Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04565

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04563 and MPMX19_04564 are separated by 53 nucleotidesMPMX19_04564 and MPMX19_04565 are separated by 134 nucleotidesMPMX19_04565 and MPMX19_04566 overlap by 112 nucleotidesMPMX19_04566 and MPMX19_04567 are separated by 79 nucleotides MPMX19_04563: MPMX19_04563 - hypothetical protein, at 944,440 to 944,754 _04563 MPMX19_04564: MPMX19_04564 - hypothetical protein, at 944,808 to 945,473 _04564 MPMX19_04565: MPMX19_04565 - HTH-type transcriptional regulator PgrR, at 945,608 to 946,528 _04565 MPMX19_04566: MPMX19_04566 - hypothetical protein, at 946,417 to 947,196 _04566 MPMX19_04567: MPMX19_04567 - hypothetical protein, at 947,276 to 947,656 _04567 Position (kb) 945 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 944.621 kb on + strand, within MPMX19_04563at 944.621 kb on + strand, within MPMX19_04563at 944.621 kb on + strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.622 kb on - strand, within MPMX19_04563at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.923 kb on + strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 944.924 kb on - strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.046 kb on + strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.047 kb on - strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.220 kb on + strand, within MPMX19_04564at 945.221 kb on - strand, within MPMX19_04564at 945.241 kb on + strand, within MPMX19_04564at 945.242 kb on - strand, within MPMX19_04564at 945.280 kb on + strand, within MPMX19_04564at 945.281 kb on - strand, within MPMX19_04564at 945.538 kb on - strandat 945.555 kb on - strandat 945.589 kb on + strandat 945.589 kb on + strandat 945.590 kb on - strandat 945.590 kb on - strandat 945.947 kb on + strand, within MPMX19_04565at 945.948 kb on + strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.948 kb on - strand, within MPMX19_04565at 945.959 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.118 kb on + strand, within MPMX19_04565at 946.119 kb on - strand, within MPMX19_04565at 946.119 kb on - strand, within MPMX19_04565at 946.574 kb on + strand, within MPMX19_04566at 946.574 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.712 kb on + strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.713 kb on - strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.747 kb on + strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.748 kb on - strand, within MPMX19_04566at 946.961 kb on + strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.962 kb on - strand, within MPMX19_04566at 946.994 kb on + strand, within MPMX19_04566at 946.994 kb on + strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 946.995 kb on - strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.012 kb on + strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.013 kb on - strand, within MPMX19_04566at 947.058 kb on - strand, within MPMX19_04566at 947.089 kb on - strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.090 kb on + strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.091 kb on - strand, within MPMX19_04566at 947.253 kb on + strandat 947.270 kb on + strandat 947.270 kb on + strandat 947.270 kb on + strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.271 kb on - strandat 947.277 kb on + strandat 947.277 kb on + strandat 947.277 kb on + strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strandat 947.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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944,621 + MPMX19_04563 0.57 +0.8
944,621 + MPMX19_04563 0.57 -1.9
944,621 + MPMX19_04563 0.57 -0.2
944,622 - MPMX19_04563 0.58 -2.3
944,622 - MPMX19_04563 0.58 -1.0
944,622 - MPMX19_04563 0.58 -1.6
944,923 + MPMX19_04564 0.17 -0.6
944,923 + MPMX19_04564 0.17 -0.7
944,923 + MPMX19_04564 0.17 +1.8
944,923 + MPMX19_04564 0.17 -0.9
944,923 + MPMX19_04564 0.17 -0.5
944,923 + MPMX19_04564 0.17 -1.2
944,923 + MPMX19_04564 0.17 -0.1
944,923 + MPMX19_04564 0.17 -0.5
944,923 + MPMX19_04564 0.17 +0.4
944,923 + MPMX19_04564 0.17 -1.1
944,923 + MPMX19_04564 0.17 -0.7
944,924 - MPMX19_04564 0.17 -0.4
944,924 - MPMX19_04564 0.17 -1.9
944,924 - MPMX19_04564 0.17 +0.5
944,924 - MPMX19_04564 0.17 -1.5
944,924 - MPMX19_04564 0.17 -0.7
944,924 - MPMX19_04564 0.17 -0.9
944,924 - MPMX19_04564 0.17 +0.1
944,924 - MPMX19_04564 0.17 -1.1
944,924 - MPMX19_04564 0.17 -1.5
944,924 - MPMX19_04564 0.17 -0.9
944,924 - MPMX19_04564 0.17 -1.7
944,924 - MPMX19_04564 0.17 -0.7
944,924 - MPMX19_04564 0.17 +0.5
944,924 - MPMX19_04564 0.17 +0.6
945,046 + MPMX19_04564 0.36 -1.2
945,046 + MPMX19_04564 0.36 -0.8
945,046 + MPMX19_04564 0.36 -0.2
945,047 - MPMX19_04564 0.36 -1.0
945,047 - MPMX19_04564 0.36 -0.5
945,047 - MPMX19_04564 0.36 +0.4
945,220 + MPMX19_04564 0.62 -0.8
945,220 + MPMX19_04564 0.62 -1.7
945,220 + MPMX19_04564 0.62 -1.7
945,220 + MPMX19_04564 0.62 +0.5
945,221 - MPMX19_04564 0.62 +0.2
945,241 + MPMX19_04564 0.65 -0.6
945,242 - MPMX19_04564 0.65 -1.4
945,280 + MPMX19_04564 0.71 +1.2
945,281 - MPMX19_04564 0.71 -0.9
945,538 - -1.2
945,555 - +1.5
945,589 + +0.3
945,589 + -0.1
945,590 - -1.5
945,590 - +0.2
945,947 + MPMX19_04565 0.37 -0.5
945,948 + MPMX19_04565 0.37 -1.5
945,948 - MPMX19_04565 0.37 -0.0
945,948 - MPMX19_04565 0.37 +0.1
945,948 - MPMX19_04565 0.37 -0.8
945,948 - MPMX19_04565 0.37 +1.6
945,948 - MPMX19_04565 0.37 +0.0
945,948 - MPMX19_04565 0.37 -0.1
945,959 + MPMX19_04565 0.38 +0.8
946,118 + MPMX19_04565 0.55 +0.2
946,118 + MPMX19_04565 0.55 +0.1
946,118 + MPMX19_04565 0.55 +0.5
946,118 + MPMX19_04565 0.55 +0.2
946,119 - MPMX19_04565 0.55 -1.4
946,119 - MPMX19_04565 0.55 -0.1
946,574 + MPMX19_04566 0.20 -0.8
946,574 + MPMX19_04566 0.20 -0.4
946,712 + MPMX19_04566 0.38 -0.2
946,712 + MPMX19_04566 0.38 +0.3
946,712 + MPMX19_04566 0.38 -1.0
946,712 + MPMX19_04566 0.38 -0.2
946,712 + MPMX19_04566 0.38 -0.9
946,713 - MPMX19_04566 0.38 -0.4
946,713 - MPMX19_04566 0.38 -0.2
946,713 - MPMX19_04566 0.38 +0.3
946,747 + MPMX19_04566 0.42 -1.0
946,747 + MPMX19_04566 0.42 +0.3
946,747 + MPMX19_04566 0.42 -0.2
946,747 + MPMX19_04566 0.42 -0.1
946,748 - MPMX19_04566 0.42 -0.3
946,748 - MPMX19_04566 0.42 +0.6
946,748 - MPMX19_04566 0.42 -0.6
946,748 - MPMX19_04566 0.42 -2.1
946,961 + MPMX19_04566 0.70 -1.8
946,962 - MPMX19_04566 0.70 -1.4
946,962 - MPMX19_04566 0.70 +0.5
946,962 - MPMX19_04566 0.70 -2.9
946,994 + MPMX19_04566 0.74 -0.0
946,994 + MPMX19_04566 0.74 -0.4
946,995 - MPMX19_04566 0.74 -0.9
946,995 - MPMX19_04566 0.74 +0.7
946,995 - MPMX19_04566 0.74 -0.7
947,012 + MPMX19_04566 0.76 +0.6
947,012 + MPMX19_04566 0.76 -0.7
947,012 + MPMX19_04566 0.76 -2.0
947,012 + MPMX19_04566 0.76 +1.4
947,012 + MPMX19_04566 0.76 -1.1
947,012 + MPMX19_04566 0.76 -0.8
947,012 + MPMX19_04566 0.76 +0.1
947,012 + MPMX19_04566 0.76 -1.0
947,012 + MPMX19_04566 0.76 -0.2
947,012 + MPMX19_04566 0.76 -0.5
947,012 + MPMX19_04566 0.76 +1.4
947,012 + MPMX19_04566 0.76 -1.6
947,012 + MPMX19_04566 0.76 -1.2
947,012 + MPMX19_04566 0.76 -0.0
947,013 - MPMX19_04566 0.76 -0.8
947,013 - MPMX19_04566 0.76 +1.2
947,013 - MPMX19_04566 0.76 -0.4
947,013 - MPMX19_04566 0.76 -0.4
947,013 - MPMX19_04566 0.76 +0.5
947,013 - MPMX19_04566 0.76 -0.5
947,013 - MPMX19_04566 0.76 +0.8
947,013 - MPMX19_04566 0.76 +0.1
947,013 - MPMX19_04566 0.76 -0.0
947,013 - MPMX19_04566 0.76 -1.7
947,013 - MPMX19_04566 0.76 -0.2
947,058 - MPMX19_04566 0.82 -0.7
947,089 - MPMX19_04566 0.86 -1.3
947,090 + MPMX19_04566 0.86 +0.2
947,090 + MPMX19_04566 0.86 +1.0
947,090 + MPMX19_04566 0.86 -0.2
947,090 + MPMX19_04566 0.86 -0.3
947,090 + MPMX19_04566 0.86 -0.5
947,090 + MPMX19_04566 0.86 -0.3
947,090 + MPMX19_04566 0.86 -0.2
947,090 + MPMX19_04566 0.86 -1.8
947,090 + MPMX19_04566 0.86 -0.9
947,090 + MPMX19_04566 0.86 -0.9
947,090 + MPMX19_04566 0.86 -0.1
947,090 + MPMX19_04566 0.86 -0.8
947,090 + MPMX19_04566 0.86 -0.9
947,090 + MPMX19_04566 0.86 -0.5
947,090 + MPMX19_04566 0.86 -1.2
947,091 - MPMX19_04566 0.86 +0.3
947,091 - MPMX19_04566 0.86 -1.0
947,091 - MPMX19_04566 0.86 -0.4
947,091 - MPMX19_04566 0.86 -0.8
947,091 - MPMX19_04566 0.86 +1.3
947,091 - MPMX19_04566 0.86 -0.2
947,091 - MPMX19_04566 0.86 -1.1
947,091 - MPMX19_04566 0.86 -0.5
947,091 - MPMX19_04566 0.86 +1.4
947,091 - MPMX19_04566 0.86 -0.2
947,091 - MPMX19_04566 0.86 +1.3
947,091 - MPMX19_04566 0.86 -1.0
947,091 - MPMX19_04566 0.86 -1.0
947,091 - MPMX19_04566 0.86 -0.3
947,091 - MPMX19_04566 0.86 -0.9
947,091 - MPMX19_04566 0.86 +0.9
947,091 - MPMX19_04566 0.86 -0.4
947,091 - MPMX19_04566 0.86 -0.5
947,091 - MPMX19_04566 0.86 -2.1
947,091 - MPMX19_04566 0.86 +1.2
947,091 - MPMX19_04566 0.86 -0.5
947,091 - MPMX19_04566 0.86 -1.0
947,253 + +0.1
947,270 + +0.1
947,270 + +0.6
947,270 + +0.8
947,271 - -0.7
947,271 - -2.0
947,271 - -0.8
947,271 - +0.2
947,271 - -0.5
947,277 + +0.5
947,277 + -0.0
947,277 + -0.2
947,278 - -0.4
947,278 - -1.8
947,278 - -0.4
947,278 - +0.9
947,278 - +0.8
947,278 - -1.2
947,278 - +0.5
947,278 - -0.8
947,278 - +1.5

Or see this region's nucleotide sequence