Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04544 and MPMX19_04545 are separated by 44 nucleotides MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides MPMX19_04546 and MPMX19_04547 are separated by 63 nucleotides
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087
_04547
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 920.576 kb on + strand at 920.576 kb on + strand at 920.577 kb on - strand at 920.938 kb on + strand, within MPMX19_04545 at 920.938 kb on + strand, within MPMX19_04545 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand at 921.864 kb on + strand, within MPMX19_04546 at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.812 kb on + strand, within MPMX19_04547 at 922.812 kb on + strand, within MPMX19_04547 at 922.813 kb on - strand, within MPMX19_04547 at 922.813 kb on - strand, within MPMX19_04547 at 922.896 kb on + strand, within MPMX19_04547 at 922.896 kb on + strand, within MPMX19_04547 at 922.897 kb on - strand, within MPMX19_04547
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 920,576 + +0.5 920,576 + +0.4 920,577 - -0.1 920,938 + MPMX19_04545 0.60 -0.5 920,938 + MPMX19_04545 0.60 -0.7 921,134 - MPMX19_04545 0.89 -0.1 921,206 + -2.5 921,206 + -0.4 921,206 + +0.4 921,206 + +0.2 921,206 + -0.5 921,206 + -0.7 921,206 + -0.1 921,206 + -1.2 921,207 - -0.6 921,207 - +0.5 921,207 - -0.5 921,207 - +0.1 921,207 - -0.3 921,207 - +0.2 921,297 + -1.7 921,864 + MPMX19_04546 0.74 +0.8 922,023 + +0.8 922,023 + +1.1 922,023 + -0.2 922,023 + -1.0 922,023 + -0.2 922,024 - -2.0 922,024 - -0.4 922,024 - -1.3 922,024 - -0.2 922,024 - -0.6 922,770 + MPMX19_04547 0.22 +0.1 922,770 + MPMX19_04547 0.22 -1.5 922,770 + MPMX19_04547 0.22 -1.8 922,770 + MPMX19_04547 0.22 -1.1 922,770 + MPMX19_04547 0.22 -1.7 922,770 + MPMX19_04547 0.22 -0.5 922,770 + MPMX19_04547 0.22 -0.2 922,770 + MPMX19_04547 0.22 +0.9 922,771 - MPMX19_04547 0.22 +0.1 922,771 - MPMX19_04547 0.22 +0.6 922,771 - MPMX19_04547 0.22 -1.2 922,771 - MPMX19_04547 0.22 -2.9 922,771 - MPMX19_04547 0.22 -0.4 922,771 - MPMX19_04547 0.22 -1.0 922,771 - MPMX19_04547 0.22 +1.2 922,771 - MPMX19_04547 0.22 +0.9 922,771 - MPMX19_04547 0.22 -0.7 922,771 - MPMX19_04547 0.22 -1.4 922,771 - MPMX19_04547 0.22 +0.2 922,771 - MPMX19_04547 0.22 -2.1 922,771 - MPMX19_04547 0.22 -0.1 922,771 - MPMX19_04547 0.22 -1.9 922,771 - MPMX19_04547 0.22 -0.0 922,771 - MPMX19_04547 0.22 -0.9 922,771 - MPMX19_04547 0.22 +0.5 922,771 - MPMX19_04547 0.22 -1.3 922,771 - MPMX19_04547 0.22 -0.0 922,771 - MPMX19_04547 0.22 -1.0 922,771 - MPMX19_04547 0.22 +0.1 922,812 + MPMX19_04547 0.23 +0.2 922,812 + MPMX19_04547 0.23 -1.2 922,813 - MPMX19_04547 0.23 +1.6 922,813 - MPMX19_04547 0.23 +1.8 922,896 + MPMX19_04547 0.26 -1.5 922,896 + MPMX19_04547 0.26 +0.9 922,897 - MPMX19_04547 0.26 -0.2
Or see this region's nucleotide sequence