Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04326

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04324 and MPMX19_04325 are separated by 11 nucleotidesMPMX19_04325 and MPMX19_04326 are separated by 16 nucleotidesMPMX19_04326 and MPMX19_04327 are separated by 34 nucleotides MPMX19_04324: MPMX19_04324 - Segregation and condensation protein A, at 688,242 to 689,072 _04324 MPMX19_04325: MPMX19_04325 - hypothetical protein, at 689,084 to 689,761 _04325 MPMX19_04326: MPMX19_04326 - Beta-hexosaminidase, at 689,778 to 690,818 _04326 MPMX19_04327: MPMX19_04327 - hypothetical protein, at 690,853 to 691,923 _04327 Position (kb) 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 688.810 kb on + strand, within MPMX19_04324at 688.810 kb on + strand, within MPMX19_04324at 688.811 kb on - strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.892 kb on - strand, within MPMX19_04324at 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.392 kb on + strand, within MPMX19_04325at 689.393 kb on - strand, within MPMX19_04325at 689.393 kb on - strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.846 kb on - strandat 690.846 kb on - strandat 690.846 kb on - strandat 690.846 kb on - strandat 690.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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688,810 + MPMX19_04324 0.68 +1.5
688,810 + MPMX19_04324 0.68 -0.8
688,811 - MPMX19_04324 0.68 +1.0
688,837 + MPMX19_04324 0.72 +1.0
688,837 + MPMX19_04324 0.72 -1.4
688,837 + MPMX19_04324 0.72 +0.2
688,837 + MPMX19_04324 0.72 +0.5
688,838 - MPMX19_04324 0.72 -0.9
688,838 - MPMX19_04324 0.72 +0.6
688,838 - MPMX19_04324 0.72 -0.6
688,838 - MPMX19_04324 0.72 -0.5
688,838 - MPMX19_04324 0.72 +0.2
688,891 + MPMX19_04324 0.78 -1.4
688,891 + MPMX19_04324 0.78 -0.0
688,891 + MPMX19_04324 0.78 -0.3
688,892 - MPMX19_04324 0.78 +0.6
689,082 + -0.6
689,082 + -1.9
689,082 + -0.4
689,082 + -0.0
689,082 + +0.9
689,082 + +0.8
689,082 + +0.4
689,083 - -0.8
689,083 - +0.2
689,392 + MPMX19_04325 0.45 +0.2
689,393 - MPMX19_04325 0.46 -0.8
689,393 - MPMX19_04325 0.46 -0.8
689,394 + MPMX19_04325 0.46 -1.5
689,394 + MPMX19_04325 0.46 -2.4
689,394 + MPMX19_04325 0.46 +0.2
689,394 + MPMX19_04325 0.46 +0.8
689,394 + MPMX19_04325 0.46 -0.3
689,394 + MPMX19_04325 0.46 -0.9
689,394 + MPMX19_04325 0.46 +1.1
689,394 + MPMX19_04325 0.46 -0.8
689,394 + MPMX19_04325 0.46 +0.2
689,394 + MPMX19_04325 0.46 -0.4
689,394 + MPMX19_04325 0.46 +1.0
689,394 + MPMX19_04325 0.46 +0.1
689,394 + MPMX19_04325 0.46 +0.4
689,395 - MPMX19_04325 0.46 -0.3
689,395 - MPMX19_04325 0.46 +0.1
689,395 - MPMX19_04325 0.46 -0.5
689,395 - MPMX19_04325 0.46 -1.8
689,395 - MPMX19_04325 0.46 -0.7
689,395 - MPMX19_04325 0.46 +0.1
689,395 - MPMX19_04325 0.46 -1.7
689,395 - MPMX19_04325 0.46 -0.8
689,568 + MPMX19_04325 0.71 +0.2
689,568 + MPMX19_04325 0.71 +1.8
689,568 + MPMX19_04325 0.71 -0.8
689,568 + MPMX19_04325 0.71 -1.0
689,568 + MPMX19_04325 0.71 -1.1
689,569 - MPMX19_04325 0.72 +0.1
689,569 - MPMX19_04325 0.72 -1.1
689,569 - MPMX19_04325 0.72 +0.8
689,569 - MPMX19_04325 0.72 -1.1
689,569 - MPMX19_04325 0.72 -0.0
689,569 - MPMX19_04325 0.72 +1.2
689,569 - MPMX19_04325 0.72 -2.0
689,569 - MPMX19_04325 0.72 -1.7
690,465 - MPMX19_04326 0.66 -0.8
690,465 - MPMX19_04326 0.66 -0.0
690,465 - MPMX19_04326 0.66 +0.2
690,465 - MPMX19_04326 0.66 -1.4
690,465 - MPMX19_04326 0.66 -0.9
690,465 - MPMX19_04326 0.66 -0.4
690,465 - MPMX19_04326 0.66 -1.0
690,465 - MPMX19_04326 0.66 +0.5
690,465 - MPMX19_04326 0.66 -1.4
690,465 - MPMX19_04326 0.66 -0.0
690,465 - MPMX19_04326 0.66 +0.1
690,465 - MPMX19_04326 0.66 -0.1
690,465 - MPMX19_04326 0.66 -0.1
690,465 - MPMX19_04326 0.66 -1.5
690,465 - MPMX19_04326 0.66 +0.2
690,465 - MPMX19_04326 0.66 -1.7
690,465 - MPMX19_04326 0.66 -0.9
690,846 - -2.3
690,846 - -1.0
690,846 - -3.0
690,846 - -1.4
690,846 - +0.2

Or see this region's nucleotide sequence