Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03824 and MPMX19_03825 are separated by 292 nucleotides MPMX19_03825 and MPMX19_03826 are separated by 26 nucleotides MPMX19_03826 and MPMX19_03827 are separated by 40 nucleotides
MPMX19_03824: MPMX19_03824 - hypothetical protein, at 62,088 to 62,837
_03824
MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074
_03825
MPMX19_03826: MPMX19_03826 - putative methyltransferase, at 64,101 to 64,862
_03826
MPMX19_03827: MPMX19_03827 - hypothetical protein, at 64,903 to 66,408
_03827
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.225 kb on - strand, within MPMX19_03824 at 62.225 kb on - strand, within MPMX19_03824 at 62.225 kb on - strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.255 kb on + strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.256 kb on - strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.257 kb on + strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.258 kb on - strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.323 kb on + strand, within MPMX19_03824 at 62.324 kb on - strand, within MPMX19_03824 at 62.388 kb on - strand, within MPMX19_03824 at 62.417 kb on + strand, within MPMX19_03824 at 62.418 kb on - strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.419 kb on + strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.420 kb on - strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.526 kb on + strand, within MPMX19_03824 at 62.527 kb on - strand, within MPMX19_03824 at 62.527 kb on - strand, within MPMX19_03824 at 62.529 kb on + strand, within MPMX19_03824 at 62.529 kb on + strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.530 kb on - strand, within MPMX19_03824 at 62.873 kb on - strand at 62.898 kb on - strand at 62.898 kb on - strand at 62.949 kb on + strand at 62.949 kb on + strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.131 kb on + strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.344 kb on + strand, within MPMX19_03825 at 63.345 kb on - strand, within MPMX19_03825 at 64.114 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.813 kb on + strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.814 kb on - strand at 64.834 kb on + strand at 64.862 kb on + strand at 64.862 kb on + strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.863 kb on - strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.904 kb on + strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand at 64.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 62,225 - MPMX19_03824 0.18 -2.2 62,225 - MPMX19_03824 0.18 -1.2 62,225 - MPMX19_03824 0.18 -0.3 62,255 + MPMX19_03824 0.22 -0.7 62,255 + MPMX19_03824 0.22 -0.4 62,255 + MPMX19_03824 0.22 +0.9 62,256 - MPMX19_03824 0.22 -1.7 62,256 - MPMX19_03824 0.22 -1.1 62,256 - MPMX19_03824 0.22 -0.2 62,257 + MPMX19_03824 0.23 -1.7 62,257 + MPMX19_03824 0.23 -0.4 62,257 + MPMX19_03824 0.23 +1.2 62,257 + MPMX19_03824 0.23 -1.0 62,258 - MPMX19_03824 0.23 -1.2 62,258 - MPMX19_03824 0.23 +0.9 62,258 - MPMX19_03824 0.23 -1.4 62,258 - MPMX19_03824 0.23 +1.2 62,323 + MPMX19_03824 0.31 -0.3 62,323 + MPMX19_03824 0.31 -1.1 62,323 + MPMX19_03824 0.31 -0.3 62,324 - MPMX19_03824 0.31 +0.1 62,388 - MPMX19_03824 0.40 -0.1 62,417 + MPMX19_03824 0.44 +0.9 62,418 - MPMX19_03824 0.44 -0.2 62,419 + MPMX19_03824 0.44 -1.7 62,419 + MPMX19_03824 0.44 -0.2 62,419 + MPMX19_03824 0.44 -1.0 62,419 + MPMX19_03824 0.44 +0.8 62,419 + MPMX19_03824 0.44 +0.2 62,419 + MPMX19_03824 0.44 -0.5 62,419 + MPMX19_03824 0.44 -0.7 62,420 - MPMX19_03824 0.44 +0.5 62,420 - MPMX19_03824 0.44 -0.2 62,420 - MPMX19_03824 0.44 +0.2 62,420 - MPMX19_03824 0.44 -0.9 62,420 - MPMX19_03824 0.44 +0.5 62,420 - MPMX19_03824 0.44 +0.4 62,526 + MPMX19_03824 0.58 +0.2 62,526 + MPMX19_03824 0.58 -0.6 62,526 + MPMX19_03824 0.58 +1.2 62,527 - MPMX19_03824 0.59 +0.2 62,527 - MPMX19_03824 0.59 +0.0 62,529 + MPMX19_03824 0.59 +0.3 62,529 + MPMX19_03824 0.59 -0.1 62,530 - MPMX19_03824 0.59 -1.0 62,530 - MPMX19_03824 0.59 -0.2 62,530 - MPMX19_03824 0.59 -1.9 62,873 - +0.8 62,898 - -2.3 62,898 - +0.5 62,949 + -1.1 62,949 + -0.5 62,950 - +0.4 62,950 - -0.5 63,131 + +0.1 63,131 + +0.2 63,131 + -1.2 63,131 + +0.7 63,131 + +1.8 63,131 + -1.5 63,131 + -0.5 63,132 - -1.7 63,132 - -1.8 63,132 - -0.2 63,132 - -0.9 63,344 + MPMX19_03825 0.23 -2.4 63,345 - MPMX19_03825 0.23 -0.6 64,114 + -0.5 64,813 + +0.7 64,813 + -0.4 64,813 + -2.4 64,813 + -0.2 64,813 + -1.2 64,813 + -0.7 64,813 + -1.8 64,814 - -0.8 64,814 - +1.4 64,814 - -0.6 64,814 - +0.5 64,814 - -0.9 64,814 - -0.7 64,814 - -0.8 64,814 - -0.8 64,814 - -1.1 64,814 - +0.6 64,814 - +0.1 64,814 - -1.0 64,834 + -1.1 64,862 + -0.5 64,862 + -0.1 64,863 - -0.4 64,863 - -0.2 64,863 - -0.1 64,904 + +0.2 64,904 + -0.8 64,904 + -2.0 64,904 + -0.1 64,904 + +0.5 64,904 + -1.4 64,904 + -2.0 64,904 + -0.2 64,904 + -1.8 64,904 + -0.1 64,904 + +1.1 64,904 + -0.1 64,904 + -0.1 64,904 + +0.9 64,904 + +0.5 64,904 + -1.5 64,904 + -2.8 64,904 + -1.4 64,904 + -0.1 64,904 + -2.5 64,904 + -0.9 64,904 + -0.6 64,904 + +0.4 64,904 + +1.6 64,904 + -1.5 64,904 + -1.1 64,904 + +0.5 64,904 + +1.6 64,904 + -0.2 64,904 + -1.6 64,904 + +0.1 64,904 + -0.8 64,904 + +0.2 64,904 + +0.3 64,905 - -0.9 64,905 - -0.9 64,905 - -0.5 64,905 - +1.6 64,905 - -0.5 64,905 - -0.8 64,905 - -0.0 64,905 - +0.3 64,905 - -0.9 64,905 - -2.2 64,905 - -1.7 64,905 - -0.5 64,905 - -0.4 64,905 - -1.1 64,905 - -1.1 64,905 - -1.1 64,905 - -2.1 64,905 - +0.3 64,905 - -0.7 64,905 - +1.8 64,905 - -0.5 64,905 - -0.0 64,905 - +0.4 64,905 - -1.2 64,905 - -0.5 64,905 - -0.2 64,905 - +0.1
Or see this region's nucleotide sequence