Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04092

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04090 and MPMX19_04091 are separated by 4 nucleotidesMPMX19_04091 and MPMX19_04092 overlap by 1 nucleotidesMPMX19_04092 and MPMX19_04093 are separated by 34 nucleotidesMPMX19_04093 and MPMX19_04094 are separated by 62 nucleotides MPMX19_04090: MPMX19_04090 - Anaerobic nitric oxide reductase transcription regulator NorR, at 394,817 to 396,373 _04090 MPMX19_04091: MPMX19_04091 - Chemotaxis protein PomA, at 396,378 to 397,316 _04091 MPMX19_04092: MPMX19_04092 - Flagellar motor switch protein FliN, at 397,316 to 397,633 _04092 MPMX19_04093: MPMX19_04093 - hypothetical protein, at 397,668 to 398,444 _04093 MPMX19_04094: MPMX19_04094 - Flagellar M-ring protein, at 398,507 to 400,168 _04094 Position (kb) 397 398Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.339 kb on + strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.340 kb on - strandat 396.373 kb on + strandat 396.373 kb on + strandat 396.374 kb on - strandat 396.374 kb on - strandat 396.374 kb on - strandat 396.374 kb on - strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.379 kb on + strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.380 kb on - strandat 396.412 kb on + strandat 396.412 kb on + strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.413 kb on - strandat 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.506 kb on + strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.507 kb on - strand, within MPMX19_04091at 396.508 kb on + strand, within MPMX19_04091at 396.508 kb on + strand, within MPMX19_04091at 396.509 kb on - strand, within MPMX19_04091at 396.509 kb on - strand, within MPMX19_04091at 396.598 kb on + strand, within MPMX19_04091at 396.598 kb on + strand, within MPMX19_04091at 396.598 kb on + strand, within MPMX19_04091at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.578 kb on + strand, within MPMX19_04092at 397.578 kb on + strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.669 kb on + strandat 397.669 kb on + strandat 397.670 kb on - strandat 397.670 kb on - strandat 398.155 kb on + strand, within MPMX19_04093at 398.156 kb on - strand, within MPMX19_04093at 398.156 kb on - strand, within MPMX19_04093at 398.203 kb on + strand, within MPMX19_04093at 398.204 kb on - strand, within MPMX19_04093at 398.251 kb on + strand, within MPMX19_04093at 398.251 kb on + strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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396,339 + +1.1
396,339 + -0.8
396,339 + +0.1
396,339 + +0.1
396,339 + -1.1
396,339 + -0.8
396,339 + +0.5
396,339 + +0.2
396,339 + -1.4
396,339 + -0.2
396,340 - -0.2
396,340 - +0.3
396,340 - +0.4
396,340 - -1.7
396,340 - +1.1
396,340 - -0.2
396,340 - +0.7
396,340 - -0.1
396,340 - -0.5
396,340 - -1.5
396,340 - +0.6
396,340 - -1.3
396,340 - -0.0
396,340 - +0.4
396,373 + -2.1
396,373 + +0.4
396,374 - -1.8
396,374 - -1.3
396,374 - -1.3
396,374 - -1.2
396,379 + -1.9
396,379 + -0.9
396,379 + -0.9
396,379 + +0.1
396,379 + -1.7
396,379 + -0.6
396,379 + -0.4
396,379 + -0.6
396,379 + +1.8
396,379 + -0.4
396,379 + -1.5
396,379 + -1.2
396,379 + +0.2
396,379 + +0.3
396,379 + +0.2
396,379 + -1.1
396,379 + +0.3
396,379 + -1.0
396,379 + -1.7
396,379 + +0.2
396,379 + -1.8
396,379 + -0.8
396,379 + -2.3
396,379 + -0.8
396,380 - -0.0
396,380 - -0.9
396,380 - +0.3
396,380 - -0.1
396,380 - -0.2
396,380 - +0.4
396,380 - +0.2
396,380 - +1.8
396,380 - -0.2
396,380 - -0.4
396,380 - -0.2
396,380 - -0.7
396,380 - -0.7
396,380 - -0.4
396,380 - -0.1
396,412 + -0.3
396,412 + -1.7
396,413 - -0.2
396,413 - +0.9
396,413 - -2.5
396,413 - -1.7
396,413 - -0.5
396,413 - -0.4
396,413 - -1.1
396,506 + MPMX19_04091 0.14 +1.1
396,506 + MPMX19_04091 0.14 +0.5
396,506 + MPMX19_04091 0.14 -1.0
396,506 + MPMX19_04091 0.14 +0.7
396,506 + MPMX19_04091 0.14 +0.3
396,506 + MPMX19_04091 0.14 -0.7
396,506 + MPMX19_04091 0.14 +0.1
396,506 + MPMX19_04091 0.14 -0.1
396,506 + MPMX19_04091 0.14 -0.4
396,506 + MPMX19_04091 0.14 -0.4
396,506 + MPMX19_04091 0.14 -1.4
396,506 + MPMX19_04091 0.14 +0.1
396,506 + MPMX19_04091 0.14 +0.5
396,506 + MPMX19_04091 0.14 +0.0
396,506 + MPMX19_04091 0.14 -0.9
396,506 + MPMX19_04091 0.14 +0.0
396,506 + MPMX19_04091 0.14 -0.5
396,506 + MPMX19_04091 0.14 -0.6
396,506 + MPMX19_04091 0.14 -2.4
396,506 + MPMX19_04091 0.14 -0.6
396,506 + MPMX19_04091 0.14 -1.1
396,506 + MPMX19_04091 0.14 -1.5
396,506 + MPMX19_04091 0.14 +1.6
396,506 + MPMX19_04091 0.14 -1.0
396,506 + MPMX19_04091 0.14 -0.2
396,506 + MPMX19_04091 0.14 +0.2
396,506 + MPMX19_04091 0.14 -0.1
396,507 - MPMX19_04091 0.14 -0.1
396,507 - MPMX19_04091 0.14 -0.9
396,507 - MPMX19_04091 0.14 -1.1
396,507 - MPMX19_04091 0.14 -0.5
396,507 - MPMX19_04091 0.14 -0.7
396,507 - MPMX19_04091 0.14 -1.0
396,507 - MPMX19_04091 0.14 -0.4
396,507 - MPMX19_04091 0.14 -0.8
396,507 - MPMX19_04091 0.14 +0.1
396,507 - MPMX19_04091 0.14 +0.0
396,507 - MPMX19_04091 0.14 -1.0
396,507 - MPMX19_04091 0.14 -0.5
396,507 - MPMX19_04091 0.14 -0.7
396,507 - MPMX19_04091 0.14 -0.1
396,507 - MPMX19_04091 0.14 -0.8
396,507 - MPMX19_04091 0.14 -0.0
396,507 - MPMX19_04091 0.14 -2.5
396,507 - MPMX19_04091 0.14 +0.4
396,507 - MPMX19_04091 0.14 -0.5
396,507 - MPMX19_04091 0.14 -1.0
396,507 - MPMX19_04091 0.14 -0.5
396,507 - MPMX19_04091 0.14 -1.3
396,507 - MPMX19_04091 0.14 -0.0
396,507 - MPMX19_04091 0.14 -0.3
396,507 - MPMX19_04091 0.14 +0.3
396,507 - MPMX19_04091 0.14 -0.6
396,507 - MPMX19_04091 0.14 -0.6
396,507 - MPMX19_04091 0.14 +0.8
396,507 - MPMX19_04091 0.14 -1.3
396,507 - MPMX19_04091 0.14 +0.5
396,507 - MPMX19_04091 0.14 -0.4
396,507 - MPMX19_04091 0.14 -0.8
396,507 - MPMX19_04091 0.14 +1.1
396,508 + MPMX19_04091 0.14 +0.5
396,508 + MPMX19_04091 0.14 -0.2
396,509 - MPMX19_04091 0.14 -0.4
396,509 - MPMX19_04091 0.14 -1.3
396,598 + MPMX19_04091 0.23 -0.4
396,598 + MPMX19_04091 0.23 -0.5
396,598 + MPMX19_04091 0.23 -1.0
397,413 + MPMX19_04092 0.31 -2.1
397,413 + MPMX19_04092 0.31 -0.1
397,413 + MPMX19_04092 0.31 +0.6
397,413 + MPMX19_04092 0.31 -0.7
397,413 + MPMX19_04092 0.31 -1.1
397,413 + MPMX19_04092 0.31 -0.8
397,413 + MPMX19_04092 0.31 -0.5
397,413 + MPMX19_04092 0.31 +0.2
397,413 + MPMX19_04092 0.31 +1.2
397,413 + MPMX19_04092 0.31 -2.6
397,413 + MPMX19_04092 0.31 +0.6
397,414 - MPMX19_04092 0.31 -1.9
397,414 - MPMX19_04092 0.31 -1.7
397,414 - MPMX19_04092 0.31 -1.1
397,414 - MPMX19_04092 0.31 -2.0
397,414 - MPMX19_04092 0.31 -1.6
397,414 - MPMX19_04092 0.31 -0.3
397,414 - MPMX19_04092 0.31 -0.4
397,414 - MPMX19_04092 0.31 -1.0
397,414 - MPMX19_04092 0.31 +0.0
397,414 - MPMX19_04092 0.31 -0.1
397,414 - MPMX19_04092 0.31 -2.4
397,414 - MPMX19_04092 0.31 -1.5
397,414 - MPMX19_04092 0.31 -1.9
397,539 + MPMX19_04092 0.70 -1.6
397,539 + MPMX19_04092 0.70 +0.8
397,539 + MPMX19_04092 0.70 +0.2
397,539 + MPMX19_04092 0.70 -0.9
397,539 + MPMX19_04092 0.70 -0.9
397,539 + MPMX19_04092 0.70 -0.7
397,539 + MPMX19_04092 0.70 -1.4
397,539 + MPMX19_04092 0.70 -0.2
397,539 + MPMX19_04092 0.70 -1.5
397,539 + MPMX19_04092 0.70 -0.2
397,539 + MPMX19_04092 0.70 +1.5
397,539 + MPMX19_04092 0.70 +0.8
397,539 + MPMX19_04092 0.70 -1.4
397,539 + MPMX19_04092 0.70 -0.3
397,539 + MPMX19_04092 0.70 -0.0
397,540 - MPMX19_04092 0.70 -1.0
397,540 - MPMX19_04092 0.70 -0.4
397,540 - MPMX19_04092 0.70 -0.7
397,540 - MPMX19_04092 0.70 -1.4
397,540 - MPMX19_04092 0.70 -1.5
397,540 - MPMX19_04092 0.70 -0.7
397,540 - MPMX19_04092 0.70 -0.8
397,540 - MPMX19_04092 0.70 -0.6
397,578 + MPMX19_04092 0.82 -0.4
397,578 + MPMX19_04092 0.82 -0.5
397,579 - MPMX19_04092 0.83 -1.5
397,579 - MPMX19_04092 0.83 -0.9
397,579 - MPMX19_04092 0.83 -2.6
397,669 + +0.5
397,669 + -0.2
397,670 - +1.2
397,670 - -0.6
398,155 + MPMX19_04093 0.63 -1.0
398,156 - MPMX19_04093 0.63 -1.4
398,156 - MPMX19_04093 0.63 +0.1
398,203 + MPMX19_04093 0.69 -0.2
398,204 - MPMX19_04093 0.69 -2.2
398,251 + MPMX19_04093 0.75 -1.2
398,251 + MPMX19_04093 0.75 +1.5
398,252 - MPMX19_04093 0.75 -0.0
398,252 - MPMX19_04093 0.75 -1.8
398,252 - MPMX19_04093 0.75 -1.3
398,252 - MPMX19_04093 0.75 -0.7
398,252 - MPMX19_04093 0.75 -0.7
398,520 + -1.0
398,520 + +0.3
398,520 + -0.5
398,520 + +0.4
398,520 + -0.5
398,520 + -0.4
398,520 + -2.1
398,520 + -0.1
398,520 + -1.7
398,520 + +4.4
398,521 - -2.5
398,521 - -1.0
398,521 - +0.1
398,521 - +0.8
398,521 - -0.3
398,521 - -0.5
398,521 - -1.7
398,521 - +0.8
398,521 - +1.3

Or see this region's nucleotide sequence