Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03774 and MPMX19_03775 are separated by 2 nucleotides MPMX19_03775 and MPMX19_03776 overlap by 4 nucleotides MPMX19_03776 and MPMX19_03777 overlap by 4 nucleotides MPMX19_03777 and MPMX19_03778 overlap by 4 nucleotides MPMX19_03778 and MPMX19_03779 overlap by 1 nucleotides MPMX19_03779 and MPMX19_03780 overlap by 1 nucleotides
MPMX19_03774: MPMX19_03774 - hypothetical protein, at 18,781 to 19,557
_03774
MPMX19_03775: MPMX19_03775 - hypothetical protein, at 19,560 to 20,135
_03775
MPMX19_03776: MPMX19_03776 - hypothetical protein, at 20,132 to 20,497
_03776
MPMX19_03777: MPMX19_03777 - hypothetical protein, at 20,494 to 20,754
_03777
MPMX19_03778: MPMX19_03778 - hypothetical protein, at 20,751 to 21,245
_03778
MPMX19_03779: MPMX19_03779 - hypothetical protein, at 21,245 to 21,490
_03779
MPMX19_03780: MPMX19_03780 - hypothetical protein, at 21,490 to 22,416
_03780
Position (kb)
20
21 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.292 kb on - strand, within MPMX19_03774 at 19.572 kb on - strand at 19.578 kb on - strand at 19.578 kb on - strand at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.679 kb on - strand, within MPMX19_03775 at 19.741 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.951 kb on - strand, within MPMX19_03775 at 19.978 kb on - strand, within MPMX19_03775 at 19.978 kb on - strand, within MPMX19_03775 at 20.020 kb on - strand, within MPMX19_03775 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.256 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.295 kb on - strand, within MPMX19_03776 at 20.764 kb on - strand at 20.764 kb on - strand at 20.764 kb on - strand at 20.764 kb on - strand at 20.764 kb on - strand at 20.806 kb on - strand, within MPMX19_03778 at 21.121 kb on - strand, within MPMX19_03778
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 19,292 - MPMX19_03774 0.66 -1.5 19,292 - MPMX19_03774 0.66 -1.0 19,292 - MPMX19_03774 0.66 -1.0 19,292 - MPMX19_03774 0.66 +0.1 19,292 - MPMX19_03774 0.66 -0.5 19,292 - MPMX19_03774 0.66 -0.1 19,292 - MPMX19_03774 0.66 -1.5 19,572 - -0.1 19,578 - -0.5 19,578 - +0.1 19,679 - MPMX19_03775 0.21 -1.0 19,679 - MPMX19_03775 0.21 -0.5 19,679 - MPMX19_03775 0.21 -0.3 19,679 - MPMX19_03775 0.21 +0.7 19,679 - MPMX19_03775 0.21 +1.4 19,679 - MPMX19_03775 0.21 -0.2 19,679 - MPMX19_03775 0.21 -1.0 19,679 - MPMX19_03775 0.21 +0.6 19,679 - MPMX19_03775 0.21 +0.4 19,679 - MPMX19_03775 0.21 -0.1 19,679 - MPMX19_03775 0.21 -0.7 19,679 - MPMX19_03775 0.21 -2.0 19,679 - MPMX19_03775 0.21 +0.2 19,679 - MPMX19_03775 0.21 -0.2 19,679 - MPMX19_03775 0.21 -1.1 19,679 - MPMX19_03775 0.21 -0.2 19,679 - MPMX19_03775 0.21 -0.7 19,679 - MPMX19_03775 0.21 +0.2 19,741 - MPMX19_03775 0.31 +1.1 19,951 - MPMX19_03775 0.68 +0.2 19,951 - MPMX19_03775 0.68 -0.2 19,951 - MPMX19_03775 0.68 +0.2 19,951 - MPMX19_03775 0.68 -0.2 19,951 - MPMX19_03775 0.68 -1.0 19,951 - MPMX19_03775 0.68 -1.1 19,951 - MPMX19_03775 0.68 -1.2 19,951 - MPMX19_03775 0.68 -2.5 19,978 - MPMX19_03775 0.73 -2.0 19,978 - MPMX19_03775 0.73 -0.2 20,020 - MPMX19_03775 0.80 -0.4 20,256 - MPMX19_03776 0.34 +1.2 20,256 - MPMX19_03776 0.34 -0.4 20,256 - MPMX19_03776 0.34 +0.2 20,256 - MPMX19_03776 0.34 +0.6 20,256 - MPMX19_03776 0.34 -1.2 20,256 - MPMX19_03776 0.34 -0.3 20,256 - MPMX19_03776 0.34 +0.1 20,256 - MPMX19_03776 0.34 +0.0 20,256 - MPMX19_03776 0.34 -0.4 20,256 - MPMX19_03776 0.34 -0.1 20,256 - MPMX19_03776 0.34 +1.3 20,256 - MPMX19_03776 0.34 +2.1 20,295 - MPMX19_03776 0.45 -0.8 20,295 - MPMX19_03776 0.45 +0.8 20,295 - MPMX19_03776 0.45 -0.7 20,295 - MPMX19_03776 0.45 +0.1 20,295 - MPMX19_03776 0.45 -0.5 20,764 - -0.8 20,764 - +1.2 20,764 - -1.5 20,764 - -0.3 20,764 - -0.9 20,806 - MPMX19_03778 0.11 +0.2 21,121 - MPMX19_03778 0.75 -1.0
Or see this region's nucleotide sequence