Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03788 and MPMX19_03789 are separated by 52 nucleotides MPMX19_03789 and MPMX19_03790 are separated by 37 nucleotides MPMX19_03790 and MPMX19_03791 are separated by 16 nucleotides MPMX19_03791 and MPMX19_03792 overlap by 4 nucleotides MPMX19_03792 and MPMX19_03793 are separated by 3 nucleotides
MPMX19_03788: MPMX19_03788 - hypothetical protein, at 25,140 to 25,589
_03788
MPMX19_03789: MPMX19_03789 - hypothetical protein, at 25,642 to 26,169
_03789
MPMX19_03790: MPMX19_03790 - hypothetical protein, at 26,207 to 26,461
_03790
MPMX19_03791: MPMX19_03791 - hypothetical protein, at 26,478 to 26,822
_03791
MPMX19_03792: MPMX19_03792 - hypothetical protein, at 26,819 to 27,406
_03792
MPMX19_03793: MPMX19_03793 - hypothetical protein, at 27,410 to 27,910
_03793
Position (kb)
26
27 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 25.385 kb on + strand, within MPMX19_03788 at 25.385 kb on + strand, within MPMX19_03788 at 25.385 kb on + strand, within MPMX19_03788 at 25.385 kb on + strand, within MPMX19_03788 at 25.386 kb on - strand, within MPMX19_03788 at 25.386 kb on - strand, within MPMX19_03788 at 25.386 kb on - strand, within MPMX19_03788 at 25.421 kb on + strand, within MPMX19_03788 at 25.461 kb on + strand, within MPMX19_03788 at 25.461 kb on + strand, within MPMX19_03788 at 25.461 kb on + strand, within MPMX19_03788 at 25.461 kb on + strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.462 kb on - strand, within MPMX19_03788 at 25.587 kb on + strand at 25.587 kb on + strand at 25.587 kb on + strand at 25.588 kb on - strand at 25.588 kb on - strand at 25.598 kb on + strand at 25.598 kb on + strand at 25.599 kb on - strand at 25.599 kb on - strand at 25.599 kb on - strand at 25.599 kb on - strand at 25.687 kb on + strand at 25.687 kb on + strand at 25.687 kb on + strand at 25.687 kb on + strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.688 kb on - strand at 25.858 kb on + strand, within MPMX19_03789 at 25.858 kb on + strand, within MPMX19_03789 at 25.858 kb on + strand, within MPMX19_03789 at 25.858 kb on + strand, within MPMX19_03789 at 25.859 kb on - strand, within MPMX19_03789 at 25.859 kb on - strand, within MPMX19_03789 at 25.859 kb on - strand, within MPMX19_03789 at 25.993 kb on + strand, within MPMX19_03789 at 25.993 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.023 kb on + strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.024 kb on - strand, within MPMX19_03789 at 26.029 kb on - strand, within MPMX19_03789 at 26.092 kb on + strand, within MPMX19_03789 at 26.092 kb on + strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.093 kb on - strand, within MPMX19_03789 at 26.276 kb on + strand, within MPMX19_03790 at 26.276 kb on + strand, within MPMX19_03790 at 26.276 kb on + strand, within MPMX19_03790 at 26.277 kb on - strand, within MPMX19_03790 at 26.277 kb on - strand, within MPMX19_03790 at 26.277 kb on - strand, within MPMX19_03790 at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.452 kb on + strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.453 kb on - strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.458 kb on + strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.459 kb on - strand at 27.459 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 25,385 + MPMX19_03788 0.54 -1.4 25,385 + MPMX19_03788 0.54 -0.8 25,385 + MPMX19_03788 0.54 -0.5 25,385 + MPMX19_03788 0.54 -0.7 25,386 - MPMX19_03788 0.55 -1.6 25,386 - MPMX19_03788 0.55 -0.3 25,386 - MPMX19_03788 0.55 -0.6 25,421 + MPMX19_03788 0.62 -1.4 25,461 + MPMX19_03788 0.71 -2.0 25,461 + MPMX19_03788 0.71 -1.2 25,461 + MPMX19_03788 0.71 -2.5 25,461 + MPMX19_03788 0.71 -1.7 25,462 - MPMX19_03788 0.72 +1.6 25,462 - MPMX19_03788 0.72 -1.1 25,462 - MPMX19_03788 0.72 -1.1 25,462 - MPMX19_03788 0.72 -0.4 25,462 - MPMX19_03788 0.72 -1.7 25,462 - MPMX19_03788 0.72 -0.8 25,462 - MPMX19_03788 0.72 -0.5 25,462 - MPMX19_03788 0.72 -0.7 25,587 + -0.3 25,587 + -0.4 25,587 + +1.8 25,588 - +0.6 25,588 - -0.6 25,598 + -0.6 25,598 + -2.0 25,599 - -0.2 25,599 - -0.8 25,599 - +0.8 25,599 - -2.0 25,687 + +0.8 25,687 + +0.8 25,687 + -2.1 25,687 + +0.5 25,688 - -2.5 25,688 - -0.9 25,688 - +0.4 25,688 - +0.0 25,688 - -2.0 25,688 - +0.5 25,688 - +0.3 25,858 + MPMX19_03789 0.41 -0.0 25,858 + MPMX19_03789 0.41 -0.4 25,858 + MPMX19_03789 0.41 -0.7 25,858 + MPMX19_03789 0.41 -0.6 25,859 - MPMX19_03789 0.41 -0.9 25,859 - MPMX19_03789 0.41 -0.4 25,859 - MPMX19_03789 0.41 -1.6 25,993 + MPMX19_03789 0.66 +1.8 25,993 + MPMX19_03789 0.66 -0.3 26,023 + MPMX19_03789 0.72 -0.1 26,023 + MPMX19_03789 0.72 -0.7 26,023 + MPMX19_03789 0.72 -1.0 26,023 + MPMX19_03789 0.72 -0.1 26,023 + MPMX19_03789 0.72 -0.2 26,023 + MPMX19_03789 0.72 -1.1 26,024 - MPMX19_03789 0.72 +1.8 26,024 - MPMX19_03789 0.72 -0.2 26,024 - MPMX19_03789 0.72 -0.2 26,024 - MPMX19_03789 0.72 -0.6 26,024 - MPMX19_03789 0.72 -0.7 26,024 - MPMX19_03789 0.72 +0.8 26,024 - MPMX19_03789 0.72 -0.8 26,024 - MPMX19_03789 0.72 -0.1 26,024 - MPMX19_03789 0.72 +0.2 26,024 - MPMX19_03789 0.72 +0.4 26,029 - MPMX19_03789 0.73 +0.4 26,092 + MPMX19_03789 0.85 -0.4 26,092 + MPMX19_03789 0.85 +1.3 26,093 - MPMX19_03789 0.85 -0.5 26,093 - MPMX19_03789 0.85 +0.2 26,093 - MPMX19_03789 0.85 -0.9 26,093 - MPMX19_03789 0.85 +0.2 26,093 - MPMX19_03789 0.85 -0.8 26,093 - MPMX19_03789 0.85 -0.2 26,093 - MPMX19_03789 0.85 -0.0 26,093 - MPMX19_03789 0.85 +0.8 26,276 + MPMX19_03790 0.27 +0.1 26,276 + MPMX19_03790 0.27 -1.0 26,276 + MPMX19_03790 0.27 -0.8 26,277 - MPMX19_03790 0.27 -0.9 26,277 - MPMX19_03790 0.27 -1.2 26,277 - MPMX19_03790 0.27 -0.5 27,452 + -1.7 27,452 + -1.0 27,452 + -0.7 27,452 + +0.4 27,452 + -1.8 27,452 + -0.1 27,452 + +0.4 27,452 + -0.5 27,452 + -0.5 27,453 - -1.3 27,453 - -1.5 27,453 - +0.5 27,453 - -1.5 27,453 - +0.2 27,453 - -1.0 27,453 - +0.2 27,453 - +0.1 27,453 - -0.2 27,458 + -1.2 27,458 + -1.4 27,458 + +0.7 27,458 + -0.6 27,458 + -0.3 27,458 + -0.4 27,458 + -1.0 27,458 + -0.9 27,459 - +0.4 27,459 - +0.1 27,459 - +0.3 27,459 - -1.7 27,459 - +0.1 27,459 - -1.8 27,459 - -0.2
Or see this region's nucleotide sequence