Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04554

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04552 and MPMX19_04553 are separated by 47 nucleotidesMPMX19_04553 and MPMX19_04554 are separated by 229 nucleotidesMPMX19_04554 and MPMX19_04555 are separated by 410 nucleotides MPMX19_04552: MPMX19_04552 - D-hydantoinase, at 928,537 to 929,961 _04552 MPMX19_04553: MPMX19_04553 - hypothetical protein, at 930,009 to 930,425 _04553 MPMX19_04554: MPMX19_04554 - Response regulator PleD, at 930,655 to 931,371 _04554 MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606 _04555 Position (kb) 930 931 932Strain fitness (log2 ratio) -2 -1 0 1 2at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.680 kb on + strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.681 kb on - strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.740 kb on + strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.741 kb on - strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.797 kb on + strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.798 kb on - strand, within MPMX19_04552at 929.806 kb on + strand, within MPMX19_04552at 930.238 kb on - strand, within MPMX19_04553at 930.238 kb on - strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.276 kb on + strand, within MPMX19_04553at 930.277 kb on - strand, within MPMX19_04553at 930.563 kb on + strandat 930.563 kb on + strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.564 kb on - strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.656 kb on + strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.657 kb on - strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.701 kb on + strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.702 kb on - strandat 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.766 kb on + strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.767 kb on - strand, within MPMX19_04554at 930.860 kb on + strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.861 kb on - strand, within MPMX19_04554at 930.932 kb on - strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.996 kb on + strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 930.997 kb on - strand, within MPMX19_04554at 931.310 kb on + strandat 931.310 kb on + strandat 931.310 kb on + strandat 931.503 kb on + strandat 931.504 kb on - strandat 931.530 kb on + strandat 931.530 kb on + strandat 931.530 kb on + strandat 931.530 kb on + strandat 931.531 kb on - strandat 931.531 kb on - strandat 931.532 kb on + strandat 931.532 kb on + strandat 931.532 kb on + strandat 931.533 kb on - strandat 931.533 kb on - strandat 931.533 kb on - strandat 931.570 kb on + strandat 931.570 kb on + strandat 931.570 kb on + strandat 931.573 kb on + strandat 931.573 kb on + strandat 931.573 kb on + strandat 931.574 kb on - strandat 931.675 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.900 kb on + strandat 931.901 kb on - strandat 931.901 kb on - strandat 931.901 kb on - strandat 931.901 kb on - strandat 931.901 kb on - strandat 931.901 kb on - strandat 932.293 kb on + strand, within MPMX19_04555at 932.294 kb on - strand, within MPMX19_04555at 932.294 kb on - strand, within MPMX19_04555

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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929,680 + MPMX19_04552 0.80 -0.1
929,680 + MPMX19_04552 0.80 +0.8
929,680 + MPMX19_04552 0.80 -0.6
929,680 + MPMX19_04552 0.80 +0.8
929,680 + MPMX19_04552 0.80 -1.0
929,681 - MPMX19_04552 0.80 -0.7
929,681 - MPMX19_04552 0.80 +0.0
929,681 - MPMX19_04552 0.80 -0.1
929,681 - MPMX19_04552 0.80 +1.1
929,681 - MPMX19_04552 0.80 +0.0
929,681 - MPMX19_04552 0.80 +1.0
929,681 - MPMX19_04552 0.80 -1.0
929,681 - MPMX19_04552 0.80 -0.3
929,740 + MPMX19_04552 0.84 +0.2
929,740 + MPMX19_04552 0.84 -1.4
929,740 + MPMX19_04552 0.84 -1.3
929,740 + MPMX19_04552 0.84 -0.6
929,740 + MPMX19_04552 0.84 +0.2
929,741 - MPMX19_04552 0.84 +0.2
929,741 - MPMX19_04552 0.84 -0.5
929,797 + MPMX19_04552 0.88 -1.0
929,797 + MPMX19_04552 0.88 +0.5
929,797 + MPMX19_04552 0.88 -0.0
929,797 + MPMX19_04552 0.88 +1.2
929,798 - MPMX19_04552 0.88 -0.1
929,798 - MPMX19_04552 0.88 -1.5
929,798 - MPMX19_04552 0.88 -1.7
929,798 - MPMX19_04552 0.88 -0.8
929,806 + MPMX19_04552 0.89 -0.7
930,238 - MPMX19_04553 0.55 +0.2
930,238 - MPMX19_04553 0.55 -0.9
930,276 + MPMX19_04553 0.64 -1.5
930,276 + MPMX19_04553 0.64 -0.0
930,277 - MPMX19_04553 0.64 -0.3
930,563 + -0.4
930,563 + -0.3
930,564 - +0.3
930,564 - -1.9
930,564 - -0.1
930,656 + -0.2
930,656 + +0.2
930,656 + +0.1
930,656 + -0.7
930,656 + +0.5
930,657 - +0.4
930,657 - +0.1
930,657 - +1.0
930,701 + -0.1
930,701 + +0.4
930,701 + +1.3
930,702 - +0.4
930,702 - -0.8
930,702 - +0.4
930,766 + MPMX19_04554 0.15 -1.0
930,766 + MPMX19_04554 0.15 -1.4
930,766 + MPMX19_04554 0.15 +0.3
930,767 - MPMX19_04554 0.16 -0.2
930,767 - MPMX19_04554 0.16 +1.2
930,860 + MPMX19_04554 0.29 -1.0
930,861 - MPMX19_04554 0.29 -0.2
930,861 - MPMX19_04554 0.29 +0.3
930,861 - MPMX19_04554 0.29 -0.0
930,861 - MPMX19_04554 0.29 -0.9
930,932 - MPMX19_04554 0.39 -0.5
930,996 + MPMX19_04554 0.48 -0.2
930,996 + MPMX19_04554 0.48 -0.8
930,996 + MPMX19_04554 0.48 -2.1
930,997 - MPMX19_04554 0.48 -0.2
930,997 - MPMX19_04554 0.48 +0.1
930,997 - MPMX19_04554 0.48 -0.8
930,997 - MPMX19_04554 0.48 -1.8
930,997 - MPMX19_04554 0.48 +1.8
930,997 - MPMX19_04554 0.48 -0.8
931,310 + -1.5
931,310 + -2.5
931,310 + +0.5
931,503 + -1.7
931,504 - -0.1
931,530 + -0.3
931,530 + +0.2
931,530 + -0.9
931,530 + -2.1
931,531 - +1.8
931,531 - +0.8
931,532 + +0.4
931,532 + -0.5
931,532 + -1.1
931,533 - -0.3
931,533 - -2.5
931,533 - -0.8
931,570 + -0.3
931,570 + -0.2
931,570 + -0.4
931,573 + -0.1
931,573 + -0.9
931,573 + +0.2
931,574 - -0.0
931,675 + -1.8
931,900 + -1.7
931,900 + -0.5
931,900 + -0.2
931,900 + -0.4
931,900 + -0.2
931,900 + +0.8
931,900 + +1.2
931,900 + -1.2
931,900 + +0.2
931,901 - +0.3
931,901 - -1.8
931,901 - -0.5
931,901 - -0.5
931,901 - +1.0
931,901 - -0.5
932,293 + MPMX19_04555 0.13 +0.6
932,294 - MPMX19_04555 0.13 +1.3
932,294 - MPMX19_04555 0.13 -0.9

Or see this region's nucleotide sequence