Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04101 and MPMX19_04102 are separated by 174 nucleotides MPMX19_04102 and MPMX19_04103 are separated by 80 nucleotides MPMX19_04103 and MPMX19_04104 are separated by 198 nucleotides
MPMX19_04101: MPMX19_04101 - hypothetical protein, at 407,261 to 408,565
_04101
MPMX19_04102: MPMX19_04102 - hypothetical protein, at 408,740 to 409,972
_04102
MPMX19_04103: MPMX19_04103 - hypothetical protein, at 410,053 to 410,313
_04103
MPMX19_04104: MPMX19_04104 - hypothetical protein, at 410,512 to 411,090
_04104
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.997 kb on - strand, within MPMX19_04101 at 407.997 kb on - strand, within MPMX19_04101 at 408.209 kb on + strand, within MPMX19_04101 at 408.209 kb on + strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.210 kb on - strand, within MPMX19_04101 at 408.587 kb on + strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.588 kb on - strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.595 kb on + strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.596 kb on - strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.620 kb on + strand at 408.621 kb on - strand at 408.621 kb on - strand at 408.621 kb on - strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.649 kb on + strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.650 kb on - strand at 408.869 kb on + strand, within MPMX19_04102 at 408.869 kb on + strand, within MPMX19_04102 at 408.870 kb on - strand, within MPMX19_04102 at 408.870 kb on - strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.011 kb on + strand, within MPMX19_04102 at 409.012 kb on - strand, within MPMX19_04102 at 409.012 kb on - strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.091 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.457 kb on + strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.458 kb on - strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.611 kb on + strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.612 kb on - strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.715 kb on + strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.716 kb on - strand, within MPMX19_04102 at 409.793 kb on + strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.794 kb on - strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.824 kb on + strand, within MPMX19_04102 at 409.825 kb on - strand, within MPMX19_04102 at 409.825 kb on - strand, within MPMX19_04102 at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.907 kb on + strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.908 kb on - strand at 409.971 kb on - strand at 410.367 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.423 kb on + strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.424 kb on - strand at 410.493 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.511 kb on + strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.512 kb on - strand at 410.581 kb on + strand, within MPMX19_04104 at 410.581 kb on + strand, within MPMX19_04104 at 410.582 kb on - strand, within MPMX19_04104 at 410.582 kb on - strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.596 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.639 kb on + strand, within MPMX19_04104 at 410.692 kb on + strand, within MPMX19_04104 at 410.767 kb on + strand, within MPMX19_04104 at 410.767 kb on + strand, within MPMX19_04104
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 407,997 - MPMX19_04101 0.56 +0.2 407,997 - MPMX19_04101 0.56 +0.7 408,209 + MPMX19_04101 0.73 -0.8 408,209 + MPMX19_04101 0.73 -0.9 408,210 - MPMX19_04101 0.73 +0.2 408,210 - MPMX19_04101 0.73 -0.4 408,210 - MPMX19_04101 0.73 -0.7 408,210 - MPMX19_04101 0.73 -0.3 408,587 + -1.4 408,588 - -0.3 408,588 - +0.2 408,588 - +0.8 408,595 + -1.4 408,595 + -1.0 408,595 + +0.8 408,595 + -0.1 408,596 - -0.2 408,596 - -0.5 408,596 - -0.8 408,596 - -0.8 408,620 + -1.0 408,620 + -0.2 408,620 + +0.0 408,620 + -0.1 408,620 + +0.2 408,620 + -0.7 408,621 - -1.0 408,621 - +0.2 408,621 - -0.0 408,649 + +0.5 408,649 + +1.0 408,649 + -0.6 408,649 + -0.8 408,649 + -0.3 408,649 + -1.8 408,650 - -0.9 408,650 - -0.7 408,650 - -0.9 408,650 - -0.9 408,650 - -0.5 408,650 - -1.7 408,650 - -1.2 408,869 + MPMX19_04102 0.10 -1.7 408,869 + MPMX19_04102 0.10 +0.0 408,870 - MPMX19_04102 0.11 -1.7 408,870 - MPMX19_04102 0.11 -0.5 409,011 + MPMX19_04102 0.22 +0.0 409,011 + MPMX19_04102 0.22 -1.8 409,011 + MPMX19_04102 0.22 -1.0 409,011 + MPMX19_04102 0.22 +1.8 409,012 - MPMX19_04102 0.22 +1.0 409,012 - MPMX19_04102 0.22 -0.2 409,091 + MPMX19_04102 0.28 -0.1 409,091 + MPMX19_04102 0.28 -1.0 409,091 + MPMX19_04102 0.28 +0.2 409,091 + MPMX19_04102 0.28 -0.8 409,457 + MPMX19_04102 0.58 -0.3 409,457 + MPMX19_04102 0.58 -0.6 409,457 + MPMX19_04102 0.58 -0.0 409,457 + MPMX19_04102 0.58 -0.3 409,457 + MPMX19_04102 0.58 -0.4 409,457 + MPMX19_04102 0.58 -1.7 409,457 + MPMX19_04102 0.58 -1.5 409,457 + MPMX19_04102 0.58 +0.6 409,457 + MPMX19_04102 0.58 -1.0 409,458 - MPMX19_04102 0.58 +0.6 409,458 - MPMX19_04102 0.58 -0.2 409,458 - MPMX19_04102 0.58 -0.5 409,458 - MPMX19_04102 0.58 +0.5 409,458 - MPMX19_04102 0.58 +0.3 409,458 - MPMX19_04102 0.58 -0.5 409,458 - MPMX19_04102 0.58 -2.9 409,458 - MPMX19_04102 0.58 +0.2 409,611 + MPMX19_04102 0.71 -1.4 409,611 + MPMX19_04102 0.71 -0.3 409,611 + MPMX19_04102 0.71 +0.7 409,611 + MPMX19_04102 0.71 -0.1 409,612 - MPMX19_04102 0.71 -0.4 409,612 - MPMX19_04102 0.71 +0.6 409,612 - MPMX19_04102 0.71 -0.5 409,612 - MPMX19_04102 0.71 +1.0 409,715 + MPMX19_04102 0.79 -0.6 409,715 + MPMX19_04102 0.79 +0.2 409,715 + MPMX19_04102 0.79 +0.2 409,715 + MPMX19_04102 0.79 +0.0 409,716 - MPMX19_04102 0.79 -0.5 409,716 - MPMX19_04102 0.79 -1.7 409,716 - MPMX19_04102 0.79 -0.8 409,716 - MPMX19_04102 0.79 -0.2 409,716 - MPMX19_04102 0.79 +0.6 409,716 - MPMX19_04102 0.79 -1.0 409,716 - MPMX19_04102 0.79 +0.1 409,716 - MPMX19_04102 0.79 -1.3 409,716 - MPMX19_04102 0.79 -0.5 409,716 - MPMX19_04102 0.79 +0.3 409,716 - MPMX19_04102 0.79 -1.3 409,793 + MPMX19_04102 0.85 +1.4 409,794 - MPMX19_04102 0.85 -1.7 409,794 - MPMX19_04102 0.85 -0.2 409,794 - MPMX19_04102 0.85 -0.7 409,794 - MPMX19_04102 0.85 -0.7 409,794 - MPMX19_04102 0.85 -1.0 409,824 + MPMX19_04102 0.88 +1.6 409,824 + MPMX19_04102 0.88 -0.3 409,824 + MPMX19_04102 0.88 -0.8 409,824 + MPMX19_04102 0.88 +0.2 409,824 + MPMX19_04102 0.88 -0.2 409,825 - MPMX19_04102 0.88 -3.3 409,825 - MPMX19_04102 0.88 -0.3 409,907 + -1.0 409,907 + +0.1 409,907 + -1.2 409,907 + +0.5 409,907 + -0.5 409,908 - -0.0 409,908 - +2.3 409,908 - +0.0 409,908 - +0.4 409,971 - +0.0 410,367 + -0.6 410,423 + +0.0 410,423 + -0.8 410,423 + +0.8 410,423 + +0.2 410,423 + -0.5 410,423 + +0.9 410,423 + -0.7 410,423 + -0.0 410,423 + -0.1 410,423 + +1.0 410,423 + +2.4 410,423 + -1.5 410,423 + -0.5 410,423 + -1.2 410,423 + -1.5 410,423 + +1.2 410,423 + -0.1 410,423 + -1.5 410,423 + +0.7 410,423 + -1.0 410,423 + +0.1 410,423 + -1.5 410,423 + -2.5 410,423 + -1.2 410,423 + -0.5 410,423 + +0.6 410,423 + -1.9 410,424 - -1.3 410,424 - +0.2 410,424 - +1.0 410,424 - +0.2 410,424 - +1.3 410,424 - +0.9 410,424 - -1.9 410,424 - -1.9 410,424 - -1.4 410,424 - -1.0 410,424 - -0.8 410,424 - -0.1 410,424 - -0.8 410,424 - -0.2 410,424 - -0.9 410,424 - +0.4 410,424 - -0.8 410,424 - +0.5 410,424 - +0.6 410,424 - +0.3 410,424 - -0.5 410,424 - -0.2 410,493 + -2.5 410,511 + +1.4 410,511 + -1.2 410,511 + +0.0 410,511 + +0.9 410,511 + +0.9 410,511 + -0.9 410,511 + +0.5 410,511 + +0.3 410,511 + +0.0 410,511 + -1.1 410,511 + +0.1 410,512 - -0.5 410,512 - -2.0 410,512 - -0.4 410,512 - -1.3 410,512 - -0.5 410,512 - -0.2 410,512 - -1.0 410,512 - +0.5 410,512 - +0.2 410,581 + MPMX19_04104 0.12 -0.2 410,581 + MPMX19_04104 0.12 +0.4 410,582 - MPMX19_04104 0.12 -0.1 410,582 - MPMX19_04104 0.12 -0.8 410,596 + MPMX19_04104 0.15 -0.7 410,596 + MPMX19_04104 0.15 -0.8 410,596 + MPMX19_04104 0.15 -2.9 410,596 + MPMX19_04104 0.15 -0.3 410,596 + MPMX19_04104 0.15 -0.6 410,639 + MPMX19_04104 0.22 -1.5 410,639 + MPMX19_04104 0.22 -0.1 410,639 + MPMX19_04104 0.22 -0.2 410,639 + MPMX19_04104 0.22 -2.1 410,639 + MPMX19_04104 0.22 +0.2 410,639 + MPMX19_04104 0.22 -0.7 410,639 + MPMX19_04104 0.22 -1.1 410,639 + MPMX19_04104 0.22 -0.5 410,639 + MPMX19_04104 0.22 -0.1 410,639 + MPMX19_04104 0.22 +0.5 410,639 + MPMX19_04104 0.22 +0.4 410,639 + MPMX19_04104 0.22 -1.8 410,639 + MPMX19_04104 0.22 -1.7 410,639 + MPMX19_04104 0.22 +0.2 410,639 + MPMX19_04104 0.22 -0.9 410,639 + MPMX19_04104 0.22 -1.0 410,639 + MPMX19_04104 0.22 -0.2 410,639 + MPMX19_04104 0.22 +0.2 410,639 + MPMX19_04104 0.22 -0.5 410,639 + MPMX19_04104 0.22 +0.4 410,639 + MPMX19_04104 0.22 -1.7 410,639 + MPMX19_04104 0.22 -0.7 410,639 + MPMX19_04104 0.22 -0.5 410,639 + MPMX19_04104 0.22 +0.2 410,692 + MPMX19_04104 0.31 -1.0 410,767 + MPMX19_04104 0.44 +0.1 410,767 + MPMX19_04104 0.44 -1.8
Or see this region's nucleotide sequence