.1
971,622 + MPMX19_04589 0.41 -1.4
971,622 + MPMX19_04589 0.41 -1.1
971,622 + MPMX19_04589 0.41 -1.4
971,622 + MPMX19_04589 0.41 -1.4
971,622 + MPMX19_04589 0.41 -0.5
971,622 + MPMX19_04589 0.41 +1.3
971,622 + MPMX19_04589 0.41 -1.0
971,622 + MPMX19_04589 0.41 +0.1
971,622 + MPMX19_04589 0.41 -1.7
971,622 + MPMX19_04589 0.41 -0.5
971,622 + MPMX19_04589 0.41 -0.6
971,623 - MPMX19_04589 0.41 -0.2
971,623 - MPMX19_04589 0.41 +0.2
971,623 - MPMX19_04589 0.41 -0.5
971,623 - MPMX19_04589 0.41 -0.5
971,623 - MPMX19_04589 0.41 -0.6
971,623 - MPMX19_04589 0.41 +0.1
971,623 - MPMX19_04589 0.41 -0.6
971,623 - MPMX19_04589 0.41 +0.5
971,623 - MPMX19_04589 0.41 -1.0
971,623 - MPMX19_04589 0.41 +0.2
971,623 - MPMX19_04589 0.41 -0.6
971,623 - MPMX19_04589 0.41 +0.5
971,623 - MPMX19_04589 0.41 -1.9
971,623 - MPMX19_04589 0.41 +0.7
972,129 + +0.1
972,129 + -1.9
972,129 + +0.5
972,129 + -1.3
972,129 + -2.2
972,129 + -0.1
972,129 + -1.0
972,129 + -1.1
972,129 + -0.3
972,129 + -1.5
972,129 + -1.0
972,130 - -0.7
972,130 - -0.6
972,130 - -1.5
972,130 - -0.0
972,130 - -1.0
972,130 - -0.0
972,130 - -1.0
972,130 - -1.0
972,198 + -0.8
972,198 + -0.7
972,198 + -0.3
972,198 + -0.7
972,213 + +0.4
972,213 + -0.4
972,334 + -0.9
972,334 + -0.5
972,334 + +1.6
972,334 + -1.4
972,334 + -0.1
972,334 + +1.4
972,334 + +1.2
972,334 + -0.7
972,334 + -1.2
972,334 + +0.3
972,334 + -0.4
972,334 + +0.2
972,334 + -1.5
972,334 + -1.0
972,334 + -0.1
972,334 + -1.0
972,334 + -0.2
972,334 + -0.0
972,335 - -0.6
972,335 - -1.6
972,335 - +0.8
972,335 - +0.2
972,335 - -1.5
972,335 - +0.0
972,335 - +0.6
972,335 - -0.6
972,361 + -0.0
972,361 + +1.5
972,361 + +1.1
972,361 + +0.2
972,361 + -0.5
972,361 + +0.0
972,361 + -1.2
972,361 + -0.4
972,361 + -0.6
972,361 + -1.0
972,361 + +1.5
972,361 + -0.2
972,361 + +0.6
972,362 - -0.5
972,362 - -1.8
972,362 - +0.2
972,362 - -1.4
972,362 - +0.5
972,406 + -0.2
972,407 - -0.7
972,658 - MPMX19_04590 0.10 -1.7
972,674 + MPMX19_04590 0.12 +0.9
972,674 + MPMX19_04590 0.12 +0.1
972,674 + MPMX19_04590 0.12 -1.2
972,675 - MPMX19_04590 0.12 -1.3
972,675 - MPMX19_04590 0.12 -1.1
972,694 + MPMX19_04590 0.15 +0.8
972,694 + MPMX19_04590 0.15 -0.8
972,694 + MPMX19_04590 0.15 -0.4
972,694 + MPMX19_04590 0.15 -0.5
972,694 + MPMX19_04590 0.15 -1.9
972,694 + MPMX19_04590 0.15 +0.8
972,695 - MPMX19_04590 0.15 -0.5
972,695 - MPMX19_04590 0.15 +1.4
972,695 - MPMX19_04590 0.15 -0.5
972,695 - MPMX19_04590 0.15 +1.1
972,695 - MPMX19_04590 0.15 -1.4
972,695 - MPMX19_04590 0.15 -1.2
972,727 + MPMX19_04590 0.19 -0.5
972,727 + MPMX19_04590 0.19 +0.5
972,763 + MPMX19_04590 0.23 +0.8
972,763 + MPMX19_04590 0.23 -1.6
972,763 + MPMX19_04590 0.23 -0.5
972,763 + MPMX19_04590 0.23 -1.1
972,763 + MPMX19_04590 0.23 -0.8
972,763 + MPMX19_04590 0.23 -0.5
972,764 - MPMX19_04590 0.23 -1.5
972,764 - MPMX19_04590 0.23 -0.1
972,764 - MPMX19_04590 0.23 -1.2
972,764 - MPMX19_04590 0.23 -0.6
972,764 - MPMX19_04590 0.23 -0.8
972,764 - MPMX19_04590 0.23 -1.0
972,823 + MPMX19_04590 0.30 +1.2
972,824 - MPMX19_04590 0.30 +0.6
973,015 + MPMX19_04590 0.53 -0.5
973,015 + MPMX19_04590 0.53 +0.2
973,015 + MPMX19_04590 0.53 -0.1
973,015 + MPMX19_04590 0.53 -0.5
973,015 + MPMX19_04590 0.53 +2.4
973,015 + MPMX19_04590 0.53 -1.1
973,015 + MPMX19_04590 0.53 -1.7
973,015 + MPMX19_04590 0.53 -0.6
973,016 - MPMX19_04590 0.53 +0.8
973,016 - MPMX19_04590 0.53 -0.3
973,016 - MPMX19_04590 0.53 -0.7
973,016 - MPMX19_04590 0.53 -0.2
973,016 - MPMX19_04590 0.53 -0.5
973,016 - MPMX19_04590 0.53 +0.5
973,016 - MPMX19_04590 0.53 +1.1
973,016 - MPMX19_04590 0.53 +0.4
973,016 - MPMX19_04590 0.53 -0.1
973,016 - MPMX19_04590 0.53 -1.3
973,016 - MPMX19_04590 0.53 +1.4
973,147 + MPMX19_04590 0.69 -0.8
973,147 + MPMX19_04590 0.69 -1.6
973,147 + MPMX19_04590 0.69 +0.2
973,148 - MPMX19_04590 0.69 +1.8
973,148 - MPMX19_04590 0.69 -0.7
973,148 - MPMX19_04590 0.69 -0.5
973,533 + MPMX19_04591 0.14 +2.6
973,533 + MPMX19_04591 0.14 +0.5
973,534 - MPMX19_04591 0.14 -0.6
973,596 + MPMX19_04591 0.21 +0.5
973,596 + MPMX19_04591 0.21 -1.4
973,596 + MPMX19_04591 0.21 +0.1
973,596 + MPMX19_04591 0.21 -0.2
973,597 - MPMX19_04591 0.21 +0.0
973,597 - MPMX19_04591 0.21 -0.2
973,729 - MPMX19_04591 0.36 +0.7
973,992 + MPMX19_04591 0.65 -0.5
973,992 + MPMX19_04591 0.65 -1.6
973,992 + MPMX19_04591 0.65 +0.7
973,992 + MPMX19_04591 0.65 -0.5
973,992 + MPMX19_04591 0.65 -1.2
973,993 - MPMX19_04591 0.65 +0.2
973,993 - MPMX19_04591 0.65 -0.4
974,154 + MPMX19_04591 0.83 +0.0
974,154 + MPMX19_04591 0.83 +0.4
974,154 + MPMX19_04591 0.83 -0.2
974,154 + MPMX19_04591 0.83 -0.9
974,154 + MPMX19_04591 0.83 -0.1
974,154 + MPMX19_04591 0.83 -2.2
974,154 + MPMX19_04591 0.83 +0.0
974,154 + MPMX19_04591 0.83 -2.0
974,154 + MPMX19_04591 0.83 +0.2
974,155 - MPMX19_04591 0.84 -0.1
974,155 - MPMX19_04591 0.84 -2.3
974,155 - MPMX19_04591 0.84 -0.2
974,155 - MPMX19_04591 0.84 +0.2
974,155 - MPMX19_04591 0.84 -1.0
974,320 + -0.8

Or see this region's nucleotide sequence