Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04491 and MPMX19_04492 are separated by 233 nucleotides MPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides
MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075
_04491
MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551
_04492
MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780
_04493
Position (kb) 860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.460 kb on - strand, within MPMX19_04491 at 859.460 kb on - strand, within MPMX19_04491 at 859.711 kb on + strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.712 kb on - strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.199 kb on - strand at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.528 kb on + strand at 860.528 kb on + strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.611 kb on - strand at 860.611 kb on - strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.677 kb on - strand at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.435 kb on - strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 859,460 - MPMX19_04491 0.76 -1.0 859,460 - MPMX19_04491 0.76 -1.2 859,711 + MPMX19_04491 0.85 -0.2 859,712 - MPMX19_04491 0.86 -1.4 859,712 - MPMX19_04491 0.86 -1.4 859,712 - MPMX19_04491 0.86 -2.6 859,782 + MPMX19_04491 0.88 +0.4 859,782 + MPMX19_04491 0.88 +0.5 859,782 + MPMX19_04491 0.88 -1.7 859,783 - MPMX19_04491 0.88 +0.1 859,783 - MPMX19_04491 0.88 +0.5 859,783 - MPMX19_04491 0.88 -1.8 859,783 - MPMX19_04491 0.88 -1.5 859,903 + -1.0 859,903 + -1.9 859,903 + -0.2 859,903 + -0.0 859,903 + +0.7 859,903 + -1.3 859,903 + -1.4 859,904 - -1.2 859,904 - -0.5 859,904 - -0.5 859,904 - -2.0 859,904 - -0.6 859,904 - -0.8 859,904 - -0.1 859,915 + +0.2 859,915 + -0.5 859,915 + +0.0 859,915 + -0.9 859,915 + -1.3 859,916 - -1.3 859,916 - -1.7 859,916 - -1.0 859,916 - -0.8 859,916 - -0.5 859,916 - +0.3 860,196 + -0.5 860,196 + -1.8 860,196 + -3.0 860,196 + +0.0 860,196 + +0.4 860,197 - +0.5 860,197 - -0.4 860,197 - +0.1 860,197 - -1.2 860,197 - +1.0 860,197 - +0.0 860,198 + -0.5 860,198 + +0.7 860,198 + +0.1 860,199 - -0.2 860,349 + MPMX19_04492 0.16 -0.5 860,349 + MPMX19_04492 0.16 +0.1 860,349 + MPMX19_04492 0.16 +0.8 860,349 + MPMX19_04492 0.16 -1.9 860,349 + MPMX19_04492 0.16 -1.8 860,350 - MPMX19_04492 0.17 +2.0 860,350 - MPMX19_04492 0.17 -1.2 860,350 - MPMX19_04492 0.17 -1.5 860,528 + -0.7 860,528 + +0.9 860,529 - +0.3 860,529 - -1.3 860,529 - -0.8 860,558 + -1.8 860,558 + -1.2 860,558 + +0.5 860,558 + -0.0 860,610 + +0.4 860,610 + -0.5 860,610 + -0.8 860,610 + -0.1 860,610 + -0.7 860,610 + -0.3 860,610 + +1.5 860,611 - +1.8 860,611 - -0.6 860,676 + -0.8 860,676 + -0.9 860,676 + -0.5 860,677 - -0.6 861,097 + MPMX19_04493 0.33 -1.7 861,097 + MPMX19_04493 0.33 -0.5 861,097 + MPMX19_04493 0.33 -1.7 861,097 + MPMX19_04493 0.33 -0.5 861,097 + MPMX19_04493 0.33 -1.2 861,098 - MPMX19_04493 0.33 +0.7 861,098 - MPMX19_04493 0.33 -0.9 861,098 - MPMX19_04493 0.33 +0.4 861,434 + MPMX19_04493 0.66 -0.4 861,434 + MPMX19_04493 0.66 -1.5 861,434 + MPMX19_04493 0.66 +0.5 861,435 - MPMX19_04493 0.66 +0.6 861,526 + MPMX19_04493 0.75 -0.5 861,526 + MPMX19_04493 0.75 +1.1 861,526 + MPMX19_04493 0.75 +0.2 861,526 + MPMX19_04493 0.75 -0.1 861,526 + MPMX19_04493 0.75 -1.2 861,527 - MPMX19_04493 0.75 -0.8 861,527 - MPMX19_04493 0.75 +0.3 861,527 - MPMX19_04493 0.75 +0.4 861,527 - MPMX19_04493 0.75 +0.3 861,527 - MPMX19_04493 0.75 +0.1
Or see this region's nucleotide sequence