Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03911

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03910 and MPMX19_03911 are separated by 58 nucleotidesMPMX19_03911 and MPMX19_03912 are separated by 111 nucleotides MPMX19_03910: MPMX19_03910 - hypothetical protein, at 186,870 to 188,633 _03910 MPMX19_03911: MPMX19_03911 - Crotonobetaine/carnitine--CoA ligase, at 188,692 to 190,230 _03911 MPMX19_03912: MPMX19_03912 - 6-deoxy-6-sulfogluconolactonase, at 190,342 to 191,256 _03912 Position (kb) 188 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.704 kb on + strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.705 kb on - strand, within MPMX19_03910at 187.887 kb on + strand, within MPMX19_03910at 187.887 kb on + strand, within MPMX19_03910at 187.887 kb on + strand, within MPMX19_03910at 187.887 kb on + strand, within MPMX19_03910at 187.887 kb on + strand, within MPMX19_03910at 187.888 kb on - strand, within MPMX19_03910at 187.888 kb on - strand, within MPMX19_03910at 187.888 kb on - strand, within MPMX19_03910at 187.888 kb on - strand, within MPMX19_03910at 187.987 kb on - strand, within MPMX19_03910at 187.987 kb on - strand, within MPMX19_03910at 187.987 kb on - strand, within MPMX19_03910at 188.010 kb on + strand, within MPMX19_03910at 188.010 kb on + strand, within MPMX19_03910at 188.010 kb on + strand, within MPMX19_03910at 188.010 kb on + strand, within MPMX19_03910at 188.011 kb on - strand, within MPMX19_03910at 188.011 kb on - strand, within MPMX19_03910at 188.211 kb on + strand, within MPMX19_03910at 188.211 kb on + strand, within MPMX19_03910at 188.211 kb on + strand, within MPMX19_03910at 188.211 kb on + strand, within MPMX19_03910at 188.211 kb on + strand, within MPMX19_03910at 188.212 kb on - strand, within MPMX19_03910at 188.212 kb on - strand, within MPMX19_03910at 188.212 kb on - strand, within MPMX19_03910at 188.212 kb on - strand, within MPMX19_03910at 188.212 kb on - strand, within MPMX19_03910at 188.267 kb on + strand, within MPMX19_03910at 188.770 kb on + strandat 188.770 kb on + strandat 188.770 kb on + strandat 188.771 kb on - strandat 188.771 kb on - strandat 188.771 kb on - strandat 188.771 kb on - strandat 188.980 kb on + strand, within MPMX19_03911at 188.980 kb on + strand, within MPMX19_03911at 188.980 kb on + strand, within MPMX19_03911at 188.981 kb on - strand, within MPMX19_03911at 188.982 kb on + strand, within MPMX19_03911at 188.982 kb on + strand, within MPMX19_03911at 188.983 kb on - strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.193 kb on + strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.194 kb on - strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.325 kb on + strand, within MPMX19_03911at 189.326 kb on - strand, within MPMX19_03911at 189.326 kb on - strand, within MPMX19_03911at 189.326 kb on - strand, within MPMX19_03911at 189.326 kb on - strand, within MPMX19_03911at 189.433 kb on + strand, within MPMX19_03911at 189.433 kb on + strand, within MPMX19_03911at 189.433 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.454 kb on + strand, within MPMX19_03911at 189.455 kb on - strand, within MPMX19_03911at 189.455 kb on - strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.604 kb on + strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.605 kb on - strand, within MPMX19_03911at 189.651 kb on + strand, within MPMX19_03911at 189.762 kb on + strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 189.788 kb on - strand, within MPMX19_03911at 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.123 kb on + strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.124 kb on - strandat 190.228 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.281 kb on + strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.282 kb on - strandat 190.589 kb on + strand, within MPMX19_03912at 190.589 kb on + strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.590 kb on - strand, within MPMX19_03912at 190.691 kb on + strand, within MPMX19_03912at 190.691 kb on + strand, within MPMX19_03912at 190.692 kb on - strand, within MPMX19_03912at 190.740 kb on - strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.829 kb on + strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.830 kb on - strand, within MPMX19_03912at 190.836 kb on - strand, within MPMX19_03912

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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187,704 + MPMX19_03910 0.47 -1.5
187,704 + MPMX19_03910 0.47 -0.6
187,704 + MPMX19_03910 0.47 +0.7
187,704 + MPMX19_03910 0.47 -1.8
187,704 + MPMX19_03910 0.47 -1.8
187,704 + MPMX19_03910 0.47 -0.2
187,704 + MPMX19_03910 0.47 +1.2
187,704 + MPMX19_03910 0.47 -1.7
187,704 + MPMX19_03910 0.47 +1.2
187,704 + MPMX19_03910 0.47 -0.0
187,705 - MPMX19_03910 0.47 +0.5
187,705 - MPMX19_03910 0.47 -0.1
187,705 - MPMX19_03910 0.47 +0.8
187,705 - MPMX19_03910 0.47 +1.1
187,705 - MPMX19_03910 0.47 -1.0
187,705 - MPMX19_03910 0.47 -0.5
187,705 - MPMX19_03910 0.47 +1.0
187,887 + MPMX19_03910 0.58 -1.0
187,887 + MPMX19_03910 0.58 -0.1
187,887 + MPMX19_03910 0.58 +0.1
187,887 + MPMX19_03910 0.58 -0.4
187,887 + MPMX19_03910 0.58 +0.1
187,888 - MPMX19_03910 0.58 -0.4
187,888 - MPMX19_03910 0.58 -0.7
187,888 - MPMX19_03910 0.58 -2.7
187,888 - MPMX19_03910 0.58 +0.3
187,987 - MPMX19_03910 0.63 +0.4
187,987 - MPMX19_03910 0.63 +0.1
187,987 - MPMX19_03910 0.63 +1.2
188,010 + MPMX19_03910 0.65 -0.3
188,010 + MPMX19_03910 0.65 +0.5
188,010 + MPMX19_03910 0.65 +0.8
188,010 + MPMX19_03910 0.65 +0.6
188,011 - MPMX19_03910 0.65 +1.8
188,011 - MPMX19_03910 0.65 +0.2
188,211 + MPMX19_03910 0.76 -0.5
188,211 + MPMX19_03910 0.76 -0.5
188,211 + MPMX19_03910 0.76 +0.8
188,211 + MPMX19_03910 0.76 -2.0
188,211 + MPMX19_03910 0.76 +0.3
188,212 - MPMX19_03910 0.76 +1.2
188,212 - MPMX19_03910 0.76 +0.8
188,212 - MPMX19_03910 0.76 -0.8
188,212 - MPMX19_03910 0.76 -0.6
188,212 - MPMX19_03910 0.76 +0.6
188,267 + MPMX19_03910 0.79 +0.2
188,770 + -0.8
188,770 + -1.4
188,770 + +0.6
188,771 - -1.3
188,771 - -0.7
188,771 - +0.5
188,771 - +0.5
188,980 + MPMX19_03911 0.19 -1.8
188,980 + MPMX19_03911 0.19 -0.8
188,980 + MPMX19_03911 0.19 -1.2
188,981 - MPMX19_03911 0.19 -1.8
188,982 + MPMX19_03911 0.19 -0.2
188,982 + MPMX19_03911 0.19 -0.0
188,983 - MPMX19_03911 0.19 -1.7
189,193 + MPMX19_03911 0.33 +1.0
189,193 + MPMX19_03911 0.33 -2.1
189,193 + MPMX19_03911 0.33 +0.5
189,193 + MPMX19_03911 0.33 -0.9
189,193 + MPMX19_03911 0.33 -0.5
189,193 + MPMX19_03911 0.33 -0.5
189,193 + MPMX19_03911 0.33 -0.6
189,193 + MPMX19_03911 0.33 -2.1
189,193 + MPMX19_03911 0.33 -0.3
189,193 + MPMX19_03911 0.33 -0.0
189,193 + MPMX19_03911 0.33 +0.6
189,193 + MPMX19_03911 0.33 -1.2
189,193 + MPMX19_03911 0.33 -2.0
189,193 + MPMX19_03911 0.33 -2.5
189,194 - MPMX19_03911 0.33 +0.7
189,194 - MPMX19_03911 0.33 -0.2
189,194 - MPMX19_03911 0.33 +0.2
189,194 - MPMX19_03911 0.33 -1.1
189,194 - MPMX19_03911 0.33 +1.4
189,194 - MPMX19_03911 0.33 +0.7
189,194 - MPMX19_03911 0.33 -0.3
189,194 - MPMX19_03911 0.33 +0.7
189,194 - MPMX19_03911 0.33 +0.4
189,194 - MPMX19_03911 0.33 -2.1
189,194 - MPMX19_03911 0.33 -1.8
189,194 - MPMX19_03911 0.33 +0.4
189,194 - MPMX19_03911 0.33 -1.0
189,325 + MPMX19_03911 0.41 -0.5
189,325 + MPMX19_03911 0.41 -1.5
189,325 + MPMX19_03911 0.41 +0.4
189,325 + MPMX19_03911 0.41 -0.8
189,325 + MPMX19_03911 0.41 +0.2
189,325 + MPMX19_03911 0.41 +1.4
189,325 + MPMX19_03911 0.41 +0.2
189,325 + MPMX19_03911 0.41 -0.9
189,326 - MPMX19_03911 0.41 -0.4
189,326 - MPMX19_03911 0.41 -1.2
189,326 - MPMX19_03911 0.41 -0.6
189,326 - MPMX19_03911 0.41 -0.6
189,433 + MPMX19_03911 0.48 -1.2
189,433 + MPMX19_03911 0.48 +0.2
189,433 + MPMX19_03911 0.48 -0.8
189,454 + MPMX19_03911 0.50 -0.7
189,454 + MPMX19_03911 0.50 -0.2
189,454 + MPMX19_03911 0.50 -0.2
189,455 - MPMX19_03911 0.50 -0.1
189,455 - MPMX19_03911 0.50 -1.3
189,604 + MPMX19_03911 0.59 -1.0
189,604 + MPMX19_03911 0.59 +0.8
189,604 + MPMX19_03911 0.59 -2.4
189,604 + MPMX19_03911 0.59 +0.2
189,604 + MPMX19_03911 0.59 -0.8
189,605 - MPMX19_03911 0.59 -0.5
189,605 - MPMX19_03911 0.59 -0.5
189,605 - MPMX19_03911 0.59 -0.4
189,651 + MPMX19_03911 0.62 -1.0
189,762 + MPMX19_03911 0.70 +0.9
189,788 - MPMX19_03911 0.71 -2.8
189,788 - MPMX19_03911 0.71 -1.4
189,788 - MPMX19_03911 0.71 -0.1
189,788 - MPMX19_03911 0.71 -1.7
189,788 - MPMX19_03911 0.71 +0.2
190,123 + +0.1
190,123 + +0.5
190,123 + +0.6
190,123 + -0.8
190,123 + -0.2
190,123 + +0.4
190,123 + -0.2
190,123 + -0.6
190,123 + -0.1
190,124 - -1.4
190,124 - +0.5
190,124 - -1.3
190,124 - -0.0
190,124 - -2.5
190,124 - -0.2
190,124 - -1.1
190,228 + +0.3
190,281 + -1.4
190,281 + -1.2
190,281 + -0.6
190,281 + -0.6
190,281 + -0.4
190,281 + +0.5
190,281 + -0.4
190,281 + -0.8
190,281 + +0.2
190,282 - -0.6
190,282 - -0.2
190,282 - -0.7
190,282 - -0.0
190,282 - +1.4
190,282 - +0.5
190,282 - +0.3
190,589 + MPMX19_03912 0.27 -1.5
190,589 + MPMX19_03912 0.27 +1.1
190,590 - MPMX19_03912 0.27 -1.0
190,590 - MPMX19_03912 0.27 -0.3
190,590 - MPMX19_03912 0.27 +0.2
190,590 - MPMX19_03912 0.27 +0.2
190,590 - MPMX19_03912 0.27 +0.5
190,691 + MPMX19_03912 0.38 -0.5
190,691 + MPMX19_03912 0.38 -0.0
190,692 - MPMX19_03912 0.38 +0.3
190,740 - MPMX19_03912 0.43 -0.3
190,829 + MPMX19_03912 0.53 +0.4
190,829 + MPMX19_03912 0.53 -0.6
190,829 + MPMX19_03912 0.53 -1.0
190,829 + MPMX19_03912 0.53 -0.3
190,830 - MPMX19_03912 0.53 +0.6
190,830 - MPMX19_03912 0.53 +0.0
190,830 - MPMX19_03912 0.53 +0.2
190,836 - MPMX19_03912 0.54 +0.1

Or see this region's nucleotide sequence