Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03885

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03884 and MPMX19_03885 overlap by 1 nucleotidesMPMX19_03885 and MPMX19_03886 are separated by 601 nucleotides MPMX19_03884: MPMX19_03884 - hypothetical protein, at 141,122 to 142,891 _03884 MPMX19_03885: MPMX19_03885 - Lipopolysaccharide assembly protein B, at 142,891 to 144,777 _03885 MPMX19_03886: MPMX19_03886 - hypothetical protein, at 145,379 to 160,201 _03886 Position (kb) 142 143 144 145Strain fitness (log2 ratio) -2 -1 0 1 2 3at 142.251 kb on - strand, within MPMX19_03884at 142.532 kb on + strand, within MPMX19_03884at 142.532 kb on + strand, within MPMX19_03884at 142.533 kb on - strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.635 kb on - strand, within MPMX19_03884at 142.635 kb on - strand, within MPMX19_03884at 143.267 kb on + strand, within MPMX19_03885at 143.267 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.546 kb on - strand, within MPMX19_03885at 143.692 kb on + strand, within MPMX19_03885at 143.692 kb on + strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 144.034 kb on + strand, within MPMX19_03885at 144.035 kb on - strand, within MPMX19_03885at 144.035 kb on - strand, within MPMX19_03885at 144.309 kb on + strand, within MPMX19_03885at 144.309 kb on + strand, within MPMX19_03885at 144.418 kb on + strand, within MPMX19_03885at 144.419 kb on - strand, within MPMX19_03885at 144.434 kb on + strand, within MPMX19_03885at 144.434 kb on + strand, within MPMX19_03885at 144.434 kb on + strand, within MPMX19_03885at 144.435 kb on - strand, within MPMX19_03885at 144.435 kb on - strand, within MPMX19_03885at 144.435 kb on - strand, within MPMX19_03885at 144.435 kb on - strand, within MPMX19_03885at 144.455 kb on - strand, within MPMX19_03885at 144.455 kb on - strand, within MPMX19_03885at 144.455 kb on - strand, within MPMX19_03885at 144.455 kb on - strand, within MPMX19_03885at 144.455 kb on - strand, within MPMX19_03885at 144.601 kb on + strandat 144.601 kb on + strandat 144.601 kb on + strandat 144.601 kb on + strandat 144.602 kb on - strandat 144.602 kb on - strandat 144.973 kb on + strandat 144.973 kb on + strandat 145.028 kb on + strandat 145.191 kb on - strandat 145.198 kb on + strandat 145.199 kb on - strandat 145.264 kb on + strandat 145.264 kb on + strandat 145.376 kb on + strandat 145.376 kb on + strandat 145.376 kb on + strandat 145.376 kb on + strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.377 kb on - strandat 145.390 kb on + strandat 145.390 kb on + strandat 145.390 kb on + strandat 145.390 kb on + strandat 145.391 kb on - strandat 145.391 kb on - strandat 145.391 kb on - strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.513 kb on + strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.514 kb on - strandat 145.658 kb on + strandat 145.658 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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142,251 - MPMX19_03884 0.64 -0.0
142,532 + MPMX19_03884 0.80 -1.5
142,532 + MPMX19_03884 0.80 +1.4
142,533 - MPMX19_03884 0.80 -0.1
142,625 + MPMX19_03884 0.85 +0.5
142,625 + MPMX19_03884 0.85 -0.2
142,625 + MPMX19_03884 0.85 +0.9
142,625 + MPMX19_03884 0.85 -2.0
142,625 + MPMX19_03884 0.85 +0.8
142,625 + MPMX19_03884 0.85 -1.7
142,626 - MPMX19_03884 0.85 -0.2
142,626 - MPMX19_03884 0.85 -1.1
142,626 - MPMX19_03884 0.85 -2.3
142,635 - MPMX19_03884 0.85 +0.7
142,635 - MPMX19_03884 0.85 -1.2
143,267 + MPMX19_03885 0.20 -0.7
143,267 + MPMX19_03885 0.20 +0.9
143,272 + MPMX19_03885 0.20 -0.5
143,272 + MPMX19_03885 0.20 +0.3
143,272 + MPMX19_03885 0.20 -0.7
143,272 + MPMX19_03885 0.20 -1.0
143,272 + MPMX19_03885 0.20 +1.8
143,272 + MPMX19_03885 0.20 -0.8
143,272 + MPMX19_03885 0.20 +0.5
143,272 + MPMX19_03885 0.20 +0.5
143,272 + MPMX19_03885 0.20 -1.9
143,273 - MPMX19_03885 0.20 +1.4
143,273 - MPMX19_03885 0.20 +0.2
143,273 - MPMX19_03885 0.20 +1.2
143,273 - MPMX19_03885 0.20 -0.4
143,374 + MPMX19_03885 0.26 -0.5
143,374 + MPMX19_03885 0.26 -0.3
143,374 + MPMX19_03885 0.26 -0.2
143,374 + MPMX19_03885 0.26 +1.0
143,374 + MPMX19_03885 0.26 -1.0
143,374 + MPMX19_03885 0.26 -1.8
143,374 + MPMX19_03885 0.26 -0.1
143,374 + MPMX19_03885 0.26 -2.4
143,374 + MPMX19_03885 0.26 -1.4
143,374 + MPMX19_03885 0.26 -0.4
143,374 + MPMX19_03885 0.26 -0.4
143,374 + MPMX19_03885 0.26 -0.6
143,374 + MPMX19_03885 0.26 -0.7
143,374 + MPMX19_03885 0.26 +1.8
143,375 - MPMX19_03885 0.26 +1.2
143,375 - MPMX19_03885 0.26 +1.2
143,375 - MPMX19_03885 0.26 -0.8
143,375 - MPMX19_03885 0.26 +0.3
143,375 - MPMX19_03885 0.26 -0.8
143,375 - MPMX19_03885 0.26 -1.3
143,375 - MPMX19_03885 0.26 +0.0
143,375 - MPMX19_03885 0.26 -1.7
143,375 - MPMX19_03885 0.26 -1.4
143,546 - MPMX19_03885 0.35 -2.0
143,692 + MPMX19_03885 0.42 -1.7
143,692 + MPMX19_03885 0.42 -1.8
143,693 - MPMX19_03885 0.43 +0.2
143,693 - MPMX19_03885 0.43 +0.4
143,693 - MPMX19_03885 0.43 -0.5
143,693 - MPMX19_03885 0.43 -1.0
143,693 - MPMX19_03885 0.43 -0.5
143,693 - MPMX19_03885 0.43 -0.1
143,693 - MPMX19_03885 0.43 +0.1
143,785 + MPMX19_03885 0.47 -0.0
143,785 + MPMX19_03885 0.47 -0.6
143,785 + MPMX19_03885 0.47 -1.7
143,786 - MPMX19_03885 0.47 +0.8
143,786 - MPMX19_03885 0.47 +0.8
143,786 - MPMX19_03885 0.47 +0.2
143,786 - MPMX19_03885 0.47 -2.3
144,034 + MPMX19_03885 0.61 -0.9
144,035 - MPMX19_03885 0.61 +0.3
144,035 - MPMX19_03885 0.61 +0.8
144,309 + MPMX19_03885 0.75 -1.2
144,309 + MPMX19_03885 0.75 -1.7
144,418 + MPMX19_03885 0.81 -0.2
144,419 - MPMX19_03885 0.81 -0.3
144,434 + MPMX19_03885 0.82 -0.1
144,434 + MPMX19_03885 0.82 -0.9
144,434 + MPMX19_03885 0.82 -0.5
144,435 - MPMX19_03885 0.82 -0.5
144,435 - MPMX19_03885 0.82 +0.6
144,435 - MPMX19_03885 0.82 -1.3
144,435 - MPMX19_03885 0.82 -1.5
144,455 - MPMX19_03885 0.83 -1.0
144,455 - MPMX19_03885 0.83 -0.6
144,455 - MPMX19_03885 0.83 -0.2
144,455 - MPMX19_03885 0.83 -1.9
144,455 - MPMX19_03885 0.83 -0.1
144,601 + +1.2
144,601 + -1.1
144,601 + -0.2
144,601 + -0.7
144,602 - -0.5
144,602 - -1.6
144,973 + -1.8
144,973 + -1.5
145,028 + +1.1
145,191 - +0.9
145,198 + -1.6
145,199 - -1.7
145,264 + -0.3
145,264 + -0.1
145,376 + +0.4
145,376 + -0.1
145,376 + -1.8
145,376 + +0.2
145,377 - -0.5
145,377 - -1.9
145,377 - -2.4
145,377 - -1.8
145,377 - +0.5
145,377 - -0.2
145,377 - -1.2
145,377 - -0.2
145,390 + +1.6
145,390 + +0.1
145,390 + -0.7
145,390 + -1.1
145,391 - -0.2
145,391 - -0.7
145,391 - +0.8
145,513 + +0.1
145,513 + +1.8
145,513 + +0.3
145,513 + -0.0
145,513 + +0.6
145,513 + -1.8
145,513 + -0.8
145,513 + -0.8
145,513 + -0.9
145,514 - +0.1
145,514 - -1.2
145,514 - -0.4
145,514 - -1.2
145,514 - -1.2
145,514 - -1.5
145,514 - +1.2
145,514 - +0.4
145,514 - -0.7
145,514 - -0.8
145,514 - -0.5
145,514 - +2.8
145,514 - -2.1
145,658 + +1.4
145,658 + -0.0

Or see this region's nucleotide sequence