Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04519 and MPMX19_04520 are separated by 10 nucleotides MPMX19_04520 and MPMX19_04521 overlap by 4 nucleotides MPMX19_04521 and MPMX19_04522 overlap by 4 nucleotides MPMX19_04522 and MPMX19_04523 are separated by 60 nucleotides
MPMX19_04519: MPMX19_04519 - hypothetical protein, at 892,573 to 893,742
_04519
MPMX19_04520: MPMX19_04520 - hypothetical protein, at 893,753 to 894,184
_04520
MPMX19_04521: MPMX19_04521 - Bifunctional protein PaaZ, at 894,181 to 894,642
_04521
MPMX19_04522: MPMX19_04522 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 894,639 to 895,397
_04522
MPMX19_04523: MPMX19_04523 - hypothetical protein, at 895,458 to 896,513
_04523
Position (kb) 894
895 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.290 kb on + strand, within MPMX19_04519 at 893.290 kb on + strand, within MPMX19_04519 at 893.291 kb on - strand, within MPMX19_04519 at 893.291 kb on - strand, within MPMX19_04519 at 893.434 kb on + strand, within MPMX19_04519 at 893.434 kb on + strand, within MPMX19_04519 at 893.435 kb on - strand, within MPMX19_04519 at 893.435 kb on - strand, within MPMX19_04519 at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.740 kb on + strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.741 kb on - strand at 893.876 kb on + strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.877 kb on - strand, within MPMX19_04520 at 893.885 kb on + strand, within MPMX19_04520 at 893.885 kb on + strand, within MPMX19_04520 at 893.886 kb on - strand, within MPMX19_04520 at 893.966 kb on + strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 893.967 kb on - strand, within MPMX19_04520 at 894.005 kb on + strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.006 kb on - strand, within MPMX19_04520 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.306 kb on + strand, within MPMX19_04521 at 894.307 kb on - strand, within MPMX19_04521 at 894.345 kb on + strand, within MPMX19_04521 at 894.345 kb on + strand, within MPMX19_04521 at 894.346 kb on - strand, within MPMX19_04521 at 894.481 kb on + strand, within MPMX19_04521 at 894.481 kb on + strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.482 kb on - strand, within MPMX19_04521 at 894.826 kb on + strand, within MPMX19_04522 at 894.826 kb on + strand, within MPMX19_04522 at 894.827 kb on - strand, within MPMX19_04522 at 894.827 kb on - strand, within MPMX19_04522 at 895.107 kb on + strand, within MPMX19_04522 at 895.107 kb on + strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.108 kb on - strand, within MPMX19_04522 at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.341 kb on + strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.342 kb on - strand at 895.392 kb on - strand at 895.393 kb on - strand at 895.393 kb on - strand at 895.393 kb on - strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.428 kb on + strand at 895.429 kb on - strand at 895.429 kb on - strand at 895.581 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.617 kb on + strand, within MPMX19_04523 at 895.618 kb on - strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.629 kb on + strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523 at 895.630 kb on - strand, within MPMX19_04523
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 893,290 + MPMX19_04519 0.61 -0.7 893,290 + MPMX19_04519 0.61 -0.2 893,291 - MPMX19_04519 0.61 +0.6 893,291 - MPMX19_04519 0.61 -1.0 893,434 + MPMX19_04519 0.74 -0.3 893,434 + MPMX19_04519 0.74 +1.5 893,435 - MPMX19_04519 0.74 -0.4 893,435 - MPMX19_04519 0.74 -0.8 893,740 + -1.7 893,740 + -1.5 893,740 + -0.4 893,740 + -0.5 893,740 + +0.8 893,741 - +2.0 893,741 - -1.5 893,741 - -1.9 893,741 - -1.0 893,741 - -1.2 893,741 - -1.7 893,741 - -0.4 893,876 + MPMX19_04520 0.28 -1.8 893,877 - MPMX19_04520 0.29 +0.2 893,877 - MPMX19_04520 0.29 -1.8 893,877 - MPMX19_04520 0.29 +0.2 893,885 + MPMX19_04520 0.31 -0.0 893,885 + MPMX19_04520 0.31 -1.2 893,886 - MPMX19_04520 0.31 +1.0 893,966 + MPMX19_04520 0.49 +0.2 893,967 - MPMX19_04520 0.50 +0.3 893,967 - MPMX19_04520 0.50 -2.0 893,967 - MPMX19_04520 0.50 +0.1 893,967 - MPMX19_04520 0.50 -0.6 894,005 + MPMX19_04520 0.58 -0.7 894,006 - MPMX19_04520 0.59 +0.4 894,006 - MPMX19_04520 0.59 -0.6 894,006 - MPMX19_04520 0.59 -2.1 894,006 - MPMX19_04520 0.59 -0.8 894,006 - MPMX19_04520 0.59 +0.3 894,306 + MPMX19_04521 0.27 -0.8 894,306 + MPMX19_04521 0.27 -0.2 894,306 + MPMX19_04521 0.27 -0.0 894,306 + MPMX19_04521 0.27 -2.1 894,306 + MPMX19_04521 0.27 +0.2 894,306 + MPMX19_04521 0.27 -1.9 894,306 + MPMX19_04521 0.27 +1.3 894,306 + MPMX19_04521 0.27 -1.9 894,306 + MPMX19_04521 0.27 -0.5 894,306 + MPMX19_04521 0.27 -0.7 894,307 - MPMX19_04521 0.27 -0.5 894,345 + MPMX19_04521 0.35 -0.6 894,345 + MPMX19_04521 0.35 -1.2 894,346 - MPMX19_04521 0.36 -0.4 894,481 + MPMX19_04521 0.65 -1.4 894,481 + MPMX19_04521 0.65 -2.0 894,482 - MPMX19_04521 0.65 +1.0 894,482 - MPMX19_04521 0.65 -0.8 894,482 - MPMX19_04521 0.65 -0.5 894,826 + MPMX19_04522 0.25 -1.0 894,826 + MPMX19_04522 0.25 -0.7 894,827 - MPMX19_04522 0.25 +0.5 894,827 - MPMX19_04522 0.25 -1.8 895,107 + MPMX19_04522 0.62 -2.5 895,107 + MPMX19_04522 0.62 -0.1 895,108 - MPMX19_04522 0.62 +0.2 895,108 - MPMX19_04522 0.62 -0.2 895,108 - MPMX19_04522 0.62 -1.3 895,108 - MPMX19_04522 0.62 -0.5 895,341 + +1.5 895,341 + -0.5 895,341 + +0.7 895,341 + +0.8 895,341 + -0.9 895,341 + -0.3 895,341 + +0.6 895,341 + -0.5 895,341 + -1.4 895,341 + -1.0 895,341 + +0.5 895,341 + -0.7 895,341 + -1.3 895,341 + +0.0 895,341 + -0.7 895,342 - +0.0 895,342 - -0.2 895,342 - +0.5 895,342 - +1.1 895,342 - -0.8 895,342 - -1.7 895,342 - +0.8 895,342 - +0.0 895,342 - -0.8 895,342 - +2.0 895,342 - -0.2 895,342 - +0.2 895,342 - -2.3 895,342 - -1.8 895,342 - -0.6 895,342 - +0.2 895,342 - +0.5 895,342 - -0.3 895,392 - +1.5 895,393 - -0.6 895,393 - +0.1 895,393 - -1.0 895,428 + -0.8 895,428 + -1.9 895,428 + +0.2 895,428 + -0.4 895,428 + -0.5 895,429 - -0.5 895,429 - -1.4 895,581 + MPMX19_04523 0.12 -0.1 895,617 + MPMX19_04523 0.15 +0.2 895,617 + MPMX19_04523 0.15 +0.0 895,617 + MPMX19_04523 0.15 -0.7 895,617 + MPMX19_04523 0.15 +0.5 895,617 + MPMX19_04523 0.15 +0.6 895,618 - MPMX19_04523 0.15 +0.5 895,629 + MPMX19_04523 0.16 +0.8 895,629 + MPMX19_04523 0.16 -0.2 895,629 + MPMX19_04523 0.16 +1.3 895,630 - MPMX19_04523 0.16 +1.8 895,630 - MPMX19_04523 0.16 +1.5 895,630 - MPMX19_04523 0.16 -2.4 895,630 - MPMX19_04523 0.16 +1.9 895,630 - MPMX19_04523 0.16 +0.8
Or see this region's nucleotide sequence