Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03858 and MPMX19_03859 are separated by 73 nucleotides MPMX19_03859 and MPMX19_03860 are separated by 47 nucleotides
MPMX19_03858: MPMX19_03858 - Multidrug resistance protein MdtK, at 104,474 to 105,898
_03858
MPMX19_03859: MPMX19_03859 - hypothetical protein, at 105,972 to 106,550
_03859
MPMX19_03860: MPMX19_03860 - hypothetical protein, at 106,598 to 107,230
_03860
Position (kb) 105
106
107 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 105.137 kb on + strand, within MPMX19_03858 at 105.137 kb on + strand, within MPMX19_03858 at 105.137 kb on + strand, within MPMX19_03858 at 105.137 kb on + strand, within MPMX19_03858 at 105.137 kb on + strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.138 kb on - strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.140 kb on + strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.141 kb on - strand, within MPMX19_03858 at 105.171 kb on - strand, within MPMX19_03858 at 105.171 kb on - strand, within MPMX19_03858 at 105.171 kb on - strand, within MPMX19_03858 at 105.171 kb on - strand, within MPMX19_03858 at 105.258 kb on + strand, within MPMX19_03858 at 105.371 kb on + strand, within MPMX19_03858 at 105.371 kb on + strand, within MPMX19_03858 at 105.371 kb on + strand, within MPMX19_03858 at 105.371 kb on + strand, within MPMX19_03858 at 105.371 kb on + strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.372 kb on - strand, within MPMX19_03858 at 105.596 kb on + strand, within MPMX19_03858 at 105.596 kb on + strand, within MPMX19_03858 at 105.597 kb on - strand, within MPMX19_03858 at 105.597 kb on - strand, within MPMX19_03858 at 105.597 kb on - strand, within MPMX19_03858 at 105.597 kb on - strand, within MPMX19_03858 at 105.597 kb on - strand, within MPMX19_03858 at 105.620 kb on + strand, within MPMX19_03858 at 105.621 kb on - strand, within MPMX19_03858 at 105.621 kb on - strand, within MPMX19_03858 at 105.621 kb on - strand, within MPMX19_03858 at 105.621 kb on - strand, within MPMX19_03858 at 105.650 kb on + strand, within MPMX19_03858 at 105.650 kb on + strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.651 kb on - strand, within MPMX19_03858 at 105.784 kb on + strand at 105.784 kb on + strand at 105.785 kb on - strand at 105.807 kb on - strand at 105.874 kb on - strand at 105.896 kb on + strand at 105.896 kb on + strand at 105.896 kb on + strand at 105.897 kb on - strand at 105.897 kb on - strand at 105.929 kb on + strand at 105.929 kb on + strand at 105.929 kb on + strand at 105.929 kb on + strand at 105.929 kb on + strand at 105.929 kb on + strand at 105.930 kb on - strand at 105.930 kb on - strand at 105.930 kb on - strand at 105.937 kb on - strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 105.968 kb on + strand at 106.113 kb on + strand, within MPMX19_03859 at 106.114 kb on - strand, within MPMX19_03859 at 106.114 kb on - strand, within MPMX19_03859 at 106.114 kb on - strand, within MPMX19_03859 at 106.114 kb on - strand, within MPMX19_03859 at 106.115 kb on + strand, within MPMX19_03859 at 106.115 kb on + strand, within MPMX19_03859 at 106.179 kb on + strand, within MPMX19_03859 at 106.179 kb on + strand, within MPMX19_03859 at 106.180 kb on - strand, within MPMX19_03859 at 106.245 kb on + strand, within MPMX19_03859 at 106.246 kb on - strand, within MPMX19_03859 at 106.246 kb on - strand, within MPMX19_03859 at 106.535 kb on + strand at 106.670 kb on + strand, within MPMX19_03860 at 106.670 kb on + strand, within MPMX19_03860 at 106.671 kb on - strand, within MPMX19_03860 at 106.671 kb on - strand, within MPMX19_03860 at 106.671 kb on - strand, within MPMX19_03860 at 106.671 kb on - strand, within MPMX19_03860 at 106.693 kb on + strand, within MPMX19_03860 at 106.693 kb on + strand, within MPMX19_03860 at 106.693 kb on + strand, within MPMX19_03860 at 106.693 kb on + strand, within MPMX19_03860 at 106.730 kb on + strand, within MPMX19_03860 at 106.736 kb on + strand, within MPMX19_03860 at 106.736 kb on + strand, within MPMX19_03860 at 106.736 kb on + strand, within MPMX19_03860 at 106.737 kb on - strand, within MPMX19_03860 at 106.737 kb on - strand, within MPMX19_03860 at 106.737 kb on - strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.769 kb on + strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.770 kb on - strand, within MPMX19_03860 at 106.845 kb on + strand, within MPMX19_03860 at 106.845 kb on + strand, within MPMX19_03860 at 106.845 kb on + strand, within MPMX19_03860 at 106.845 kb on + strand, within MPMX19_03860 at 106.868 kb on + strand, within MPMX19_03860 at 106.869 kb on - strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.881 kb on + strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.882 kb on - strand, within MPMX19_03860 at 106.883 kb on - strand, within MPMX19_03860 at 106.962 kb on - strand, within MPMX19_03860 at 107.004 kb on + strand, within MPMX19_03860 at 107.004 kb on + strand, within MPMX19_03860 at 107.004 kb on + strand, within MPMX19_03860 at 107.004 kb on + strand, within MPMX19_03860 at 107.004 kb on + strand, within MPMX19_03860 at 107.005 kb on - strand, within MPMX19_03860 at 107.034 kb on + strand, within MPMX19_03860 at 107.034 kb on + strand, within MPMX19_03860 at 107.035 kb on - strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.127 kb on + strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.128 kb on - strand, within MPMX19_03860 at 107.129 kb on + strand, within MPMX19_03860 at 107.129 kb on + strand, within MPMX19_03860 at 107.129 kb on + strand, within MPMX19_03860 at 107.129 kb on + strand, within MPMX19_03860 at 107.130 kb on - strand, within MPMX19_03860 at 107.130 kb on - strand, within MPMX19_03860 at 107.130 kb on - strand, within MPMX19_03860 at 107.207 kb on + strand at 107.208 kb on - strand at 107.326 kb on + strand at 107.327 kb on - strand at 107.327 kb on - strand at 107.327 kb on - strand at 107.327 kb on - strand at 107.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 105,137 + MPMX19_03858 0.47 +0.6 105,137 + MPMX19_03858 0.47 -0.1 105,137 + MPMX19_03858 0.47 -1.4 105,137 + MPMX19_03858 0.47 -0.9 105,137 + MPMX19_03858 0.47 +0.8 105,138 - MPMX19_03858 0.47 -0.2 105,138 - MPMX19_03858 0.47 +0.3 105,138 - MPMX19_03858 0.47 -0.3 105,138 - MPMX19_03858 0.47 -0.1 105,138 - MPMX19_03858 0.47 +1.1 105,138 - MPMX19_03858 0.47 -1.1 105,140 + MPMX19_03858 0.47 +1.4 105,140 + MPMX19_03858 0.47 +0.1 105,140 + MPMX19_03858 0.47 -1.0 105,140 + MPMX19_03858 0.47 -1.4 105,140 + MPMX19_03858 0.47 -1.9 105,140 + MPMX19_03858 0.47 +0.4 105,140 + MPMX19_03858 0.47 -0.5 105,140 + MPMX19_03858 0.47 -2.6 105,141 - MPMX19_03858 0.47 -0.4 105,141 - MPMX19_03858 0.47 -1.7 105,141 - MPMX19_03858 0.47 -2.1 105,141 - MPMX19_03858 0.47 -0.1 105,141 - MPMX19_03858 0.47 -1.2 105,141 - MPMX19_03858 0.47 +0.1 105,141 - MPMX19_03858 0.47 +0.2 105,171 - MPMX19_03858 0.49 +1.0 105,171 - MPMX19_03858 0.49 -0.2 105,171 - MPMX19_03858 0.49 -0.4 105,171 - MPMX19_03858 0.49 -0.4 105,258 + MPMX19_03858 0.55 +0.1 105,371 + MPMX19_03858 0.63 +0.1 105,371 + MPMX19_03858 0.63 +0.4 105,371 + MPMX19_03858 0.63 -1.0 105,371 + MPMX19_03858 0.63 -0.8 105,371 + MPMX19_03858 0.63 +0.5 105,372 - MPMX19_03858 0.63 -0.8 105,372 - MPMX19_03858 0.63 -0.5 105,372 - MPMX19_03858 0.63 -1.2 105,372 - MPMX19_03858 0.63 +0.1 105,372 - MPMX19_03858 0.63 -0.9 105,372 - MPMX19_03858 0.63 +0.6 105,596 + MPMX19_03858 0.79 +1.2 105,596 + MPMX19_03858 0.79 -0.1 105,597 - MPMX19_03858 0.79 -0.1 105,597 - MPMX19_03858 0.79 -0.4 105,597 - MPMX19_03858 0.79 -1.2 105,597 - MPMX19_03858 0.79 -0.3 105,597 - MPMX19_03858 0.79 +0.3 105,620 + MPMX19_03858 0.80 -1.0 105,621 - MPMX19_03858 0.80 +0.3 105,621 - MPMX19_03858 0.80 -0.9 105,621 - MPMX19_03858 0.80 -0.9 105,621 - MPMX19_03858 0.80 -1.1 105,650 + MPMX19_03858 0.83 -0.4 105,650 + MPMX19_03858 0.83 -2.9 105,651 - MPMX19_03858 0.83 +1.4 105,651 - MPMX19_03858 0.83 -0.6 105,651 - MPMX19_03858 0.83 -0.2 105,651 - MPMX19_03858 0.83 +0.2 105,651 - MPMX19_03858 0.83 +2.5 105,651 - MPMX19_03858 0.83 +0.8 105,784 + +0.4 105,784 + -0.6 105,785 - -1.0 105,807 - +0.9 105,874 - +0.9 105,896 + -0.3 105,896 + +0.7 105,896 + -1.0 105,897 - -1.1 105,897 - +0.8 105,929 + +0.9 105,929 + +0.1 105,929 + -0.4 105,929 + -0.9 105,929 + -0.0 105,929 + +0.2 105,930 - -1.2 105,930 - -0.9 105,930 - -0.5 105,937 - -1.8 105,968 + +0.2 105,968 + -0.4 105,968 + +0.4 105,968 + -1.8 105,968 + -0.8 105,968 + -0.4 105,968 + +0.7 105,968 + +0.1 105,968 + -2.5 106,113 + MPMX19_03859 0.24 -1.5 106,114 - MPMX19_03859 0.25 -0.1 106,114 - MPMX19_03859 0.25 -0.7 106,114 - MPMX19_03859 0.25 -0.5 106,114 - MPMX19_03859 0.25 +0.4 106,115 + MPMX19_03859 0.25 -1.0 106,115 + MPMX19_03859 0.25 -0.4 106,179 + MPMX19_03859 0.36 -0.5 106,179 + MPMX19_03859 0.36 -1.0 106,180 - MPMX19_03859 0.36 -1.0 106,245 + MPMX19_03859 0.47 -0.7 106,246 - MPMX19_03859 0.47 -1.9 106,246 - MPMX19_03859 0.47 -0.8 106,535 + -1.6 106,670 + MPMX19_03860 0.11 -1.4 106,670 + MPMX19_03860 0.11 -0.1 106,671 - MPMX19_03860 0.12 +0.1 106,671 - MPMX19_03860 0.12 +0.2 106,671 - MPMX19_03860 0.12 -0.7 106,671 - MPMX19_03860 0.12 +0.2 106,693 + MPMX19_03860 0.15 -1.5 106,693 + MPMX19_03860 0.15 +0.0 106,693 + MPMX19_03860 0.15 +0.2 106,693 + MPMX19_03860 0.15 -0.1 106,730 + MPMX19_03860 0.21 +1.3 106,736 + MPMX19_03860 0.22 -1.3 106,736 + MPMX19_03860 0.22 +0.1 106,736 + MPMX19_03860 0.22 +1.4 106,737 - MPMX19_03860 0.22 -0.4 106,737 - MPMX19_03860 0.22 +0.8 106,737 - MPMX19_03860 0.22 -0.8 106,769 + MPMX19_03860 0.27 -0.5 106,769 + MPMX19_03860 0.27 +0.9 106,769 + MPMX19_03860 0.27 +0.4 106,769 + MPMX19_03860 0.27 -0.4 106,769 + MPMX19_03860 0.27 -1.2 106,769 + MPMX19_03860 0.27 -0.5 106,769 + MPMX19_03860 0.27 +0.9 106,769 + MPMX19_03860 0.27 +0.6 106,769 + MPMX19_03860 0.27 -1.7 106,769 + MPMX19_03860 0.27 -0.8 106,769 + MPMX19_03860 0.27 -0.3 106,770 - MPMX19_03860 0.27 -0.2 106,770 - MPMX19_03860 0.27 -0.1 106,770 - MPMX19_03860 0.27 -1.1 106,770 - MPMX19_03860 0.27 -0.1 106,770 - MPMX19_03860 0.27 -0.5 106,770 - MPMX19_03860 0.27 +0.6 106,770 - MPMX19_03860 0.27 +0.1 106,770 - MPMX19_03860 0.27 -0.2 106,770 - MPMX19_03860 0.27 -0.2 106,770 - MPMX19_03860 0.27 -1.4 106,770 - MPMX19_03860 0.27 +0.5 106,770 - MPMX19_03860 0.27 +2.1 106,770 - MPMX19_03860 0.27 +0.6 106,770 - MPMX19_03860 0.27 -0.6 106,770 - MPMX19_03860 0.27 -0.7 106,770 - MPMX19_03860 0.27 +0.5 106,770 - MPMX19_03860 0.27 -0.2 106,770 - MPMX19_03860 0.27 +0.4 106,770 - MPMX19_03860 0.27 -0.5 106,770 - MPMX19_03860 0.27 -0.8 106,770 - MPMX19_03860 0.27 -1.1 106,770 - MPMX19_03860 0.27 +1.5 106,845 + MPMX19_03860 0.39 -1.4 106,845 + MPMX19_03860 0.39 +0.3 106,845 + MPMX19_03860 0.39 -1.1 106,845 + MPMX19_03860 0.39 -0.5 106,868 + MPMX19_03860 0.43 -0.4 106,869 - MPMX19_03860 0.43 -0.9 106,881 + MPMX19_03860 0.45 -1.0 106,881 + MPMX19_03860 0.45 +0.2 106,881 + MPMX19_03860 0.45 -0.0 106,881 + MPMX19_03860 0.45 -0.2 106,881 + MPMX19_03860 0.45 -1.2 106,881 + MPMX19_03860 0.45 -1.5 106,881 + MPMX19_03860 0.45 +0.6 106,882 - MPMX19_03860 0.45 -0.7 106,882 - MPMX19_03860 0.45 -1.6 106,882 - MPMX19_03860 0.45 -2.1 106,882 - MPMX19_03860 0.45 -1.6 106,882 - MPMX19_03860 0.45 -1.0 106,882 - MPMX19_03860 0.45 +1.1 106,882 - MPMX19_03860 0.45 -1.0 106,882 - MPMX19_03860 0.45 -0.1 106,883 - MPMX19_03860 0.45 -1.4 106,962 - MPMX19_03860 0.58 -1.5 107,004 + MPMX19_03860 0.64 -0.2 107,004 + MPMX19_03860 0.64 +0.3 107,004 + MPMX19_03860 0.64 +0.0 107,004 + MPMX19_03860 0.64 -0.9 107,004 + MPMX19_03860 0.64 -0.9 107,005 - MPMX19_03860 0.64 -1.0 107,034 + MPMX19_03860 0.69 -0.1 107,034 + MPMX19_03860 0.69 -0.9 107,035 - MPMX19_03860 0.69 -0.1 107,127 + MPMX19_03860 0.84 -0.8 107,127 + MPMX19_03860 0.84 +1.1 107,127 + MPMX19_03860 0.84 +0.8 107,127 + MPMX19_03860 0.84 -1.2 107,127 + MPMX19_03860 0.84 +0.8 107,127 + MPMX19_03860 0.84 -0.5 107,127 + MPMX19_03860 0.84 -0.0 107,127 + MPMX19_03860 0.84 +1.7 107,127 + MPMX19_03860 0.84 -1.8 107,127 + MPMX19_03860 0.84 +2.4 107,128 - MPMX19_03860 0.84 -1.5 107,128 - MPMX19_03860 0.84 -1.7 107,128 - MPMX19_03860 0.84 -0.9 107,128 - MPMX19_03860 0.84 +0.8 107,128 - MPMX19_03860 0.84 -0.3 107,128 - MPMX19_03860 0.84 +0.6 107,128 - MPMX19_03860 0.84 -1.5 107,128 - MPMX19_03860 0.84 -0.2 107,128 - MPMX19_03860 0.84 -1.5 107,129 + MPMX19_03860 0.84 -0.5 107,129 + MPMX19_03860 0.84 -0.0 107,129 + MPMX19_03860 0.84 +0.4 107,129 + MPMX19_03860 0.84 +0.1 107,130 - MPMX19_03860 0.84 +0.3 107,130 - MPMX19_03860 0.84 -1.2 107,130 - MPMX19_03860 0.84 -1.2 107,207 + -0.4 107,208 - -0.4 107,326 + +0.2 107,327 - -1.0 107,327 - +0.7 107,327 - +0.8 107,327 - -1.5 107,327 - -0.1
Or see this region's nucleotide sequence