Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04071

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04070 and MPMX19_04071 are separated by 29 nucleotidesMPMX19_04071 and MPMX19_04072 are separated by 324 nucleotidesMPMX19_04072 and MPMX19_04073 are separated by 209 nucleotides MPMX19_04070: MPMX19_04070 - hypothetical protein, at 375,251 to 376,267 _04070 MPMX19_04071: MPMX19_04071 - Catabolite control protein A, at 376,297 to 377,316 _04071 MPMX19_04072: MPMX19_04072 - tRNA-Arg, at 377,641 to 377,717 _04072 MPMX19_04073: MPMX19_04073 - hypothetical protein, at 377,927 to 379,399 _04073 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2at 375.336 kb on + strandat 375.336 kb on + strandat 375.336 kb on + strandat 375.336 kb on + strandat 375.336 kb on + strandat 375.336 kb on + strandat 375.336 kb on + strandat 375.337 kb on - strandat 375.337 kb on - strandat 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.447 kb on + strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.448 kb on - strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.507 kb on + strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.508 kb on - strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.567 kb on + strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.568 kb on - strand, within MPMX19_04070at 375.579 kb on + strand, within MPMX19_04070at 375.580 kb on - strand, within MPMX19_04070at 375.580 kb on - strand, within MPMX19_04070at 375.594 kb on + strand, within MPMX19_04070at 375.595 kb on - strand, within MPMX19_04070at 375.595 kb on - strand, within MPMX19_04070at 375.636 kb on + strand, within MPMX19_04070at 375.636 kb on + strand, within MPMX19_04070at 375.636 kb on + strand, within MPMX19_04070at 375.636 kb on + strand, within MPMX19_04070at 375.636 kb on + strand, within MPMX19_04070at 375.637 kb on - strand, within MPMX19_04070at 375.637 kb on - strand, within MPMX19_04070at 375.637 kb on - strand, within MPMX19_04070at 375.637 kb on - strand, within MPMX19_04070at 375.715 kb on - strand, within MPMX19_04070at 375.715 kb on - strand, within MPMX19_04070at 375.715 kb on - strand, within MPMX19_04070at 375.756 kb on + strand, within MPMX19_04070at 375.756 kb on + strand, within MPMX19_04070at 375.756 kb on + strand, within MPMX19_04070at 375.757 kb on - strand, within MPMX19_04070at 375.757 kb on - strand, within MPMX19_04070at 375.757 kb on - strand, within MPMX19_04070at 375.787 kb on - strand, within MPMX19_04070at 375.804 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.963 kb on + strand, within MPMX19_04070at 375.964 kb on - strand, within MPMX19_04070at 375.964 kb on - strand, within MPMX19_04070at 375.964 kb on - strand, within MPMX19_04070at 376.017 kb on + strand, within MPMX19_04070at 376.018 kb on - strand, within MPMX19_04070at 376.018 kb on - strand, within MPMX19_04070at 376.018 kb on - strand, within MPMX19_04070at 376.018 kb on - strand, within MPMX19_04070at 376.170 kb on + strandat 376.170 kb on + strandat 376.170 kb on + strandat 376.170 kb on + strandat 376.171 kb on - strandat 376.171 kb on - strandat 376.171 kb on - strandat 376.171 kb on - strandat 376.171 kb on - strandat 376.171 kb on - strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.298 kb on + strandat 376.299 kb on - strandat 376.299 kb on - strandat 376.299 kb on - strandat 376.299 kb on - strandat 376.299 kb on - strandat 376.299 kb on - strandat 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.871 kb on + strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.872 kb on - strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.883 kb on + strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 376.884 kb on - strand, within MPMX19_04071at 377.012 kb on + strand, within MPMX19_04071at 377.012 kb on + strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.013 kb on - strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.039 kb on + strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.040 kb on - strand, within MPMX19_04071at 377.789 kb on + strandat 377.789 kb on + strandat 377.928 kb on + strandat 377.928 kb on + strandat 377.929 kb on - strandat 377.929 kb on - strandat 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.111 kb on + strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073at 378.112 kb on - strand, within MPMX19_04073

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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375,336 + +0.2
375,336 + +1.4
375,336 + -0.8
375,336 + -0.1
375,336 + +0.4
375,336 + +0.2
375,336 + -0.1
375,337 - -1.1
375,337 - +1.0
375,447 + MPMX19_04070 0.19 +0.5
375,447 + MPMX19_04070 0.19 -0.1
375,447 + MPMX19_04070 0.19 -0.4
375,447 + MPMX19_04070 0.19 -1.1
375,447 + MPMX19_04070 0.19 -1.1
375,447 + MPMX19_04070 0.19 -0.0
375,447 + MPMX19_04070 0.19 -1.4
375,447 + MPMX19_04070 0.19 -0.9
375,447 + MPMX19_04070 0.19 -1.2
375,447 + MPMX19_04070 0.19 +1.2
375,447 + MPMX19_04070 0.19 -0.6
375,447 + MPMX19_04070 0.19 -1.7
375,447 + MPMX19_04070 0.19 -1.1
375,447 + MPMX19_04070 0.19 -2.1
375,447 + MPMX19_04070 0.19 -0.7
375,447 + MPMX19_04070 0.19 -0.0
375,447 + MPMX19_04070 0.19 -0.8
375,447 + MPMX19_04070 0.19 +1.1
375,447 + MPMX19_04070 0.19 +1.2
375,447 + MPMX19_04070 0.19 -1.2
375,447 + MPMX19_04070 0.19 +0.5
375,447 + MPMX19_04070 0.19 +1.3
375,447 + MPMX19_04070 0.19 -0.3
375,448 - MPMX19_04070 0.19 +0.7
375,448 - MPMX19_04070 0.19 -1.5
375,448 - MPMX19_04070 0.19 +0.1
375,448 - MPMX19_04070 0.19 +1.5
375,448 - MPMX19_04070 0.19 -0.3
375,448 - MPMX19_04070 0.19 -0.4
375,448 - MPMX19_04070 0.19 -0.3
375,448 - MPMX19_04070 0.19 +0.7
375,448 - MPMX19_04070 0.19 -0.3
375,448 - MPMX19_04070 0.19 -1.4
375,448 - MPMX19_04070 0.19 -0.9
375,448 - MPMX19_04070 0.19 +1.4
375,448 - MPMX19_04070 0.19 -0.0
375,448 - MPMX19_04070 0.19 -0.9
375,448 - MPMX19_04070 0.19 -0.2
375,448 - MPMX19_04070 0.19 +0.5
375,448 - MPMX19_04070 0.19 -0.2
375,448 - MPMX19_04070 0.19 -0.6
375,448 - MPMX19_04070 0.19 -0.2
375,448 - MPMX19_04070 0.19 -0.7
375,448 - MPMX19_04070 0.19 -0.6
375,448 - MPMX19_04070 0.19 -0.2
375,448 - MPMX19_04070 0.19 -1.8
375,448 - MPMX19_04070 0.19 -0.8
375,448 - MPMX19_04070 0.19 -0.4
375,448 - MPMX19_04070 0.19 -1.4
375,507 + MPMX19_04070 0.25 +1.0
375,507 + MPMX19_04070 0.25 +0.5
375,507 + MPMX19_04070 0.25 +0.4
375,507 + MPMX19_04070 0.25 +0.2
375,507 + MPMX19_04070 0.25 +0.1
375,507 + MPMX19_04070 0.25 -0.5
375,507 + MPMX19_04070 0.25 -2.2
375,508 - MPMX19_04070 0.25 +0.4
375,508 - MPMX19_04070 0.25 +1.2
375,508 - MPMX19_04070 0.25 -0.4
375,508 - MPMX19_04070 0.25 -0.9
375,508 - MPMX19_04070 0.25 -1.3
375,508 - MPMX19_04070 0.25 +0.6
375,508 - MPMX19_04070 0.25 -1.7
375,508 - MPMX19_04070 0.25 -0.9
375,508 - MPMX19_04070 0.25 +0.0
375,508 - MPMX19_04070 0.25 -1.8
375,567 + MPMX19_04070 0.31 -0.2
375,567 + MPMX19_04070 0.31 -0.7
375,567 + MPMX19_04070 0.31 +0.1
375,567 + MPMX19_04070 0.31 -0.4
375,567 + MPMX19_04070 0.31 -1.0
375,567 + MPMX19_04070 0.31 -0.9
375,567 + MPMX19_04070 0.31 -0.8
375,568 - MPMX19_04070 0.31 -0.3
375,568 - MPMX19_04070 0.31 -1.6
375,568 - MPMX19_04070 0.31 -1.2
375,568 - MPMX19_04070 0.31 -1.0
375,568 - MPMX19_04070 0.31 -0.0
375,568 - MPMX19_04070 0.31 -1.1
375,568 - MPMX19_04070 0.31 -0.5
375,568 - MPMX19_04070 0.31 -1.0
375,568 - MPMX19_04070 0.31 +0.4
375,568 - MPMX19_04070 0.31 -1.4
375,579 + MPMX19_04070 0.32 -1.0
375,580 - MPMX19_04070 0.32 +0.5
375,580 - MPMX19_04070 0.32 +1.0
375,594 + MPMX19_04070 0.34 +0.8
375,595 - MPMX19_04070 0.34 -1.5
375,595 - MPMX19_04070 0.34 +0.1
375,636 + MPMX19_04070 0.38 +0.1
375,636 + MPMX19_04070 0.38 -0.0
375,636 + MPMX19_04070 0.38 -0.7
375,636 + MPMX19_04070 0.38 -0.9
375,636 + MPMX19_04070 0.38 +0.7
375,637 - MPMX19_04070 0.38 +0.2
375,637 - MPMX19_04070 0.38 -1.2
375,637 - MPMX19_04070 0.38 +1.8
375,637 - MPMX19_04070 0.38 +0.5
375,715 - MPMX19_04070 0.46 -1.5
375,715 - MPMX19_04070 0.46 -0.1
375,715 - MPMX19_04070 0.46 -0.4
375,756 + MPMX19_04070 0.50 +0.8
375,756 + MPMX19_04070 0.50 -0.6
375,756 + MPMX19_04070 0.50 +2.2
375,757 - MPMX19_04070 0.50 +0.6
375,757 - MPMX19_04070 0.50 -0.1
375,757 - MPMX19_04070 0.50 +0.5
375,787 - MPMX19_04070 0.53 +0.2
375,804 + MPMX19_04070 0.54 -0.3
375,963 + MPMX19_04070 0.70 +1.0
375,963 + MPMX19_04070 0.70 -0.0
375,963 + MPMX19_04070 0.70 -0.5
375,963 + MPMX19_04070 0.70 -0.3
375,963 + MPMX19_04070 0.70 +0.2
375,963 + MPMX19_04070 0.70 -0.3
375,963 + MPMX19_04070 0.70 -0.5
375,964 - MPMX19_04070 0.70 -0.3
375,964 - MPMX19_04070 0.70 -1.2
375,964 - MPMX19_04070 0.70 -0.4
376,017 + MPMX19_04070 0.75 -0.9
376,018 - MPMX19_04070 0.75 -0.9
376,018 - MPMX19_04070 0.75 -0.8
376,018 - MPMX19_04070 0.75 -0.1
376,018 - MPMX19_04070 0.75 -1.5
376,170 + -0.2
376,170 + +2.6
376,170 + +0.8
376,170 + -0.8
376,171 - +0.3
376,171 - +1.0
376,171 - -0.4
376,171 - +0.3
376,171 - +0.2
376,171 - -1.4
376,298 + -2.5
376,298 + -0.5
376,298 + +0.2
376,298 + -0.4
376,298 + +0.4
376,298 + +0.0
376,298 + -0.7
376,298 + -0.0
376,298 + -0.5
376,298 + -0.7
376,298 + -0.2
376,299 - +1.1
376,299 - -0.2
376,299 - -1.0
376,299 - -1.2
376,299 - +0.1
376,299 - -0.4
376,871 + MPMX19_04071 0.56 +0.2
376,871 + MPMX19_04071 0.56 +0.1
376,871 + MPMX19_04071 0.56 +0.0
376,871 + MPMX19_04071 0.56 -1.8
376,871 + MPMX19_04071 0.56 +0.5
376,871 + MPMX19_04071 0.56 +0.0
376,871 + MPMX19_04071 0.56 -0.0
376,871 + MPMX19_04071 0.56 -0.2
376,872 - MPMX19_04071 0.56 +0.3
376,872 - MPMX19_04071 0.56 -1.4
376,872 - MPMX19_04071 0.56 -0.4
376,872 - MPMX19_04071 0.56 -0.1
376,872 - MPMX19_04071 0.56 -1.0
376,872 - MPMX19_04071 0.56 -1.1
376,872 - MPMX19_04071 0.56 -0.8
376,872 - MPMX19_04071 0.56 -0.8
376,883 + MPMX19_04071 0.57 -1.3
376,883 + MPMX19_04071 0.57 -0.9
376,883 + MPMX19_04071 0.57 -0.1
376,883 + MPMX19_04071 0.57 +1.5
376,883 + MPMX19_04071 0.57 +1.0
376,883 + MPMX19_04071 0.57 -1.1
376,883 + MPMX19_04071 0.57 -1.0
376,883 + MPMX19_04071 0.57 -1.5
376,883 + MPMX19_04071 0.57 +0.3
376,883 + MPMX19_04071 0.57 -0.0
376,883 + MPMX19_04071 0.57 -0.8
376,883 + MPMX19_04071 0.57 -1.0
376,884 - MPMX19_04071 0.58 -1.4
376,884 - MPMX19_04071 0.58 +0.4
376,884 - MPMX19_04071 0.58 -0.9
376,884 - MPMX19_04071 0.58 +0.5
376,884 - MPMX19_04071 0.58 +0.1
376,884 - MPMX19_04071 0.58 -1.2
377,012 + MPMX19_04071 0.70 -0.1
377,012 + MPMX19_04071 0.70 -0.7
377,013 - MPMX19_04071 0.70 -0.3
377,013 - MPMX19_04071 0.70 -0.3
377,013 - MPMX19_04071 0.70 -0.3
377,013 - MPMX19_04071 0.70 -1.4
377,039 + MPMX19_04071 0.73 -0.6
377,039 + MPMX19_04071 0.73 -0.6
377,039 + MPMX19_04071 0.73 -0.6
377,039 + MPMX19_04071 0.73 -1.0
377,040 - MPMX19_04071 0.73 -0.5
377,040 - MPMX19_04071 0.73 -0.9
377,040 - MPMX19_04071 0.73 -1.0
377,789 + +1.5
377,789 + -0.9
377,928 + +0.9
377,928 + +1.1
377,929 - +1.1
377,929 - +0.2
378,111 + MPMX19_04073 0.12 -0.8
378,111 + MPMX19_04073 0.12 +1.2
378,111 + MPMX19_04073 0.12 -0.4
378,112 - MPMX19_04073 0.13 +1.4
378,112 - MPMX19_04073 0.13 -0.4
378,112 - MPMX19_04073 0.13 +0.1
378,112 - MPMX19_04073 0.13 -1.1

Or see this region's nucleotide sequence