Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04007

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04006 and MPMX19_04007 overlap by 4 nucleotidesMPMX19_04007 and MPMX19_04008 overlap by 26 nucleotides MPMX19_04006: MPMX19_04006 - Glutathione transport system permease protein GsiC, at 302,700 to 303,620 _04006 MPMX19_04007: MPMX19_04007 - Glutathione transport system permease protein GsiD, at 303,617 to 304,504 _04007 MPMX19_04008: MPMX19_04008 - Beta-peptidyl aminopeptidase BapA, at 304,479 to 305,588 _04008 Position (kb) 303 304 305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 302.673 kb on + strandat 302.681 kb on + strandat 302.682 kb on - strandat 302.682 kb on - strandat 302.710 kb on - strandat 302.892 kb on + strand, within MPMX19_04006at 302.892 kb on + strand, within MPMX19_04006at 302.892 kb on + strand, within MPMX19_04006at 302.892 kb on + strand, within MPMX19_04006at 302.892 kb on + strand, within MPMX19_04006at 302.892 kb on + strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.893 kb on - strand, within MPMX19_04006at 302.997 kb on + strand, within MPMX19_04006at 302.997 kb on + strand, within MPMX19_04006at 302.997 kb on + strand, within MPMX19_04006at 302.998 kb on - strand, within MPMX19_04006at 302.998 kb on - strand, within MPMX19_04006at 302.998 kb on - strand, within MPMX19_04006at 303.198 kb on + strand, within MPMX19_04006at 303.199 kb on - strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.216 kb on + strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.217 kb on - strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.309 kb on + strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.310 kb on - strand, within MPMX19_04006at 303.502 kb on - strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.510 kb on + strand, within MPMX19_04006at 303.511 kb on - strand, within MPMX19_04006at 303.511 kb on - strand, within MPMX19_04006at 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.585 kb on + strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.586 kb on - strandat 303.612 kb on + strandat 303.806 kb on + strand, within MPMX19_04007at 303.860 kb on + strand, within MPMX19_04007at 303.860 kb on + strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 303.861 kb on - strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.100 kb on + strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.101 kb on - strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.178 kb on + strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.179 kb on - strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.268 kb on + strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.269 kb on - strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.385 kb on + strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.386 kb on - strand, within MPMX19_04007at 304.415 kb on + strand, within MPMX19_04007at 304.415 kb on + strand, within MPMX19_04007at 304.416 kb on - strandat 304.686 kb on + strand, within MPMX19_04008at 304.687 kb on - strand, within MPMX19_04008at 305.396 kb on + strand, within MPMX19_04008

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
302,673 + -1.6
302,681 + -0.4
302,682 - -0.1
302,682 - -0.1
302,710 - -0.9
302,892 + MPMX19_04006 0.21 +0.8
302,892 + MPMX19_04006 0.21 -0.8
302,892 + MPMX19_04006 0.21 -0.8
302,892 + MPMX19_04006 0.21 -0.7
302,892 + MPMX19_04006 0.21 +0.0
302,892 + MPMX19_04006 0.21 -0.2
302,893 - MPMX19_04006 0.21 +0.2
302,893 - MPMX19_04006 0.21 -0.2
302,893 - MPMX19_04006 0.21 -1.4
302,893 - MPMX19_04006 0.21 -2.1
302,893 - MPMX19_04006 0.21 -1.8
302,893 - MPMX19_04006 0.21 -0.9
302,997 + MPMX19_04006 0.32 +0.3
302,997 + MPMX19_04006 0.32 -0.1
302,997 + MPMX19_04006 0.32 +1.0
302,998 - MPMX19_04006 0.32 -0.7
302,998 - MPMX19_04006 0.32 -1.1
302,998 - MPMX19_04006 0.32 +0.0
303,198 + MPMX19_04006 0.54 -0.7
303,199 - MPMX19_04006 0.54 -0.9
303,216 + MPMX19_04006 0.56 -0.8
303,216 + MPMX19_04006 0.56 +0.2
303,216 + MPMX19_04006 0.56 +0.2
303,216 + MPMX19_04006 0.56 +1.2
303,216 + MPMX19_04006 0.56 -0.4
303,216 + MPMX19_04006 0.56 -1.2
303,216 + MPMX19_04006 0.56 +0.6
303,216 + MPMX19_04006 0.56 -0.0
303,216 + MPMX19_04006 0.56 -0.5
303,216 + MPMX19_04006 0.56 -0.7
303,216 + MPMX19_04006 0.56 +0.4
303,216 + MPMX19_04006 0.56 +0.8
303,216 + MPMX19_04006 0.56 -1.2
303,216 + MPMX19_04006 0.56 +0.5
303,216 + MPMX19_04006 0.56 -0.2
303,216 + MPMX19_04006 0.56 -0.7
303,216 + MPMX19_04006 0.56 +1.0
303,216 + MPMX19_04006 0.56 -0.9
303,216 + MPMX19_04006 0.56 -0.8
303,216 + MPMX19_04006 0.56 +1.4
303,217 - MPMX19_04006 0.56 +0.2
303,217 - MPMX19_04006 0.56 +0.2
303,217 - MPMX19_04006 0.56 +0.6
303,217 - MPMX19_04006 0.56 +0.2
303,217 - MPMX19_04006 0.56 -1.2
303,217 - MPMX19_04006 0.56 -1.9
303,217 - MPMX19_04006 0.56 -0.3
303,217 - MPMX19_04006 0.56 -0.2
303,217 - MPMX19_04006 0.56 +0.5
303,217 - MPMX19_04006 0.56 +1.4
303,217 - MPMX19_04006 0.56 +0.3
303,217 - MPMX19_04006 0.56 -1.6
303,217 - MPMX19_04006 0.56 +0.2
303,217 - MPMX19_04006 0.56 +1.0
303,217 - MPMX19_04006 0.56 -0.6
303,217 - MPMX19_04006 0.56 -0.5
303,309 + MPMX19_04006 0.66 -2.3
303,309 + MPMX19_04006 0.66 -0.9
303,309 + MPMX19_04006 0.66 +1.0
303,309 + MPMX19_04006 0.66 -2.2
303,309 + MPMX19_04006 0.66 -0.9
303,309 + MPMX19_04006 0.66 -0.2
303,309 + MPMX19_04006 0.66 +0.9
303,309 + MPMX19_04006 0.66 -0.2
303,310 - MPMX19_04006 0.66 -1.2
303,310 - MPMX19_04006 0.66 +2.4
303,310 - MPMX19_04006 0.66 -0.3
303,310 - MPMX19_04006 0.66 -0.2
303,310 - MPMX19_04006 0.66 +0.3
303,310 - MPMX19_04006 0.66 -1.8
303,310 - MPMX19_04006 0.66 -0.3
303,502 - MPMX19_04006 0.87 +1.8
303,510 + MPMX19_04006 0.88 +0.2
303,510 + MPMX19_04006 0.88 -0.7
303,510 + MPMX19_04006 0.88 -0.4
303,510 + MPMX19_04006 0.88 +0.2
303,511 - MPMX19_04006 0.88 -0.8
303,511 - MPMX19_04006 0.88 -1.4
303,585 + +0.4
303,585 + +0.3
303,585 + +0.3
303,585 + -0.5
303,585 + -0.2
303,585 + -0.3
303,585 + -1.2
303,586 - +0.0
303,586 - -0.7
303,586 - -1.1
303,586 - -0.1
303,586 - -1.9
303,586 - -1.2
303,586 - -0.4
303,586 - -0.2
303,586 - +0.4
303,586 - +0.8
303,612 + +0.4
303,806 + MPMX19_04007 0.21 -0.5
303,860 + MPMX19_04007 0.27 -0.2
303,860 + MPMX19_04007 0.27 -0.3
303,861 - MPMX19_04007 0.27 -0.6
303,861 - MPMX19_04007 0.27 -1.1
303,861 - MPMX19_04007 0.27 +2.2
303,861 - MPMX19_04007 0.27 -0.1
303,861 - MPMX19_04007 0.27 -1.4
303,861 - MPMX19_04007 0.27 -0.9
304,100 + MPMX19_04007 0.54 -0.2
304,100 + MPMX19_04007 0.54 +1.0
304,100 + MPMX19_04007 0.54 +0.2
304,100 + MPMX19_04007 0.54 -1.0
304,100 + MPMX19_04007 0.54 -1.6
304,100 + MPMX19_04007 0.54 -2.9
304,100 + MPMX19_04007 0.54 +0.4
304,100 + MPMX19_04007 0.54 -0.9
304,100 + MPMX19_04007 0.54 -0.6
304,100 + MPMX19_04007 0.54 +0.6
304,100 + MPMX19_04007 0.54 +0.5
304,100 + MPMX19_04007 0.54 +1.4
304,100 + MPMX19_04007 0.54 -0.2
304,101 - MPMX19_04007 0.55 +0.3
304,101 - MPMX19_04007 0.55 -0.9
304,101 - MPMX19_04007 0.55 -0.5
304,101 - MPMX19_04007 0.55 -1.1
304,101 - MPMX19_04007 0.55 +0.4
304,101 - MPMX19_04007 0.55 +1.3
304,101 - MPMX19_04007 0.55 -1.2
304,101 - MPMX19_04007 0.55 -1.0
304,101 - MPMX19_04007 0.55 -1.8
304,101 - MPMX19_04007 0.55 -0.6
304,101 - MPMX19_04007 0.55 -0.1
304,101 - MPMX19_04007 0.55 -1.2
304,101 - MPMX19_04007 0.55 +1.5
304,101 - MPMX19_04007 0.55 -0.8
304,101 - MPMX19_04007 0.55 -0.6
304,101 - MPMX19_04007 0.55 +0.2
304,101 - MPMX19_04007 0.55 -0.6
304,178 + MPMX19_04007 0.63 -0.1
304,178 + MPMX19_04007 0.63 +0.4
304,178 + MPMX19_04007 0.63 +1.0
304,178 + MPMX19_04007 0.63 -0.6
304,178 + MPMX19_04007 0.63 -0.7
304,178 + MPMX19_04007 0.63 +0.2
304,178 + MPMX19_04007 0.63 -0.3
304,179 - MPMX19_04007 0.63 -0.2
304,179 - MPMX19_04007 0.63 +1.2
304,179 - MPMX19_04007 0.63 -0.6
304,179 - MPMX19_04007 0.63 -0.5
304,268 + MPMX19_04007 0.73 -1.2
304,268 + MPMX19_04007 0.73 -0.2
304,268 + MPMX19_04007 0.73 -1.7
304,268 + MPMX19_04007 0.73 +0.1
304,268 + MPMX19_04007 0.73 -0.4
304,268 + MPMX19_04007 0.73 -0.4
304,268 + MPMX19_04007 0.73 -1.6
304,268 + MPMX19_04007 0.73 -0.5
304,268 + MPMX19_04007 0.73 +0.9
304,269 - MPMX19_04007 0.73 -0.4
304,269 - MPMX19_04007 0.73 -0.0
304,269 - MPMX19_04007 0.73 -0.7
304,269 - MPMX19_04007 0.73 -1.1
304,269 - MPMX19_04007 0.73 +0.3
304,385 + MPMX19_04007 0.86 -1.0
304,385 + MPMX19_04007 0.86 -1.2
304,385 + MPMX19_04007 0.86 +0.2
304,385 + MPMX19_04007 0.86 -0.2
304,385 + MPMX19_04007 0.86 +0.8
304,385 + MPMX19_04007 0.86 -2.0
304,385 + MPMX19_04007 0.86 -0.5
304,385 + MPMX19_04007 0.86 -0.2
304,385 + MPMX19_04007 0.86 +0.4
304,385 + MPMX19_04007 0.86 +0.0
304,385 + MPMX19_04007 0.86 -1.0
304,385 + MPMX19_04007 0.86 +1.0
304,385 + MPMX19_04007 0.86 -1.7
304,385 + MPMX19_04007 0.86 -0.1
304,386 - MPMX19_04007 0.87 -0.6
304,386 - MPMX19_04007 0.87 +0.8
304,386 - MPMX19_04007 0.87 -0.5
304,386 - MPMX19_04007 0.87 -1.4
304,386 - MPMX19_04007 0.87 -1.2
304,386 - MPMX19_04007 0.87 +0.4
304,386 - MPMX19_04007 0.87 +0.8
304,386 - MPMX19_04007 0.87 +1.5
304,386 - MPMX19_04007 0.87 +1.2
304,386 - MPMX19_04007 0.87 +0.5
304,386 - MPMX19_04007 0.87 -0.7
304,415 + MPMX19_04007 0.90 -1.4
304,415 + MPMX19_04007 0.90 -0.9
304,416 - -0.6
304,686 + MPMX19_04008 0.19 +0.3
304,687 - MPMX19_04008 0.19 -0.2
305,396 + MPMX19_04008 0.83 +0.4

Or see this region's nucleotide sequence