Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03934

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03933 and MPMX19_03934 are separated by 31 nucleotidesMPMX19_03934 and MPMX19_03935 are separated by 300 nucleotides MPMX19_03933: MPMX19_03933 - hypothetical protein, at 212,688 to 214,127 _03933 MPMX19_03934: MPMX19_03934 - hypothetical protein, at 214,159 to 215,154 _03934 MPMX19_03935: MPMX19_03935 - Acyl-CoA dehydrogenase, short-chain specific, at 215,455 to 216,627 _03935 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.372 kb on + strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.373 kb on - strand, within MPMX19_03933at 213.685 kb on - strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.972 kb on + strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 213.973 kb on - strand, within MPMX19_03933at 214.029 kb on + strandat 214.029 kb on + strandat 214.029 kb on + strandat 214.029 kb on + strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.030 kb on - strandat 214.125 kb on + strandat 214.126 kb on - strandat 214.126 kb on - strandat 214.126 kb on - strandat 214.205 kb on + strandat 214.205 kb on + strandat 214.206 kb on - strandat 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.520 kb on + strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934at 214.521 kb on - strand, within MPMX19_03934at 215.189 kb on + strandat 215.190 kb on - strandat 215.191 kb on + strandat 215.191 kb on + strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.192 kb on - strandat 215.209 kb on + strandat 215.209 kb on + strandat 215.210 kb on - strandat 215.210 kb on - strandat 215.210 kb on - strandat 215.211 kb on + strandat 215.211 kb on + strandat 215.211 kb on + strandat 215.211 kb on + strandat 215.234 kb on + strandat 215.234 kb on + strandat 215.235 kb on - strandat 215.235 kb on - strandat 215.239 kb on + strandat 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.653 kb on + strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.654 kb on - strand, within MPMX19_03935at 215.674 kb on + strand, within MPMX19_03935at 215.674 kb on + strand, within MPMX19_03935at 215.675 kb on - strand, within MPMX19_03935at 215.737 kb on + strand, within MPMX19_03935at 215.737 kb on + strand, within MPMX19_03935at 215.737 kb on + strand, within MPMX19_03935at 215.738 kb on - strand, within MPMX19_03935at 215.738 kb on - strand, within MPMX19_03935at 215.738 kb on - strand, within MPMX19_03935at 215.807 kb on - strand, within MPMX19_03935at 215.835 kb on + strand, within MPMX19_03935at 215.835 kb on + strand, within MPMX19_03935at 215.835 kb on + strand, within MPMX19_03935at 215.835 kb on + strand, within MPMX19_03935at 215.835 kb on + strand, within MPMX19_03935at 215.836 kb on - strand, within MPMX19_03935at 215.836 kb on - strand, within MPMX19_03935at 215.920 kb on + strand, within MPMX19_03935at 215.920 kb on + strand, within MPMX19_03935at 215.920 kb on + strand, within MPMX19_03935at 215.920 kb on + strand, within MPMX19_03935at 215.920 kb on + strand, within MPMX19_03935at 215.921 kb on - strand, within MPMX19_03935at 215.921 kb on - strand, within MPMX19_03935at 215.983 kb on + strand, within MPMX19_03935at 215.983 kb on + strand, within MPMX19_03935at 215.983 kb on + strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935at 215.984 kb on - strand, within MPMX19_03935

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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213,372 + MPMX19_03933 0.47 -1.4
213,372 + MPMX19_03933 0.47 -0.5
213,372 + MPMX19_03933 0.47 -0.4
213,372 + MPMX19_03933 0.47 +0.6
213,372 + MPMX19_03933 0.47 +0.8
213,372 + MPMX19_03933 0.47 -0.3
213,372 + MPMX19_03933 0.47 +1.2
213,373 - MPMX19_03933 0.48 +0.4
213,373 - MPMX19_03933 0.48 +0.6
213,373 - MPMX19_03933 0.48 -0.8
213,373 - MPMX19_03933 0.48 -1.0
213,373 - MPMX19_03933 0.48 +1.1
213,373 - MPMX19_03933 0.48 -1.4
213,373 - MPMX19_03933 0.48 -0.1
213,373 - MPMX19_03933 0.48 +0.2
213,373 - MPMX19_03933 0.48 -0.7
213,373 - MPMX19_03933 0.48 +0.5
213,685 - MPMX19_03933 0.69 -0.1
213,972 + MPMX19_03933 0.89 -0.9
213,972 + MPMX19_03933 0.89 +0.1
213,972 + MPMX19_03933 0.89 +1.0
213,973 - MPMX19_03933 0.89 -1.6
213,973 - MPMX19_03933 0.89 -0.3
213,973 - MPMX19_03933 0.89 +0.5
214,029 + -1.2
214,029 + -0.5
214,029 + -1.0
214,029 + +1.1
214,030 - -1.2
214,030 - +0.5
214,030 - +1.5
214,030 - -0.8
214,125 + +0.2
214,126 - +0.0
214,126 - -0.1
214,126 - -0.2
214,205 + +0.2
214,205 + -1.7
214,206 - +0.6
214,520 + MPMX19_03934 0.36 +0.2
214,520 + MPMX19_03934 0.36 +0.5
214,520 + MPMX19_03934 0.36 -0.3
214,520 + MPMX19_03934 0.36 -1.4
214,521 - MPMX19_03934 0.36 +0.6
214,521 - MPMX19_03934 0.36 +0.3
214,521 - MPMX19_03934 0.36 -0.0
215,189 + +0.8
215,190 - -1.1
215,191 + -0.8
215,191 + +1.2
215,192 - -1.9
215,192 - -0.5
215,192 - +0.2
215,192 - -0.3
215,192 - -1.7
215,192 - -1.5
215,209 + -1.3
215,209 + -0.2
215,210 - +0.2
215,210 - +0.1
215,210 - -1.7
215,211 + -0.8
215,211 + -1.9
215,211 + +0.7
215,211 + -0.0
215,234 + +0.5
215,234 + +1.4
215,235 - -0.4
215,235 - -1.0
215,239 + -0.4
215,653 + MPMX19_03935 0.17 -0.2
215,653 + MPMX19_03935 0.17 -0.9
215,653 + MPMX19_03935 0.17 +0.1
215,653 + MPMX19_03935 0.17 +0.2
215,653 + MPMX19_03935 0.17 +0.9
215,653 + MPMX19_03935 0.17 +0.3
215,653 + MPMX19_03935 0.17 +0.5
215,653 + MPMX19_03935 0.17 -1.2
215,653 + MPMX19_03935 0.17 -1.3
215,653 + MPMX19_03935 0.17 -1.6
215,653 + MPMX19_03935 0.17 -1.5
215,653 + MPMX19_03935 0.17 +1.5
215,654 - MPMX19_03935 0.17 +0.5
215,654 - MPMX19_03935 0.17 -1.3
215,654 - MPMX19_03935 0.17 -2.3
215,654 - MPMX19_03935 0.17 -0.1
215,654 - MPMX19_03935 0.17 -0.4
215,654 - MPMX19_03935 0.17 +0.5
215,654 - MPMX19_03935 0.17 -1.0
215,674 + MPMX19_03935 0.19 -1.2
215,674 + MPMX19_03935 0.19 -0.4
215,675 - MPMX19_03935 0.19 -0.9
215,737 + MPMX19_03935 0.24 -0.0
215,737 + MPMX19_03935 0.24 -0.7
215,737 + MPMX19_03935 0.24 +0.2
215,738 - MPMX19_03935 0.24 +2.2
215,738 - MPMX19_03935 0.24 -0.8
215,738 - MPMX19_03935 0.24 +0.9
215,807 - MPMX19_03935 0.30 +0.4
215,835 + MPMX19_03935 0.32 -0.7
215,835 + MPMX19_03935 0.32 -1.8
215,835 + MPMX19_03935 0.32 -0.2
215,835 + MPMX19_03935 0.32 -0.9
215,835 + MPMX19_03935 0.32 -0.3
215,836 - MPMX19_03935 0.32 +0.1
215,836 - MPMX19_03935 0.32 +1.5
215,920 + MPMX19_03935 0.40 +0.6
215,920 + MPMX19_03935 0.40 +0.2
215,920 + MPMX19_03935 0.40 -1.1
215,920 + MPMX19_03935 0.40 -1.3
215,920 + MPMX19_03935 0.40 -1.0
215,921 - MPMX19_03935 0.40 -0.4
215,921 - MPMX19_03935 0.40 +0.4
215,983 + MPMX19_03935 0.45 +0.6
215,983 + MPMX19_03935 0.45 -0.2
215,983 + MPMX19_03935 0.45 -1.0
215,984 - MPMX19_03935 0.45 +0.5
215,984 - MPMX19_03935 0.45 -0.4
215,984 - MPMX19_03935 0.45 +0.6
215,984 - MPMX19_03935 0.45 -0.0
215,984 - MPMX19_03935 0.45 -0.5
215,984 - MPMX19_03935 0.45 +0.2
215,984 - MPMX19_03935 0.45 +0.1
215,984 - MPMX19_03935 0.45 +1.3

Or see this region's nucleotide sequence