Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03930

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03928 and MPMX19_03929 are separated by 28 nucleotidesMPMX19_03929 and MPMX19_03930 are separated by 97 nucleotidesMPMX19_03930 and MPMX19_03931 are separated by 6 nucleotidesMPMX19_03931 and MPMX19_03932 are separated by 402 nucleotides MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693 _03928 MPMX19_03929: MPMX19_03929 - hypothetical protein, at 208,722 to 209,450 _03929 MPMX19_03930: MPMX19_03930 - Inner membrane protein YdcO, at 209,548 to 210,771 _03930 MPMX19_03931: MPMX19_03931 - 6,7-dimethyl-8-ribityllumazine synthase, at 210,778 to 211,182 _03931 MPMX19_03932: MPMX19_03932 - hypothetical protein, at 211,585 to 212,691 _03932 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 208.691 kb on + strandat 208.691 kb on + strandat 208.691 kb on + strandat 208.864 kb on + strand, within MPMX19_03929at 208.864 kb on + strand, within MPMX19_03929at 208.864 kb on + strand, within MPMX19_03929at 208.865 kb on - strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.894 kb on + strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.895 kb on - strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.960 kb on + strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 208.961 kb on - strand, within MPMX19_03929at 209.379 kb on + strandat 209.380 kb on - strandat 209.380 kb on - strandat 209.662 kb on + strandat 209.663 kb on - strandat 209.663 kb on - strandat 209.727 kb on + strand, within MPMX19_03930at 209.727 kb on + strand, within MPMX19_03930at 209.728 kb on - strand, within MPMX19_03930at 209.728 kb on - strand, within MPMX19_03930at 209.728 kb on - strand, within MPMX19_03930at 209.728 kb on - strand, within MPMX19_03930at 209.728 kb on - strand, within MPMX19_03930at 210.103 kb on + strand, within MPMX19_03930at 210.103 kb on + strand, within MPMX19_03930at 210.103 kb on + strand, within MPMX19_03930at 210.103 kb on + strand, within MPMX19_03930at 210.103 kb on + strand, within MPMX19_03930at 210.104 kb on - strand, within MPMX19_03930at 210.104 kb on - strand, within MPMX19_03930at 210.104 kb on - strand, within MPMX19_03930at 210.104 kb on - strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.493 kb on + strand, within MPMX19_03930at 210.494 kb on - strand, within MPMX19_03930at 210.494 kb on - strand, within MPMX19_03930at 210.494 kb on - strand, within MPMX19_03930at 210.494 kb on - strand, within MPMX19_03930at 210.494 kb on - strand, within MPMX19_03930at 210.495 kb on + strand, within MPMX19_03930at 210.495 kb on + strand, within MPMX19_03930at 210.495 kb on + strand, within MPMX19_03930at 211.210 kb on - strandat 211.210 kb on - strandat 211.210 kb on - strandat 211.308 kb on + strandat 211.309 kb on - strandat 211.311 kb on - strandat 211.384 kb on + strandat 211.448 kb on - strandat 211.484 kb on - strandat 211.484 kb on - strandat 211.493 kb on + strandat 211.493 kb on + strandat 211.493 kb on + strandat 211.494 kb on - strandat 211.494 kb on - strandat 211.494 kb on - strandat 211.494 kb on - strandat 211.494 kb on - strandat 211.496 kb on + strandat 211.496 kb on + strandat 211.496 kb on + strandat 211.497 kb on - strandat 211.505 kb on + strandat 211.505 kb on + strandat 211.506 kb on - strandat 211.541 kb on + strandat 211.606 kb on + strandat 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.744 kb on + strand, within MPMX19_03932at 211.745 kb on + strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932at 211.745 kb on - strand, within MPMX19_03932

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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208,691 + +0.4
208,691 + +1.2
208,691 + +0.4
208,864 + MPMX19_03929 0.19 +0.8
208,864 + MPMX19_03929 0.19 +0.2
208,864 + MPMX19_03929 0.19 -1.4
208,865 - MPMX19_03929 0.20 -0.5
208,894 + MPMX19_03929 0.24 -0.8
208,894 + MPMX19_03929 0.24 +0.2
208,894 + MPMX19_03929 0.24 +0.9
208,895 - MPMX19_03929 0.24 +0.4
208,895 - MPMX19_03929 0.24 -1.4
208,895 - MPMX19_03929 0.24 -0.5
208,895 - MPMX19_03929 0.24 -0.1
208,960 + MPMX19_03929 0.33 -1.4
208,960 + MPMX19_03929 0.33 -0.0
208,960 + MPMX19_03929 0.33 +0.2
208,961 - MPMX19_03929 0.33 -0.5
208,961 - MPMX19_03929 0.33 +0.2
208,961 - MPMX19_03929 0.33 +0.1
208,961 - MPMX19_03929 0.33 +0.8
209,379 + -0.2
209,380 - -0.3
209,380 - +0.5
209,662 + +0.8
209,663 - +0.7
209,663 - -0.5
209,727 + MPMX19_03930 0.15 -2.1
209,727 + MPMX19_03930 0.15 -0.4
209,728 - MPMX19_03930 0.15 -1.4
209,728 - MPMX19_03930 0.15 +0.5
209,728 - MPMX19_03930 0.15 -0.2
209,728 - MPMX19_03930 0.15 +0.3
209,728 - MPMX19_03930 0.15 -2.1
210,103 + MPMX19_03930 0.45 -1.5
210,103 + MPMX19_03930 0.45 +0.1
210,103 + MPMX19_03930 0.45 +0.6
210,103 + MPMX19_03930 0.45 +0.1
210,103 + MPMX19_03930 0.45 +0.4
210,104 - MPMX19_03930 0.45 -1.7
210,104 - MPMX19_03930 0.45 +0.8
210,104 - MPMX19_03930 0.45 +0.5
210,104 - MPMX19_03930 0.45 +0.0
210,493 + MPMX19_03930 0.77 +0.9
210,493 + MPMX19_03930 0.77 -0.2
210,493 + MPMX19_03930 0.77 -0.1
210,493 + MPMX19_03930 0.77 -0.0
210,493 + MPMX19_03930 0.77 -0.5
210,493 + MPMX19_03930 0.77 +0.8
210,493 + MPMX19_03930 0.77 +0.1
210,493 + MPMX19_03930 0.77 -1.2
210,493 + MPMX19_03930 0.77 -0.8
210,494 - MPMX19_03930 0.77 -1.2
210,494 - MPMX19_03930 0.77 -0.1
210,494 - MPMX19_03930 0.77 -0.3
210,494 - MPMX19_03930 0.77 +1.1
210,494 - MPMX19_03930 0.77 -0.0
210,495 + MPMX19_03930 0.77 -0.2
210,495 + MPMX19_03930 0.77 +0.0
210,495 + MPMX19_03930 0.77 +0.7
211,210 - +0.8
211,210 - -1.5
211,210 - -0.4
211,308 + -1.4
211,309 - -0.9
211,311 - -0.4
211,384 + +0.2
211,448 - +0.2
211,484 - -3.0
211,484 - -1.2
211,493 + -1.1
211,493 + -0.1
211,493 + -0.3
211,494 - -3.1
211,494 - -0.7
211,494 - +1.3
211,494 - -0.8
211,494 - -1.2
211,496 + +0.8
211,496 + -0.4
211,496 + -0.7
211,497 - +0.6
211,505 + +3.1
211,505 + +0.4
211,506 - -0.5
211,541 + -0.7
211,606 + -0.6
211,744 + MPMX19_03932 0.14 -0.7
211,744 + MPMX19_03932 0.14 +0.6
211,744 + MPMX19_03932 0.14 -1.2
211,744 + MPMX19_03932 0.14 -0.1
211,744 + MPMX19_03932 0.14 -1.9
211,744 + MPMX19_03932 0.14 -0.8
211,744 + MPMX19_03932 0.14 -0.6
211,744 + MPMX19_03932 0.14 -0.5
211,744 + MPMX19_03932 0.14 -1.3
211,744 + MPMX19_03932 0.14 +1.1
211,744 + MPMX19_03932 0.14 +0.7
211,744 + MPMX19_03932 0.14 -0.5
211,744 + MPMX19_03932 0.14 -2.2
211,744 + MPMX19_03932 0.14 -0.4
211,744 + MPMX19_03932 0.14 -1.9
211,744 + MPMX19_03932 0.14 -0.2
211,744 + MPMX19_03932 0.14 +0.8
211,744 + MPMX19_03932 0.14 -0.2
211,744 + MPMX19_03932 0.14 +0.0
211,744 + MPMX19_03932 0.14 -0.4
211,744 + MPMX19_03932 0.14 -0.3
211,744 + MPMX19_03932 0.14 +0.8
211,744 + MPMX19_03932 0.14 -1.8
211,744 + MPMX19_03932 0.14 +0.1
211,745 + MPMX19_03932 0.14 -0.9
211,745 - MPMX19_03932 0.14 +0.6
211,745 - MPMX19_03932 0.14 -2.4
211,745 - MPMX19_03932 0.14 +1.8
211,745 - MPMX19_03932 0.14 +0.4
211,745 - MPMX19_03932 0.14 -0.3
211,745 - MPMX19_03932 0.14 -0.2
211,745 - MPMX19_03932 0.14 -0.7
211,745 - MPMX19_03932 0.14 -1.2
211,745 - MPMX19_03932 0.14 +0.3
211,745 - MPMX19_03932 0.14 -1.1
211,745 - MPMX19_03932 0.14 +1.3
211,745 - MPMX19_03932 0.14 -0.7
211,745 - MPMX19_03932 0.14 -1.9
211,745 - MPMX19_03932 0.14 -0.9
211,745 - MPMX19_03932 0.14 -0.1
211,745 - MPMX19_03932 0.14 +0.2
211,745 - MPMX19_03932 0.14 -1.1
211,745 - MPMX19_03932 0.14 +2.1
211,745 - MPMX19_03932 0.14 -0.9

Or see this region's nucleotide sequence