Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04058

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04056 and MPMX19_04057 overlap by 4 nucleotidesMPMX19_04057 and MPMX19_04058 overlap by 4 nucleotidesMPMX19_04058 and MPMX19_04059 are separated by 164 nucleotides MPMX19_04056: MPMX19_04056 - Aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 359,845 to 362,130 _04056 MPMX19_04057: MPMX19_04057 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 362,127 to 363,116 _04057 MPMX19_04058: MPMX19_04058 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 363,113 to 363,673 _04058 MPMX19_04059: MPMX19_04059 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 363,838 to 364,947 _04059 Position (kb) 363 364Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.410 kb on + strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.411 kb on - strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.437 kb on + strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.438 kb on - strand, within MPMX19_04057at 362.552 kb on + strand, within MPMX19_04057at 362.553 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.681 kb on - strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.758 kb on + strand, within MPMX19_04057at 362.759 kb on - strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.857 kb on + strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 362.858 kb on - strand, within MPMX19_04057at 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.037 kb on + strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.038 kb on - strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.100 kb on + strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.101 kb on - strandat 363.204 kb on + strand, within MPMX19_04058at 363.204 kb on + strand, within MPMX19_04058at 363.204 kb on + strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.205 kb on - strand, within MPMX19_04058at 363.366 kb on + strand, within MPMX19_04058at 363.468 kb on + strand, within MPMX19_04058at 363.468 kb on + strand, within MPMX19_04058at 363.469 kb on - strand, within MPMX19_04058at 363.818 kb on - strandat 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.974 kb on + strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 363.975 kb on - strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.067 kb on + strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059at 364.068 kb on - strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.262 kb on + strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.263 kb on - strand, within MPMX19_04059at 364.283 kb on + strand, within MPMX19_04059at 364.283 kb on + strand, within MPMX19_04059at 364.284 kb on - strand, within MPMX19_04059at 364.284 kb on - strand, within MPMX19_04059at 364.284 kb on - strand, within MPMX19_04059at 364.382 kb on + strand, within MPMX19_04059at 364.382 kb on + strand, within MPMX19_04059at 364.382 kb on + strand, within MPMX19_04059at 364.382 kb on + strand, within MPMX19_04059at 364.382 kb on + strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059at 364.383 kb on - strand, within MPMX19_04059

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
362,410 + MPMX19_04057 0.29 +1.6
362,410 + MPMX19_04057 0.29 +0.1
362,410 + MPMX19_04057 0.29 -1.9
362,410 + MPMX19_04057 0.29 -0.4
362,410 + MPMX19_04057 0.29 +1.2
362,410 + MPMX19_04057 0.29 -1.4
362,410 + MPMX19_04057 0.29 -1.8
362,410 + MPMX19_04057 0.29 -1.2
362,410 + MPMX19_04057 0.29 -1.2
362,410 + MPMX19_04057 0.29 -1.1
362,411 - MPMX19_04057 0.29 +1.8
362,411 - MPMX19_04057 0.29 -1.2
362,411 - MPMX19_04057 0.29 -1.5
362,411 - MPMX19_04057 0.29 -1.2
362,411 - MPMX19_04057 0.29 -1.0
362,411 - MPMX19_04057 0.29 -0.7
362,411 - MPMX19_04057 0.29 +0.1
362,437 + MPMX19_04057 0.31 -0.4
362,437 + MPMX19_04057 0.31 +0.5
362,438 - MPMX19_04057 0.31 -0.9
362,438 - MPMX19_04057 0.31 -2.2
362,438 - MPMX19_04057 0.31 -0.2
362,438 - MPMX19_04057 0.31 -1.0
362,552 + MPMX19_04057 0.43 -0.6
362,553 - MPMX19_04057 0.43 -0.8
362,681 - MPMX19_04057 0.56 -0.2
362,681 - MPMX19_04057 0.56 +0.5
362,681 - MPMX19_04057 0.56 -2.0
362,758 + MPMX19_04057 0.64 -0.7
362,758 + MPMX19_04057 0.64 +0.2
362,758 + MPMX19_04057 0.64 +0.3
362,758 + MPMX19_04057 0.64 +0.0
362,759 - MPMX19_04057 0.64 -0.4
362,857 + MPMX19_04057 0.74 -0.4
362,857 + MPMX19_04057 0.74 -2.4
362,858 - MPMX19_04057 0.74 -0.2
362,858 - MPMX19_04057 0.74 +0.8
362,858 - MPMX19_04057 0.74 -1.1
362,858 - MPMX19_04057 0.74 -1.0
363,037 + -1.5
363,037 + +0.8
363,037 + +0.2
363,037 + +0.4
363,037 + +2.2
363,038 - +0.6
363,038 - +1.2
363,038 - -0.0
363,038 - -1.9
363,100 + -0.2
363,100 + +3.0
363,100 + -0.7
363,100 + -1.0
363,100 + -0.0
363,100 + -0.2
363,100 + +0.5
363,100 + -0.3
363,100 + -1.7
363,101 - +0.8
363,101 - +0.4
363,101 - -0.3
363,101 - -0.0
363,101 - -1.7
363,101 - -0.1
363,204 + MPMX19_04058 0.16 -1.1
363,204 + MPMX19_04058 0.16 +1.8
363,204 + MPMX19_04058 0.16 -0.5
363,205 - MPMX19_04058 0.16 -0.9
363,205 - MPMX19_04058 0.16 -0.3
363,205 - MPMX19_04058 0.16 +0.2
363,205 - MPMX19_04058 0.16 +1.0
363,205 - MPMX19_04058 0.16 +0.5
363,366 + MPMX19_04058 0.45 -1.5
363,468 + MPMX19_04058 0.63 -1.2
363,468 + MPMX19_04058 0.63 -1.5
363,469 - MPMX19_04058 0.63 +0.2
363,818 - -0.2
363,974 + MPMX19_04059 0.12 +2.5
363,974 + MPMX19_04059 0.12 +0.0
363,974 + MPMX19_04059 0.12 -0.2
363,974 + MPMX19_04059 0.12 -0.5
363,974 + MPMX19_04059 0.12 -0.5
363,974 + MPMX19_04059 0.12 +0.7
363,974 + MPMX19_04059 0.12 -2.3
363,974 + MPMX19_04059 0.12 +0.5
363,974 + MPMX19_04059 0.12 -1.2
363,974 + MPMX19_04059 0.12 -2.3
363,974 + MPMX19_04059 0.12 -0.3
363,974 + MPMX19_04059 0.12 -0.2
363,974 + MPMX19_04059 0.12 -1.5
363,975 - MPMX19_04059 0.12 -0.5
363,975 - MPMX19_04059 0.12 +1.2
363,975 - MPMX19_04059 0.12 -0.9
363,975 - MPMX19_04059 0.12 -0.8
363,975 - MPMX19_04059 0.12 +1.4
363,975 - MPMX19_04059 0.12 -0.1
363,975 - MPMX19_04059 0.12 -0.8
363,975 - MPMX19_04059 0.12 +0.2
363,975 - MPMX19_04059 0.12 -0.9
363,975 - MPMX19_04059 0.12 -1.4
363,975 - MPMX19_04059 0.12 -1.1
363,975 - MPMX19_04059 0.12 -0.1
363,975 - MPMX19_04059 0.12 -0.6
363,975 - MPMX19_04059 0.12 -1.0
363,975 - MPMX19_04059 0.12 +0.4
363,975 - MPMX19_04059 0.12 -0.7
363,975 - MPMX19_04059 0.12 -1.0
363,975 - MPMX19_04059 0.12 -0.5
363,975 - MPMX19_04059 0.12 -0.8
364,067 + MPMX19_04059 0.21 +0.1
364,067 + MPMX19_04059 0.21 -0.3
364,067 + MPMX19_04059 0.21 +0.2
364,067 + MPMX19_04059 0.21 -0.4
364,067 + MPMX19_04059 0.21 -0.8
364,067 + MPMX19_04059 0.21 +0.0
364,067 + MPMX19_04059 0.21 +0.5
364,068 - MPMX19_04059 0.21 -1.8
364,068 - MPMX19_04059 0.21 -0.2
364,068 - MPMX19_04059 0.21 -1.0
364,262 + MPMX19_04059 0.38 -1.0
364,262 + MPMX19_04059 0.38 +1.1
364,262 + MPMX19_04059 0.38 -1.0
364,262 + MPMX19_04059 0.38 -1.9
364,262 + MPMX19_04059 0.38 -0.7
364,262 + MPMX19_04059 0.38 -1.7
364,262 + MPMX19_04059 0.38 +0.0
364,262 + MPMX19_04059 0.38 +2.1
364,262 + MPMX19_04059 0.38 -0.0
364,262 + MPMX19_04059 0.38 -0.1
364,262 + MPMX19_04059 0.38 -0.2
364,262 + MPMX19_04059 0.38 -0.2
364,262 + MPMX19_04059 0.38 +0.8
364,262 + MPMX19_04059 0.38 +0.8
364,262 + MPMX19_04059 0.38 -0.2
364,262 + MPMX19_04059 0.38 -1.8
364,262 + MPMX19_04059 0.38 -0.7
364,262 + MPMX19_04059 0.38 +0.3
364,262 + MPMX19_04059 0.38 -0.4
364,262 + MPMX19_04059 0.38 +0.8
364,262 + MPMX19_04059 0.38 -0.7
364,262 + MPMX19_04059 0.38 -1.0
364,262 + MPMX19_04059 0.38 +0.9
364,262 + MPMX19_04059 0.38 -1.4
364,262 + MPMX19_04059 0.38 -0.4
364,262 + MPMX19_04059 0.38 -0.5
364,262 + MPMX19_04059 0.38 -1.0
364,262 + MPMX19_04059 0.38 -0.3
364,262 + MPMX19_04059 0.38 +0.1
364,262 + MPMX19_04059 0.38 +0.8
364,262 + MPMX19_04059 0.38 +1.6
364,262 + MPMX19_04059 0.38 +0.2
364,262 + MPMX19_04059 0.38 -0.8
364,262 + MPMX19_04059 0.38 -0.2
364,263 - MPMX19_04059 0.38 -1.0
364,263 - MPMX19_04059 0.38 -2.5
364,263 - MPMX19_04059 0.38 -1.4
364,263 - MPMX19_04059 0.38 -1.2
364,263 - MPMX19_04059 0.38 -0.1
364,263 - MPMX19_04059 0.38 -0.5
364,263 - MPMX19_04059 0.38 +0.8
364,263 - MPMX19_04059 0.38 +0.7
364,263 - MPMX19_04059 0.38 +1.6
364,263 - MPMX19_04059 0.38 +0.3
364,263 - MPMX19_04059 0.38 -2.0
364,263 - MPMX19_04059 0.38 +0.0
364,263 - MPMX19_04059 0.38 -0.7
364,263 - MPMX19_04059 0.38 +0.8
364,263 - MPMX19_04059 0.38 +0.1
364,263 - MPMX19_04059 0.38 -1.3
364,263 - MPMX19_04059 0.38 -0.6
364,263 - MPMX19_04059 0.38 -1.2
364,263 - MPMX19_04059 0.38 -1.7
364,263 - MPMX19_04059 0.38 -0.3
364,263 - MPMX19_04059 0.38 -2.4
364,263 - MPMX19_04059 0.38 +0.2
364,263 - MPMX19_04059 0.38 -0.2
364,263 - MPMX19_04059 0.38 -0.1
364,263 - MPMX19_04059 0.38 -0.2
364,263 - MPMX19_04059 0.38 +0.6
364,263 - MPMX19_04059 0.38 +0.8
364,263 - MPMX19_04059 0.38 +1.8
364,263 - MPMX19_04059 0.38 +0.5
364,263 - MPMX19_04059 0.38 -0.6
364,263 - MPMX19_04059 0.38 -1.1
364,263 - MPMX19_04059 0.38 -1.7
364,283 + MPMX19_04059 0.40 -0.5
364,283 + MPMX19_04059 0.40 -0.4
364,284 - MPMX19_04059 0.40 -3.4
364,284 - MPMX19_04059 0.40 -2.1
364,284 - MPMX19_04059 0.40 -1.2
364,382 + MPMX19_04059 0.49 +0.8
364,382 + MPMX19_04059 0.49 -1.0
364,382 + MPMX19_04059 0.49 +1.1
364,382 + MPMX19_04059 0.49 +1.2
364,382 + MPMX19_04059 0.49 +0.0
364,383 - MPMX19_04059 0.49 +0.6
364,383 - MPMX19_04059 0.49 +0.7
364,383 - MPMX19_04059 0.49 -0.6
364,383 - MPMX19_04059 0.49 +0.5
364,383 - MPMX19_04059 0.49 +1.2
364,383 - MPMX19_04059 0.49 -0.8

Or see this region's nucleotide sequence