Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04206

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04204 and MPMX19_04205 overlap by 4 nucleotidesMPMX19_04205 and MPMX19_04206 are separated by 39 nucleotidesMPMX19_04206 and MPMX19_04207 are separated by 200 nucleotides MPMX19_04204: MPMX19_04204 - D-alanine--D-alanyl carrier protein ligase, at 537,170 to 538,339 _04204 MPMX19_04205: MPMX19_04205 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 538,336 to 539,112 _04205 MPMX19_04206: MPMX19_04206 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 539,152 to 540,210 _04206 MPMX19_04207: MPMX19_04207 - hypothetical protein, at 540,411 to 542,273 _04207 Position (kb) 539 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 538.291 kb on + strandat 538.292 kb on - strandat 538.813 kb on + strand, within MPMX19_04205at 538.813 kb on + strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.814 kb on - strand, within MPMX19_04205at 538.831 kb on + strand, within MPMX19_04205at 538.832 kb on - strand, within MPMX19_04205at 538.832 kb on - strand, within MPMX19_04205at 538.927 kb on + strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 538.928 kb on - strand, within MPMX19_04205at 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.085 kb on + strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.086 kb on - strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.103 kb on + strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.104 kb on - strandat 539.524 kb on + strand, within MPMX19_04206at 539.524 kb on + strand, within MPMX19_04206at 539.524 kb on + strand, within MPMX19_04206at 539.524 kb on + strand, within MPMX19_04206at 539.525 kb on - strand, within MPMX19_04206at 539.525 kb on - strand, within MPMX19_04206at 539.734 kb on + strand, within MPMX19_04206at 539.734 kb on + strand, within MPMX19_04206at 539.734 kb on + strand, within MPMX19_04206at 539.734 kb on + strand, within MPMX19_04206at 539.734 kb on + strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.735 kb on - strand, within MPMX19_04206at 539.822 kb on + strand, within MPMX19_04206at 539.822 kb on + strand, within MPMX19_04206at 539.823 kb on - strand, within MPMX19_04206at 539.823 kb on - strand, within MPMX19_04206at 540.275 kb on + strandat 540.275 kb on + strandat 540.275 kb on + strandat 540.276 kb on - strandat 540.276 kb on - strandat 540.338 kb on + strandat 540.338 kb on + strandat 540.338 kb on + strandat 540.339 kb on - strandat 540.339 kb on - strandat 540.339 kb on - strandat 540.339 kb on - strandat 540.339 kb on - strandat 540.407 kb on + strandat 540.407 kb on + strandat 540.407 kb on + strandat 540.408 kb on - strandat 540.408 kb on - strandat 540.408 kb on - strandat 540.426 kb on - strandat 540.816 kb on + strand, within MPMX19_04207at 540.817 kb on - strand, within MPMX19_04207at 540.817 kb on - strand, within MPMX19_04207at 540.817 kb on - strand, within MPMX19_04207at 540.946 kb on - strand, within MPMX19_04207at 540.946 kb on - strand, within MPMX19_04207at 540.946 kb on - strand, within MPMX19_04207at 541.161 kb on + strand, within MPMX19_04207at 541.161 kb on + strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207at 541.162 kb on - strand, within MPMX19_04207

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
538,291 + -1.2
538,292 - +0.6
538,813 + MPMX19_04205 0.61 -0.8
538,813 + MPMX19_04205 0.61 -0.1
538,814 - MPMX19_04205 0.62 -0.5
538,814 - MPMX19_04205 0.62 -1.4
538,814 - MPMX19_04205 0.62 -0.5
538,814 - MPMX19_04205 0.62 -1.2
538,831 + MPMX19_04205 0.64 -0.2
538,832 - MPMX19_04205 0.64 -1.8
538,832 - MPMX19_04205 0.64 +0.4
538,927 + MPMX19_04205 0.76 -1.7
538,928 - MPMX19_04205 0.76 -1.3
538,928 - MPMX19_04205 0.76 +1.0
538,928 - MPMX19_04205 0.76 -1.9
539,085 + -1.0
539,085 + -0.8
539,085 + -1.0
539,085 + +1.2
539,085 + -1.5
539,085 + -3.8
539,085 + -0.4
539,085 + -0.2
539,085 + -0.4
539,085 + -0.2
539,085 + -0.2
539,085 + -2.2
539,086 - +0.8
539,086 - +0.7
539,086 - -0.4
539,086 - -0.5
539,086 - -0.4
539,086 - -0.2
539,086 - -0.8
539,086 - -2.4
539,086 - -0.5
539,086 - -0.0
539,086 - -0.6
539,086 - -0.1
539,086 - +1.0
539,103 + -1.3
539,103 + -0.5
539,103 + -0.8
539,103 + -0.5
539,103 + -0.5
539,103 + +0.8
539,103 + -3.4
539,104 - -0.8
539,104 - -1.7
539,104 - -0.9
539,104 - -2.1
539,104 - -1.0
539,104 - -0.5
539,524 + MPMX19_04206 0.35 -0.6
539,524 + MPMX19_04206 0.35 -0.2
539,524 + MPMX19_04206 0.35 -1.8
539,524 + MPMX19_04206 0.35 +0.8
539,525 - MPMX19_04206 0.35 -2.1
539,525 - MPMX19_04206 0.35 +0.2
539,734 + MPMX19_04206 0.55 -1.0
539,734 + MPMX19_04206 0.55 +0.4
539,734 + MPMX19_04206 0.55 -0.4
539,734 + MPMX19_04206 0.55 -0.6
539,734 + MPMX19_04206 0.55 -2.1
539,735 - MPMX19_04206 0.55 +0.3
539,735 - MPMX19_04206 0.55 -2.8
539,735 - MPMX19_04206 0.55 -0.8
539,735 - MPMX19_04206 0.55 -0.8
539,735 - MPMX19_04206 0.55 +0.7
539,735 - MPMX19_04206 0.55 -0.1
539,735 - MPMX19_04206 0.55 +0.1
539,735 - MPMX19_04206 0.55 -1.0
539,735 - MPMX19_04206 0.55 -0.8
539,735 - MPMX19_04206 0.55 -1.5
539,735 - MPMX19_04206 0.55 -1.8
539,735 - MPMX19_04206 0.55 +0.2
539,822 + MPMX19_04206 0.63 -1.3
539,822 + MPMX19_04206 0.63 -1.7
539,823 - MPMX19_04206 0.63 -0.5
539,823 - MPMX19_04206 0.63 -2.2
540,275 + -2.3
540,275 + +0.3
540,275 + +0.2
540,276 - +0.1
540,276 - -2.5
540,338 + -0.7
540,338 + -1.2
540,338 + -0.0
540,339 - +1.8
540,339 - -2.3
540,339 - -0.2
540,339 - -0.9
540,339 - -0.7
540,407 + -1.8
540,407 + -0.6
540,407 + +0.0
540,408 - -0.5
540,408 - -0.0
540,408 - +0.4
540,426 - -2.6
540,816 + MPMX19_04207 0.22 -1.7
540,817 - MPMX19_04207 0.22 -0.5
540,817 - MPMX19_04207 0.22 +1.8
540,817 - MPMX19_04207 0.22 -2.3
540,946 - MPMX19_04207 0.29 +1.8
540,946 - MPMX19_04207 0.29 +0.5
540,946 - MPMX19_04207 0.29 +0.1
541,161 + MPMX19_04207 0.40 -0.0
541,161 + MPMX19_04207 0.40 -0.5
541,162 - MPMX19_04207 0.40 -0.8
541,162 - MPMX19_04207 0.40 -0.4
541,162 - MPMX19_04207 0.40 -1.4
541,162 - MPMX19_04207 0.40 -0.9
541,162 - MPMX19_04207 0.40 -1.0
541,162 - MPMX19_04207 0.40 -0.9

Or see this region's nucleotide sequence