Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04386 and MPMX19_04387 are separated by 16 nucleotides MPMX19_04387 and MPMX19_04388 overlap by 4 nucleotides MPMX19_04388 and MPMX19_04389 are separated by 62 nucleotides MPMX19_04389 and MPMX19_04390 are separated by 151 nucleotides
MPMX19_04386: MPMX19_04386 - Cytosine deaminase, at 752,585 to 753,865
_04386
MPMX19_04387: MPMX19_04387 - hypothetical protein, at 753,882 to 754,127
_04387
MPMX19_04388: MPMX19_04388 - hypothetical protein, at 754,124 to 754,315
_04388
MPMX19_04389: MPMX19_04389 - Histidinol-phosphate aminotransferase, at 754,378 to 755,469
_04389
MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517
_04390
Position (kb)
754
755
756 Strain fitness (log2 ratio)
-2
-1
0
1 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.437 kb on + strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.438 kb on - strand, within MPMX19_04386 at 753.568 kb on + strand, within MPMX19_04386 at 753.568 kb on + strand, within MPMX19_04386 at 753.569 kb on - strand, within MPMX19_04386 at 753.569 kb on - strand, within MPMX19_04386 at 753.569 kb on - strand, within MPMX19_04386 at 753.669 kb on - strand, within MPMX19_04386 at 753.669 kb on - strand, within MPMX19_04386 at 753.705 kb on + strand, within MPMX19_04386 at 753.705 kb on + strand, within MPMX19_04386 at 753.705 kb on + strand, within MPMX19_04386 at 753.705 kb on + strand, within MPMX19_04386 at 753.706 kb on - strand, within MPMX19_04386 at 753.706 kb on - strand, within MPMX19_04386 at 753.706 kb on - strand, within MPMX19_04386 at 753.706 kb on - strand, within MPMX19_04386 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.006 kb on + strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.007 kb on - strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.082 kb on + strand, within MPMX19_04387 at 754.083 kb on - strand, within MPMX19_04387 at 754.083 kb on - strand, within MPMX19_04387 at 754.083 kb on - strand, within MPMX19_04387 at 754.083 kb on - strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.084 kb on + strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.085 kb on - strand, within MPMX19_04387 at 754.123 kb on + strand at 754.123 kb on + strand at 754.123 kb on + strand at 754.123 kb on + strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.124 kb on - strand at 754.136 kb on + strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.479 kb on - strand at 755.579 kb on + strand at 755.646 kb on + strand at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.213 kb on + strand, within MPMX19_04390 at 756.214 kb on - strand, within MPMX19_04390
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 753,437 + MPMX19_04386 0.67 -0.3 753,437 + MPMX19_04386 0.67 +0.2 753,437 + MPMX19_04386 0.67 -0.4 753,437 + MPMX19_04386 0.67 -1.2 753,437 + MPMX19_04386 0.67 +0.1 753,437 + MPMX19_04386 0.67 +0.6 753,437 + MPMX19_04386 0.67 -0.4 753,437 + MPMX19_04386 0.67 +0.2 753,437 + MPMX19_04386 0.67 +0.2 753,438 - MPMX19_04386 0.67 -1.2 753,438 - MPMX19_04386 0.67 +0.1 753,438 - MPMX19_04386 0.67 -0.9 753,438 - MPMX19_04386 0.67 -1.2 753,438 - MPMX19_04386 0.67 -0.2 753,438 - MPMX19_04386 0.67 +0.1 753,568 + MPMX19_04386 0.77 -0.2 753,568 + MPMX19_04386 0.77 -0.0 753,569 - MPMX19_04386 0.77 -0.4 753,569 - MPMX19_04386 0.77 -0.2 753,569 - MPMX19_04386 0.77 -0.9 753,669 - MPMX19_04386 0.85 +1.5 753,669 - MPMX19_04386 0.85 -0.2 753,705 + MPMX19_04386 0.87 -0.4 753,705 + MPMX19_04386 0.87 +0.6 753,705 + MPMX19_04386 0.87 -0.7 753,705 + MPMX19_04386 0.87 -0.1 753,706 - MPMX19_04386 0.88 -1.0 753,706 - MPMX19_04386 0.88 -0.7 753,706 - MPMX19_04386 0.88 +1.0 753,706 - MPMX19_04386 0.88 +0.7 754,006 + MPMX19_04387 0.50 -0.2 754,006 + MPMX19_04387 0.50 +1.1 754,006 + MPMX19_04387 0.50 -2.5 754,006 + MPMX19_04387 0.50 +0.2 754,006 + MPMX19_04387 0.50 +0.4 754,006 + MPMX19_04387 0.50 -0.0 754,006 + MPMX19_04387 0.50 -0.1 754,007 - MPMX19_04387 0.51 -0.5 754,007 - MPMX19_04387 0.51 -0.8 754,007 - MPMX19_04387 0.51 +0.7 754,007 - MPMX19_04387 0.51 +0.1 754,007 - MPMX19_04387 0.51 +0.2 754,007 - MPMX19_04387 0.51 -1.7 754,007 - MPMX19_04387 0.51 -1.3 754,007 - MPMX19_04387 0.51 -1.3 754,007 - MPMX19_04387 0.51 -2.2 754,007 - MPMX19_04387 0.51 -0.7 754,007 - MPMX19_04387 0.51 -1.4 754,007 - MPMX19_04387 0.51 +0.2 754,082 + MPMX19_04387 0.81 -0.2 754,082 + MPMX19_04387 0.81 +0.2 754,082 + MPMX19_04387 0.81 -1.0 754,082 + MPMX19_04387 0.81 -0.6 754,082 + MPMX19_04387 0.81 +0.2 754,082 + MPMX19_04387 0.81 -1.7 754,082 + MPMX19_04387 0.81 +0.1 754,082 + MPMX19_04387 0.81 +0.2 754,083 - MPMX19_04387 0.82 +0.1 754,083 - MPMX19_04387 0.82 -0.5 754,083 - MPMX19_04387 0.82 -1.7 754,083 - MPMX19_04387 0.82 +0.1 754,084 + MPMX19_04387 0.82 -0.4 754,084 + MPMX19_04387 0.82 -0.6 754,084 + MPMX19_04387 0.82 -0.0 754,084 + MPMX19_04387 0.82 +0.6 754,084 + MPMX19_04387 0.82 -0.4 754,084 + MPMX19_04387 0.82 +0.2 754,084 + MPMX19_04387 0.82 +0.1 754,084 + MPMX19_04387 0.82 -1.5 754,084 + MPMX19_04387 0.82 -0.6 754,084 + MPMX19_04387 0.82 +0.7 754,084 + MPMX19_04387 0.82 -1.2 754,084 + MPMX19_04387 0.82 -1.4 754,084 + MPMX19_04387 0.82 -0.7 754,084 + MPMX19_04387 0.82 -1.7 754,084 + MPMX19_04387 0.82 +0.5 754,084 + MPMX19_04387 0.82 -0.5 754,084 + MPMX19_04387 0.82 -0.7 754,084 + MPMX19_04387 0.82 -0.2 754,084 + MPMX19_04387 0.82 +1.4 754,085 - MPMX19_04387 0.83 -0.8 754,085 - MPMX19_04387 0.83 -0.1 754,085 - MPMX19_04387 0.83 -0.1 754,085 - MPMX19_04387 0.83 -1.1 754,085 - MPMX19_04387 0.83 -0.6 754,085 - MPMX19_04387 0.83 +0.6 754,085 - MPMX19_04387 0.83 -1.7 754,085 - MPMX19_04387 0.83 -1.1 754,085 - MPMX19_04387 0.83 -0.3 754,085 - MPMX19_04387 0.83 -1.9 754,085 - MPMX19_04387 0.83 -0.8 754,085 - MPMX19_04387 0.83 +0.0 754,085 - MPMX19_04387 0.83 -0.1 754,085 - MPMX19_04387 0.83 -1.7 754,085 - MPMX19_04387 0.83 -0.5 754,085 - MPMX19_04387 0.83 -1.2 754,085 - MPMX19_04387 0.83 +0.4 754,085 - MPMX19_04387 0.83 +0.1 754,085 - MPMX19_04387 0.83 +0.7 754,085 - MPMX19_04387 0.83 -0.5 754,085 - MPMX19_04387 0.83 -0.4 754,085 - MPMX19_04387 0.83 -0.5 754,085 - MPMX19_04387 0.83 -1.2 754,085 - MPMX19_04387 0.83 -1.2 754,085 - MPMX19_04387 0.83 -0.7 754,123 + -1.8 754,123 + -0.2 754,123 + -0.4 754,123 + -2.0 754,124 - -0.5 754,124 - -0.3 754,124 - -0.5 754,124 - -0.3 754,124 - -0.4 754,124 - -1.0 754,124 - -0.6 754,124 - -0.5 754,124 - -0.2 754,124 - -0.8 754,124 - -0.3 754,124 - -0.8 754,124 - -0.3 754,124 - -1.0 754,136 + -0.5 755,479 - +1.1 755,479 - -0.5 755,479 - -0.7 755,479 - -0.9 755,479 - -1.0 755,479 - +0.4 755,479 - -1.2 755,479 - -0.0 755,579 + +1.1 755,646 + +0.1 756,213 + MPMX19_04390 0.66 -0.5 756,213 + MPMX19_04390 0.66 -0.2 756,213 + MPMX19_04390 0.66 +0.8 756,213 + MPMX19_04390 0.66 +0.4 756,214 - MPMX19_04390 0.66 -0.2
Or see this region's nucleotide sequence