Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04537

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04536 and MPMX19_04537 are separated by 46 nucleotidesMPMX19_04537 and MPMX19_04538 are separated by 252 nucleotides MPMX19_04536: MPMX19_04536 - D-amino acid dehydrogenase 1, at 909,444 to 910,691 _04536 MPMX19_04537: MPMX19_04537 - 2-iminobutanoate/2-iminopropanoate deaminase, at 910,738 to 911,088 _04537 MPMX19_04538: MPMX19_04538 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 911,341 to 912,474 _04538 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2 3at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.787 kb on + strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.788 kb on - strand, within MPMX19_04536at 909.862 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.865 kb on + strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.866 kb on - strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.880 kb on + strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.881 kb on - strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.946 kb on + strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 909.947 kb on - strand, within MPMX19_04536at 910.034 kb on - strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.120 kb on + strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.121 kb on - strand, within MPMX19_04536at 910.270 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.276 kb on + strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.277 kb on - strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.351 kb on + strand, within MPMX19_04536at 910.352 kb on - strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.534 kb on + strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.535 kb on - strand, within MPMX19_04536at 910.642 kb on + strandat 910.642 kb on + strandat 910.643 kb on - strandat 910.643 kb on - strandat 911.021 kb on + strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.022 kb on - strand, within MPMX19_04537at 911.073 kb on + strandat 911.073 kb on + strandat 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.671 kb on + strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.672 kb on - strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.704 kb on + strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.705 kb on - strand, within MPMX19_04538at 911.836 kb on + strand, within MPMX19_04538at 911.837 kb on - strand, within MPMX19_04538at 911.884 kb on + strand, within MPMX19_04538at 911.899 kb on + strand, within MPMX19_04538at 911.980 kb on + strand, within MPMX19_04538at 911.981 kb on - strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.031 kb on + strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538at 912.032 kb on - strand, within MPMX19_04538

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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909,787 + MPMX19_04536 0.27 -1.3
909,787 + MPMX19_04536 0.27 +0.1
909,787 + MPMX19_04536 0.27 +0.8
909,788 - MPMX19_04536 0.28 +0.5
909,788 - MPMX19_04536 0.28 +0.4
909,862 + MPMX19_04536 0.33 +0.2
909,865 + MPMX19_04536 0.34 -0.0
909,865 + MPMX19_04536 0.34 +0.5
909,865 + MPMX19_04536 0.34 -1.7
909,865 + MPMX19_04536 0.34 +3.2
909,866 - MPMX19_04536 0.34 +0.5
909,866 - MPMX19_04536 0.34 +0.9
909,880 + MPMX19_04536 0.35 -2.2
909,880 + MPMX19_04536 0.35 -0.2
909,881 - MPMX19_04536 0.35 +0.6
909,881 - MPMX19_04536 0.35 -0.3
909,946 + MPMX19_04536 0.40 +0.5
909,946 + MPMX19_04536 0.40 -0.5
909,946 + MPMX19_04536 0.40 +0.0
909,946 + MPMX19_04536 0.40 +0.2
909,946 + MPMX19_04536 0.40 +0.7
909,946 + MPMX19_04536 0.40 +0.4
909,946 + MPMX19_04536 0.40 -0.2
909,946 + MPMX19_04536 0.40 -2.1
909,946 + MPMX19_04536 0.40 -0.3
909,946 + MPMX19_04536 0.40 +0.6
909,946 + MPMX19_04536 0.40 -0.5
909,947 - MPMX19_04536 0.40 -0.8
909,947 - MPMX19_04536 0.40 -0.5
909,947 - MPMX19_04536 0.40 +1.4
909,947 - MPMX19_04536 0.40 -1.4
909,947 - MPMX19_04536 0.40 -0.2
909,947 - MPMX19_04536 0.40 -0.5
909,947 - MPMX19_04536 0.40 +0.5
909,947 - MPMX19_04536 0.40 -0.7
909,947 - MPMX19_04536 0.40 +0.5
909,947 - MPMX19_04536 0.40 +0.5
910,034 - MPMX19_04536 0.47 -0.7
910,120 + MPMX19_04536 0.54 -0.8
910,120 + MPMX19_04536 0.54 -1.0
910,120 + MPMX19_04536 0.54 -0.0
910,120 + MPMX19_04536 0.54 -1.7
910,120 + MPMX19_04536 0.54 -0.1
910,120 + MPMX19_04536 0.54 -2.0
910,120 + MPMX19_04536 0.54 +1.0
910,120 + MPMX19_04536 0.54 +0.0
910,120 + MPMX19_04536 0.54 +0.1
910,120 + MPMX19_04536 0.54 +1.5
910,120 + MPMX19_04536 0.54 -0.0
910,120 + MPMX19_04536 0.54 +0.8
910,120 + MPMX19_04536 0.54 -0.4
910,121 - MPMX19_04536 0.54 +0.4
910,121 - MPMX19_04536 0.54 -0.0
910,121 - MPMX19_04536 0.54 -0.5
910,121 - MPMX19_04536 0.54 -0.9
910,121 - MPMX19_04536 0.54 +0.5
910,121 - MPMX19_04536 0.54 -1.2
910,121 - MPMX19_04536 0.54 -1.0
910,121 - MPMX19_04536 0.54 -0.2
910,121 - MPMX19_04536 0.54 -0.5
910,121 - MPMX19_04536 0.54 +0.0
910,121 - MPMX19_04536 0.54 +0.5
910,121 - MPMX19_04536 0.54 +0.2
910,270 + MPMX19_04536 0.66 -0.0
910,276 + MPMX19_04536 0.67 -0.9
910,276 + MPMX19_04536 0.67 -0.2
910,276 + MPMX19_04536 0.67 -0.4
910,276 + MPMX19_04536 0.67 -1.7
910,276 + MPMX19_04536 0.67 +0.0
910,277 - MPMX19_04536 0.67 -0.5
910,277 - MPMX19_04536 0.67 -0.1
910,351 + MPMX19_04536 0.73 +0.6
910,351 + MPMX19_04536 0.73 -0.9
910,352 - MPMX19_04536 0.73 +0.5
910,534 + MPMX19_04536 0.87 -1.0
910,534 + MPMX19_04536 0.87 -0.5
910,534 + MPMX19_04536 0.87 +0.5
910,534 + MPMX19_04536 0.87 -1.2
910,534 + MPMX19_04536 0.87 -1.7
910,534 + MPMX19_04536 0.87 -2.7
910,535 - MPMX19_04536 0.87 +0.5
910,535 - MPMX19_04536 0.87 -0.5
910,535 - MPMX19_04536 0.87 -1.6
910,642 + -0.7
910,642 + -0.5
910,643 - -0.8
910,643 - -1.4
911,021 + MPMX19_04537 0.81 -1.0
911,022 - MPMX19_04537 0.81 -0.0
911,022 - MPMX19_04537 0.81 -1.4
911,073 + -0.8
911,073 + -1.4
911,671 + MPMX19_04538 0.29 -0.3
911,671 + MPMX19_04538 0.29 +0.2
911,671 + MPMX19_04538 0.29 -0.6
911,671 + MPMX19_04538 0.29 +0.3
911,671 + MPMX19_04538 0.29 -0.2
911,671 + MPMX19_04538 0.29 +0.6
911,671 + MPMX19_04538 0.29 -0.0
911,671 + MPMX19_04538 0.29 +1.8
911,671 + MPMX19_04538 0.29 +0.6
911,671 + MPMX19_04538 0.29 +0.4
911,672 - MPMX19_04538 0.29 -1.4
911,672 - MPMX19_04538 0.29 +1.0
911,672 - MPMX19_04538 0.29 +1.5
911,672 - MPMX19_04538 0.29 -0.2
911,672 - MPMX19_04538 0.29 +0.0
911,704 + MPMX19_04538 0.32 -0.1
911,704 + MPMX19_04538 0.32 +3.4
911,704 + MPMX19_04538 0.32 -0.4
911,705 - MPMX19_04538 0.32 -0.0
911,705 - MPMX19_04538 0.32 +0.2
911,705 - MPMX19_04538 0.32 -0.8
911,705 - MPMX19_04538 0.32 -1.9
911,836 + MPMX19_04538 0.44 +0.1
911,837 - MPMX19_04538 0.44 -1.1
911,884 + MPMX19_04538 0.48 -0.9
911,899 + MPMX19_04538 0.49 -0.4
911,980 + MPMX19_04538 0.56 +0.0
911,981 - MPMX19_04538 0.56 +0.2
912,031 + MPMX19_04538 0.61 -1.5
912,031 + MPMX19_04538 0.61 +0.4
912,031 + MPMX19_04538 0.61 +0.1
912,031 + MPMX19_04538 0.61 +0.5
912,031 + MPMX19_04538 0.61 -1.0
912,031 + MPMX19_04538 0.61 -0.8
912,032 - MPMX19_04538 0.61 -0.8
912,032 - MPMX19_04538 0.61 +1.8
912,032 - MPMX19_04538 0.61 +0.4
912,032 - MPMX19_04538 0.61 +0.3
912,032 - MPMX19_04538 0.61 -1.9

Or see this region's nucleotide sequence