Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04112

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04110 and MPMX19_04111 are separated by 271 nucleotidesMPMX19_04111 and MPMX19_04112 overlap by 4 nucleotidesMPMX19_04112 and MPMX19_04113 overlap by 1 nucleotidesMPMX19_04113 and MPMX19_04114 are separated by 48 nucleotides MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042 _04110 MPMX19_04111: MPMX19_04111 - hypothetical protein, at 418,314 to 418,877 _04111 MPMX19_04112: MPMX19_04112 - hypothetical protein, at 418,874 to 420,349 _04112 MPMX19_04113: MPMX19_04113 - hypothetical protein, at 420,349 to 421,029 _04113 MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766 _04114 Position (kb) 418 419 420 421Strain fitness (log2 ratio) -2 -1 0 1at 418.132 kb on + strandat 418.132 kb on + strandat 418.133 kb on - strandat 418.133 kb on - strandat 418.209 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.551 kb on + strand, within MPMX19_04111at 418.551 kb on + strand, within MPMX19_04111at 418.970 kb on + strandat 419.144 kb on + strand, within MPMX19_04112at 419.261 kb on + strand, within MPMX19_04112at 419.261 kb on + strand, within MPMX19_04112at 419.262 kb on - strand, within MPMX19_04112at 419.526 kb on - strand, within MPMX19_04112at 419.579 kb on + strand, within MPMX19_04112at 419.580 kb on - strand, within MPMX19_04112at 420.068 kb on + strand, within MPMX19_04112at 420.137 kb on + strand, within MPMX19_04112at 420.168 kb on - strand, within MPMX19_04112at 420.185 kb on + strand, within MPMX19_04112at 420.185 kb on + strand, within MPMX19_04112at 420.185 kb on + strand, within MPMX19_04112at 421.048 kb on + strandat 421.048 kb on + strandat 421.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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418,132 + +0.2
418,132 + -0.7
418,133 - -1.7
418,133 - -1.2
418,209 + -0.2
418,295 + -1.9
418,295 + -0.9
418,295 + -1.0
418,295 + -1.0
418,295 + -0.6
418,295 + -0.3
418,295 + -1.0
418,295 + -1.0
418,295 + -0.8
418,295 + -0.4
418,295 + +1.3
418,295 + -0.7
418,295 + -1.5
418,551 + MPMX19_04111 0.42 +0.1
418,551 + MPMX19_04111 0.42 -2.0
418,970 + +0.8
419,144 + MPMX19_04112 0.18 -0.9
419,261 + MPMX19_04112 0.26 -1.5
419,261 + MPMX19_04112 0.26 -2.0
419,262 - MPMX19_04112 0.26 -0.3
419,526 - MPMX19_04112 0.44 -0.6
419,579 + MPMX19_04112 0.48 -0.5
419,580 - MPMX19_04112 0.48 +0.0
420,068 + MPMX19_04112 0.81 -1.0
420,137 + MPMX19_04112 0.86 -1.2
420,168 - MPMX19_04112 0.88 -0.3
420,185 + MPMX19_04112 0.89 -1.8
420,185 + MPMX19_04112 0.89 -0.9
420,185 + MPMX19_04112 0.89 -0.6
421,048 + +0.6
421,048 + -0.5
421,227 + -0.1

Or see this region's nucleotide sequence