Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04528

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04527 and MPMX19_04528 are separated by 97 nucleotidesMPMX19_04528 and MPMX19_04529 are separated by 108 nucleotidesMPMX19_04529 and MPMX19_04530 are separated by 41 nucleotides MPMX19_04527: MPMX19_04527 - IS5 family transposase IS4811, at 900,342 to 901,292 _04527 MPMX19_04528: MPMX19_04528 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 901,390 to 902,139 _04528 MPMX19_04529: MPMX19_04529 - hypothetical protein, at 902,248 to 902,730 _04529 MPMX19_04530: MPMX19_04530 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 902,772 to 903,656 _04530 Position (kb) 901 902 903Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 900.397 kb on + strandat 900.397 kb on + strandat 900.397 kb on + strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.398 kb on - strandat 900.461 kb on - strand, within MPMX19_04527at 900.507 kb on + strand, within MPMX19_04527at 900.508 kb on - strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.547 kb on + strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.548 kb on - strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 900.756 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.171 kb on + strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.172 kb on - strand, within MPMX19_04527at 901.331 kb on + strandat 901.331 kb on + strandat 901.332 kb on - strandat 901.333 kb on + strandat 901.334 kb on - strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.354 kb on + strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.355 kb on - strandat 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.837 kb on + strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.838 kb on - strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528at 901.969 kb on + strand, within MPMX19_04528at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.485 kb on + strand, within MPMX19_04529at 902.486 kb on - strand, within MPMX19_04529at 902.486 kb on - strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.509 kb on + strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.510 kb on - strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.617 kb on + strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.618 kb on - strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.629 kb on + strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.630 kb on - strand, within MPMX19_04529at 902.877 kb on + strand, within MPMX19_04530at 902.878 kb on - strand, within MPMX19_04530at 902.878 kb on - strand, within MPMX19_04530at 903.047 kb on + strand, within MPMX19_04530at 903.048 kb on - strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.073 kb on + strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.074 kb on - strand, within MPMX19_04530at 903.136 kb on + strand, within MPMX19_04530at 903.137 kb on - strand, within MPMX19_04530at 903.137 kb on - strand, within MPMX19_04530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
900,397 + -1.9
900,397 + -1.6
900,397 + -0.4
900,398 - +0.5
900,398 - -0.2
900,398 - +0.3
900,398 - +1.8
900,398 - -0.0
900,398 - -0.8
900,398 - -1.4
900,461 - MPMX19_04527 0.13 -1.2
900,507 + MPMX19_04527 0.17 -0.2
900,508 - MPMX19_04527 0.17 +1.8
900,547 + MPMX19_04527 0.22 -2.6
900,547 + MPMX19_04527 0.22 +0.8
900,547 + MPMX19_04527 0.22 -0.4
900,548 - MPMX19_04527 0.22 -2.1
900,548 - MPMX19_04527 0.22 -0.0
900,548 - MPMX19_04527 0.22 +1.1
900,548 - MPMX19_04527 0.22 -0.2
900,548 - MPMX19_04527 0.22 -1.0
900,548 - MPMX19_04527 0.22 -0.5
900,548 - MPMX19_04527 0.22 -1.4
900,548 - MPMX19_04527 0.22 -0.5
900,756 + MPMX19_04527 0.44 +0.5
900,756 + MPMX19_04527 0.44 -1.4
900,756 + MPMX19_04527 0.44 +0.1
901,171 + MPMX19_04527 0.87 -1.7
901,171 + MPMX19_04527 0.87 -1.0
901,171 + MPMX19_04527 0.87 -1.5
901,171 + MPMX19_04527 0.87 -0.5
901,172 - MPMX19_04527 0.87 -0.8
901,172 - MPMX19_04527 0.87 -0.9
901,172 - MPMX19_04527 0.87 +0.0
901,172 - MPMX19_04527 0.87 -0.5
901,172 - MPMX19_04527 0.87 +0.8
901,172 - MPMX19_04527 0.87 -0.1
901,172 - MPMX19_04527 0.87 +0.7
901,331 + +1.8
901,331 + -1.7
901,332 - +1.2
901,333 + -1.4
901,334 - -0.5
901,354 + -1.7
901,354 + -0.2
901,354 + +0.1
901,354 + -0.7
901,354 + -0.3
901,354 + -0.7
901,354 + +0.5
901,355 - -1.4
901,355 - -0.4
901,355 - -1.0
901,355 - +0.8
901,355 - -0.7
901,355 - +0.8
901,355 - +0.5
901,355 - -0.6
901,837 + MPMX19_04528 0.60 -3.0
901,837 + MPMX19_04528 0.60 -1.3
901,837 + MPMX19_04528 0.60 -1.5
901,837 + MPMX19_04528 0.60 +1.2
901,837 + MPMX19_04528 0.60 +1.4
901,837 + MPMX19_04528 0.60 -0.0
901,837 + MPMX19_04528 0.60 +1.0
901,837 + MPMX19_04528 0.60 +0.9
901,837 + MPMX19_04528 0.60 -1.4
901,837 + MPMX19_04528 0.60 -1.3
901,837 + MPMX19_04528 0.60 -1.4
901,837 + MPMX19_04528 0.60 +0.2
901,838 - MPMX19_04528 0.60 -1.2
901,838 - MPMX19_04528 0.60 -1.7
901,838 - MPMX19_04528 0.60 +0.3
901,838 - MPMX19_04528 0.60 +1.5
901,838 - MPMX19_04528 0.60 -1.5
901,838 - MPMX19_04528 0.60 -1.4
901,838 - MPMX19_04528 0.60 -0.3
901,969 + MPMX19_04528 0.77 +0.5
901,969 + MPMX19_04528 0.77 -0.3
902,485 + MPMX19_04529 0.49 -1.0
902,485 + MPMX19_04529 0.49 -0.2
902,485 + MPMX19_04529 0.49 +0.6
902,485 + MPMX19_04529 0.49 -0.5
902,485 + MPMX19_04529 0.49 -0.8
902,485 + MPMX19_04529 0.49 +0.5
902,485 + MPMX19_04529 0.49 +0.3
902,486 - MPMX19_04529 0.49 -1.7
902,486 - MPMX19_04529 0.49 -0.1
902,509 + MPMX19_04529 0.54 +0.8
902,509 + MPMX19_04529 0.54 +0.5
902,509 + MPMX19_04529 0.54 +0.3
902,509 + MPMX19_04529 0.54 -0.4
902,509 + MPMX19_04529 0.54 +0.7
902,509 + MPMX19_04529 0.54 -1.4
902,510 - MPMX19_04529 0.54 -0.2
902,510 - MPMX19_04529 0.54 -0.7
902,510 - MPMX19_04529 0.54 -0.8
902,510 - MPMX19_04529 0.54 -0.8
902,617 + MPMX19_04529 0.76 -0.2
902,617 + MPMX19_04529 0.76 -0.8
902,617 + MPMX19_04529 0.76 +0.8
902,617 + MPMX19_04529 0.76 -0.2
902,618 - MPMX19_04529 0.77 +0.3
902,618 - MPMX19_04529 0.77 -0.1
902,618 - MPMX19_04529 0.77 -0.3
902,629 + MPMX19_04529 0.79 +0.0
902,629 + MPMX19_04529 0.79 +1.0
902,629 + MPMX19_04529 0.79 -0.1
902,629 + MPMX19_04529 0.79 -1.2
902,629 + MPMX19_04529 0.79 +1.3
902,629 + MPMX19_04529 0.79 -0.2
902,629 + MPMX19_04529 0.79 -0.2
902,629 + MPMX19_04529 0.79 -0.5
902,629 + MPMX19_04529 0.79 -2.1
902,630 - MPMX19_04529 0.79 -0.3
902,630 - MPMX19_04529 0.79 -0.5
902,630 - MPMX19_04529 0.79 -0.0
902,630 - MPMX19_04529 0.79 -0.9
902,630 - MPMX19_04529 0.79 -0.9
902,630 - MPMX19_04529 0.79 -0.7
902,630 - MPMX19_04529 0.79 +0.4
902,630 - MPMX19_04529 0.79 -1.1
902,630 - MPMX19_04529 0.79 +0.5
902,630 - MPMX19_04529 0.79 -2.2
902,630 - MPMX19_04529 0.79 +0.9
902,630 - MPMX19_04529 0.79 -0.1
902,630 - MPMX19_04529 0.79 -0.7
902,630 - MPMX19_04529 0.79 +0.2
902,630 - MPMX19_04529 0.79 -0.4
902,877 + MPMX19_04530 0.12 -1.7
902,878 - MPMX19_04530 0.12 +0.4
902,878 - MPMX19_04530 0.12 +0.8
903,047 + MPMX19_04530 0.31 -0.3
903,048 - MPMX19_04530 0.31 -0.8
903,073 + MPMX19_04530 0.34 -1.0
903,073 + MPMX19_04530 0.34 +0.6
903,073 + MPMX19_04530 0.34 +0.5
903,073 + MPMX19_04530 0.34 -0.3
903,073 + MPMX19_04530 0.34 -0.1
903,074 - MPMX19_04530 0.34 -0.3
903,074 - MPMX19_04530 0.34 -1.9
903,074 - MPMX19_04530 0.34 -0.4
903,136 + MPMX19_04530 0.41 -1.0
903,137 - MPMX19_04530 0.41 -1.0
903,137 - MPMX19_04530 0.41 +0.2

Or see this region's nucleotide sequence