Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03818

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03817 and MPMX19_03818 are separated by 18 nucleotidesMPMX19_03818 and MPMX19_03819 are separated by 224 nucleotidesMPMX19_03819 and MPMX19_03820 overlap by 4 nucleotides MPMX19_03817: MPMX19_03817 - 6-deoxy-6-sulfogluconolactonase, at 53,893 to 54,786 _03817 MPMX19_03818: MPMX19_03818 - Hydrogen peroxide-inducible genes activator, at 54,805 to 55,755 _03818 MPMX19_03819: MPMX19_03819 - NADP-reducing hydrogenase subunit HndA, at 55,980 to 56,492 _03819 MPMX19_03820: MPMX19_03820 - hypothetical protein, at 56,489 to 58,069 _03820 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.373 kb on + strand, within MPMX19_03817at 54.416 kb on - strand, within MPMX19_03817at 54.526 kb on + strand, within MPMX19_03817at 54.527 kb on - strand, within MPMX19_03817at 54.541 kb on + strand, within MPMX19_03817at 54.659 kb on - strand, within MPMX19_03817at 54.823 kb on + strandat 54.824 kb on - strandat 54.824 kb on - strandat 54.824 kb on - strandat 54.824 kb on - strandat 54.824 kb on - strandat 55.000 kb on + strand, within MPMX19_03818at 55.000 kb on + strand, within MPMX19_03818at 55.000 kb on + strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 56.058 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.687 kb on + strand, within MPMX19_03820at 56.687 kb on + strand, within MPMX19_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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54,373 + MPMX19_03817 0.54 +0.2
54,416 - MPMX19_03817 0.59 -0.2
54,526 + MPMX19_03817 0.71 -1.0
54,527 - MPMX19_03817 0.71 -1.4
54,541 + MPMX19_03817 0.72 +0.2
54,659 - MPMX19_03817 0.86 -0.2
54,823 + -0.0
54,824 - -0.7
54,824 - -0.4
54,824 - +0.1
54,824 - -0.5
54,824 - -0.5
55,000 + MPMX19_03818 0.21 -0.7
55,000 + MPMX19_03818 0.21 +1.2
55,000 + MPMX19_03818 0.21 -1.0
55,001 - MPMX19_03818 0.21 -0.8
55,001 - MPMX19_03818 0.21 +0.1
55,001 - MPMX19_03818 0.21 +0.8
55,001 - MPMX19_03818 0.21 -1.1
55,237 + MPMX19_03818 0.45 +0.0
55,237 + MPMX19_03818 0.45 +1.3
55,237 + MPMX19_03818 0.45 +0.4
55,237 + MPMX19_03818 0.45 +0.7
55,237 + MPMX19_03818 0.45 -0.4
55,237 + MPMX19_03818 0.45 -0.2
55,237 + MPMX19_03818 0.45 -1.0
55,237 + MPMX19_03818 0.45 -0.5
55,237 + MPMX19_03818 0.45 -0.7
55,237 + MPMX19_03818 0.45 -1.1
55,237 + MPMX19_03818 0.45 -1.7
55,237 + MPMX19_03818 0.45 -0.8
55,238 - MPMX19_03818 0.46 -1.1
55,238 - MPMX19_03818 0.46 +1.6
55,238 - MPMX19_03818 0.46 -0.5
55,238 - MPMX19_03818 0.46 -0.7
55,238 - MPMX19_03818 0.46 -1.7
55,238 - MPMX19_03818 0.46 -2.2
55,238 - MPMX19_03818 0.46 -1.4
55,238 - MPMX19_03818 0.46 -1.2
55,238 - MPMX19_03818 0.46 +0.2
55,282 + MPMX19_03818 0.50 +0.5
55,282 + MPMX19_03818 0.50 -0.7
55,282 + MPMX19_03818 0.50 -0.9
55,282 + MPMX19_03818 0.50 -1.0
55,282 + MPMX19_03818 0.50 -2.5
55,283 - MPMX19_03818 0.50 -0.2
55,283 - MPMX19_03818 0.50 +0.2
55,283 - MPMX19_03818 0.50 -0.0
55,283 - MPMX19_03818 0.50 -1.8
55,283 - MPMX19_03818 0.50 -0.5
55,283 - MPMX19_03818 0.50 -1.4
55,283 - MPMX19_03818 0.50 -0.7
55,295 - MPMX19_03818 0.52 -1.0
55,295 - MPMX19_03818 0.52 +1.1
55,295 - MPMX19_03818 0.52 -0.9
55,492 + MPMX19_03818 0.72 -0.4
55,492 + MPMX19_03818 0.72 +0.3
55,492 + MPMX19_03818 0.72 -0.5
55,492 + MPMX19_03818 0.72 -0.7
55,493 - MPMX19_03818 0.72 +0.3
55,493 - MPMX19_03818 0.72 -1.7
55,493 - MPMX19_03818 0.72 -2.1
55,493 - MPMX19_03818 0.72 +1.1
55,493 - MPMX19_03818 0.72 -1.4
55,624 + MPMX19_03818 0.86 -0.7
55,624 + MPMX19_03818 0.86 -0.9
55,624 + MPMX19_03818 0.86 +0.5
55,625 - MPMX19_03818 0.86 -0.2
55,625 - MPMX19_03818 0.86 +1.1
55,625 - MPMX19_03818 0.86 -0.0
55,625 - MPMX19_03818 0.86 +0.4
56,058 + MPMX19_03819 0.15 -0.8
56,139 + MPMX19_03819 0.31 +0.2
56,139 + MPMX19_03819 0.31 +0.2
56,139 + MPMX19_03819 0.31 -1.5
56,139 + MPMX19_03819 0.31 +0.4
56,139 + MPMX19_03819 0.31 -1.7
56,139 + MPMX19_03819 0.31 -0.9
56,139 + MPMX19_03819 0.31 -1.7
56,139 + MPMX19_03819 0.31 -1.8
56,139 + MPMX19_03819 0.31 +0.0
56,140 - MPMX19_03819 0.31 +0.2
56,140 - MPMX19_03819 0.31 +0.2
56,140 - MPMX19_03819 0.31 +0.6
56,140 - MPMX19_03819 0.31 +0.8
56,140 - MPMX19_03819 0.31 +0.6
56,639 + -2.1
56,639 + -1.2
56,639 + +0.9
56,639 + -0.5
56,639 + -0.1
56,639 + -0.5
56,639 + +0.0
56,639 + -1.1
56,639 + -0.5
56,640 - -0.5
56,640 - -0.4
56,640 - -0.3
56,640 - +0.8
56,640 - -0.6
56,640 - -0.8
56,687 + MPMX19_03820 0.13 -0.0
56,687 + MPMX19_03820 0.13 +0.5

Or see this region's nucleotide sequence