Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03585 and MPMX19_03586 are separated by 177 nucleotides MPMX19_03586 and MPMX19_03587 are separated by 85 nucleotides MPMX19_03587 and MPMX19_03588 overlap by 52 nucleotides MPMX19_03588 and MPMX19_03589 are separated by 93 nucleotides
MPMX19_03585: MPMX19_03585 - putative pyridine nucleotide-disulfide oxidoreductase RclA, at 1,009,478 to 1,010,848
_03585
MPMX19_03586: MPMX19_03586 - HTH-type transcriptional repressor ComR, at 1,011,026 to 1,011,628
_03586
MPMX19_03587: MPMX19_03587 - hypothetical protein, at 1,011,714 to 1,012,967
_03587
MPMX19_03588: MPMX19_03588 - HTH-type transcriptional regulator DmlR, at 1,012,916 to 1,013,866
_03588
MPMX19_03589: MPMX19_03589 - 2-haloacrylate reductase, at 1,013,960 to 1,014,976
_03589
Position (kb)
1011
1012
1013 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1010.744 kb on + strand at 1010.744 kb on + strand at 1010.744 kb on + strand at 1010.744 kb on + strand at 1010.744 kb on + strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.745 kb on - strand at 1010.846 kb on + strand at 1010.846 kb on + strand at 1010.846 kb on + strand at 1010.847 kb on - strand at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.209 kb on + strand, within MPMX19_03586 at 1011.210 kb on - strand, within MPMX19_03586 at 1011.210 kb on - strand, within MPMX19_03586 at 1011.210 kb on - strand, within MPMX19_03586 at 1011.392 kb on + strand, within MPMX19_03586 at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.644 kb on + strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.645 kb on - strand at 1011.752 kb on + strand at 1011.752 kb on + strand at 1011.753 kb on - strand at 1011.753 kb on - strand at 1011.753 kb on - strand at 1011.826 kb on - strand at 1011.912 kb on + strand, within MPMX19_03587 at 1011.912 kb on + strand, within MPMX19_03587 at 1011.912 kb on + strand, within MPMX19_03587 at 1011.913 kb on - strand, within MPMX19_03587 at 1011.913 kb on - strand, within MPMX19_03587 at 1012.021 kb on - strand, within MPMX19_03587 at 1012.021 kb on - strand, within MPMX19_03587 at 1012.378 kb on - strand, within MPMX19_03587 at 1012.386 kb on + strand, within MPMX19_03587 at 1012.387 kb on - strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.437 kb on + strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.438 kb on - strand, within MPMX19_03587 at 1012.481 kb on - strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.482 kb on + strand, within MPMX19_03587 at 1012.483 kb on - strand, within MPMX19_03587 at 1012.483 kb on - strand, within MPMX19_03587 at 1012.483 kb on - strand, within MPMX19_03587 at 1012.483 kb on - strand, within MPMX19_03587 at 1012.494 kb on + strand, within MPMX19_03587 at 1012.494 kb on + strand, within MPMX19_03587 at 1012.494 kb on + strand, within MPMX19_03587 at 1012.495 kb on - strand, within MPMX19_03587 at 1012.495 kb on - strand, within MPMX19_03587 at 1012.495 kb on - strand, within MPMX19_03587 at 1012.555 kb on - strand, within MPMX19_03587 at 1012.567 kb on - strand, within MPMX19_03587 at 1012.595 kb on - strand, within MPMX19_03587 at 1012.800 kb on + strand, within MPMX19_03587 at 1012.801 kb on - strand, within MPMX19_03587 at 1012.801 kb on - strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.806 kb on + strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.807 kb on - strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.833 kb on + strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1012.834 kb on - strand, within MPMX19_03587 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.103 kb on + strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.104 kb on - strand, within MPMX19_03588 at 1013.337 kb on + strand, within MPMX19_03588 at 1013.337 kb on + strand, within MPMX19_03588 at 1013.338 kb on - strand, within MPMX19_03588 at 1013.486 kb on + strand, within MPMX19_03588 at 1013.487 kb on - strand, within MPMX19_03588 at 1013.487 kb on - strand, within MPMX19_03588 at 1013.897 kb on - strand at 1013.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,010,744 + +0.6 1,010,744 + -0.4 1,010,744 + -1.0 1,010,744 + -0.8 1,010,744 + +0.4 1,010,745 - +0.1 1,010,745 - +0.3 1,010,745 - +0.1 1,010,745 - +0.3 1,010,745 - -0.9 1,010,745 - -2.2 1,010,745 - -0.3 1,010,745 - +0.3 1,010,745 - -0.5 1,010,846 + -1.0 1,010,846 + +0.1 1,010,846 + +0.1 1,010,847 - -0.6 1,011,209 + MPMX19_03586 0.30 -1.0 1,011,209 + MPMX19_03586 0.30 -1.6 1,011,209 + MPMX19_03586 0.30 -0.6 1,011,209 + MPMX19_03586 0.30 +0.1 1,011,209 + MPMX19_03586 0.30 +0.2 1,011,209 + MPMX19_03586 0.30 -0.1 1,011,209 + MPMX19_03586 0.30 -0.0 1,011,210 - MPMX19_03586 0.31 -0.2 1,011,210 - MPMX19_03586 0.31 -1.6 1,011,210 - MPMX19_03586 0.31 -0.1 1,011,392 + MPMX19_03586 0.61 -0.5 1,011,644 + -2.4 1,011,644 + +0.7 1,011,644 + +0.7 1,011,644 + -0.9 1,011,644 + -0.3 1,011,644 + +1.3 1,011,644 + -0.4 1,011,644 + -0.7 1,011,644 + -1.0 1,011,644 + -2.3 1,011,645 - +0.7 1,011,645 - -1.0 1,011,645 - -0.1 1,011,645 - -0.9 1,011,645 - -0.6 1,011,645 - +0.3 1,011,645 - +0.5 1,011,645 - -0.5 1,011,645 - +0.8 1,011,645 - +0.5 1,011,645 - -0.4 1,011,645 - -2.8 1,011,752 + -0.2 1,011,752 + +0.8 1,011,753 - -1.9 1,011,753 - -0.0 1,011,753 - -0.5 1,011,826 - -2.0 1,011,912 + MPMX19_03587 0.16 -0.5 1,011,912 + MPMX19_03587 0.16 -1.9 1,011,912 + MPMX19_03587 0.16 -1.1 1,011,913 - MPMX19_03587 0.16 +1.1 1,011,913 - MPMX19_03587 0.16 -0.7 1,012,021 - MPMX19_03587 0.24 +1.1 1,012,021 - MPMX19_03587 0.24 +0.7 1,012,378 - MPMX19_03587 0.53 +0.6 1,012,386 + MPMX19_03587 0.54 -1.7 1,012,387 - MPMX19_03587 0.54 -0.6 1,012,437 + MPMX19_03587 0.58 -2.0 1,012,437 + MPMX19_03587 0.58 -1.1 1,012,437 + MPMX19_03587 0.58 +0.2 1,012,437 + MPMX19_03587 0.58 -1.9 1,012,437 + MPMX19_03587 0.58 +0.7 1,012,437 + MPMX19_03587 0.58 -0.6 1,012,437 + MPMX19_03587 0.58 -0.9 1,012,437 + MPMX19_03587 0.58 -1.0 1,012,437 + MPMX19_03587 0.58 +0.1 1,012,437 + MPMX19_03587 0.58 -0.3 1,012,437 + MPMX19_03587 0.58 -0.1 1,012,438 - MPMX19_03587 0.58 -1.4 1,012,438 - MPMX19_03587 0.58 +0.5 1,012,438 - MPMX19_03587 0.58 -0.3 1,012,438 - MPMX19_03587 0.58 +1.5 1,012,438 - MPMX19_03587 0.58 +1.0 1,012,438 - MPMX19_03587 0.58 -0.1 1,012,481 - MPMX19_03587 0.61 +0.5 1,012,482 + MPMX19_03587 0.61 +1.5 1,012,482 + MPMX19_03587 0.61 +0.4 1,012,482 + MPMX19_03587 0.61 -1.2 1,012,482 + MPMX19_03587 0.61 -0.3 1,012,482 + MPMX19_03587 0.61 -0.0 1,012,482 + MPMX19_03587 0.61 +0.7 1,012,483 - MPMX19_03587 0.61 -1.1 1,012,483 - MPMX19_03587 0.61 +0.7 1,012,483 - MPMX19_03587 0.61 +0.1 1,012,483 - MPMX19_03587 0.61 -0.9 1,012,494 + MPMX19_03587 0.62 -3.1 1,012,494 + MPMX19_03587 0.62 -1.1 1,012,494 + MPMX19_03587 0.62 -0.1 1,012,495 - MPMX19_03587 0.62 +0.3 1,012,495 - MPMX19_03587 0.62 -0.8 1,012,495 - MPMX19_03587 0.62 -0.9 1,012,555 - MPMX19_03587 0.67 -0.4 1,012,567 - MPMX19_03587 0.68 -0.1 1,012,595 - MPMX19_03587 0.70 -0.2 1,012,800 + MPMX19_03587 0.87 +0.7 1,012,801 - MPMX19_03587 0.87 -0.3 1,012,801 - MPMX19_03587 0.87 +1.5 1,012,806 + MPMX19_03587 0.87 -0.0 1,012,806 + MPMX19_03587 0.87 +0.7 1,012,806 + MPMX19_03587 0.87 +0.8 1,012,806 + MPMX19_03587 0.87 +0.6 1,012,806 + MPMX19_03587 0.87 -0.5 1,012,806 + MPMX19_03587 0.87 +0.4 1,012,806 + MPMX19_03587 0.87 -1.7 1,012,806 + MPMX19_03587 0.87 -0.0 1,012,807 - MPMX19_03587 0.87 -0.5 1,012,807 - MPMX19_03587 0.87 -0.4 1,012,807 - MPMX19_03587 0.87 -0.8 1,012,807 - MPMX19_03587 0.87 +0.2 1,012,807 - MPMX19_03587 0.87 +0.9 1,012,807 - MPMX19_03587 0.87 +0.4 1,012,807 - MPMX19_03587 0.87 +0.5 1,012,807 - MPMX19_03587 0.87 -0.4 1,012,833 + MPMX19_03587 0.89 -1.6 1,012,833 + MPMX19_03587 0.89 -0.9 1,012,833 + MPMX19_03587 0.89 +0.1 1,012,833 + MPMX19_03587 0.89 +2.1 1,012,833 + MPMX19_03587 0.89 -1.5 1,012,833 + MPMX19_03587 0.89 +1.6 1,012,833 + MPMX19_03587 0.89 -1.1 1,012,833 + MPMX19_03587 0.89 -2.1 1,012,833 + MPMX19_03587 0.89 +0.2 1,012,833 + MPMX19_03587 0.89 -2.1 1,012,833 + MPMX19_03587 0.89 -1.0 1,012,833 + MPMX19_03587 0.89 -0.1 1,012,833 + MPMX19_03587 0.89 +0.7 1,012,833 + MPMX19_03587 0.89 -0.3 1,012,833 + MPMX19_03587 0.89 +0.3 1,012,833 + MPMX19_03587 0.89 -1.3 1,012,833 + MPMX19_03587 0.89 -0.9 1,012,834 - MPMX19_03587 0.89 +0.6 1,012,834 - MPMX19_03587 0.89 +0.4 1,012,834 - MPMX19_03587 0.89 -2.1 1,012,834 - MPMX19_03587 0.89 +1.3 1,012,834 - MPMX19_03587 0.89 +1.0 1,012,834 - MPMX19_03587 0.89 -0.5 1,012,834 - MPMX19_03587 0.89 +0.3 1,012,834 - MPMX19_03587 0.89 -0.7 1,012,834 - MPMX19_03587 0.89 -0.2 1,012,834 - MPMX19_03587 0.89 -1.2 1,012,834 - MPMX19_03587 0.89 +0.6 1,012,834 - MPMX19_03587 0.89 -1.3 1,012,834 - MPMX19_03587 0.89 -1.1 1,012,834 - MPMX19_03587 0.89 -1.0 1,012,834 - MPMX19_03587 0.89 +1.1 1,012,834 - MPMX19_03587 0.89 -0.6 1,012,834 - MPMX19_03587 0.89 -0.8 1,012,834 - MPMX19_03587 0.89 -1.4 1,012,834 - MPMX19_03587 0.89 +2.1 1,013,103 + MPMX19_03588 0.20 +0.1 1,013,103 + MPMX19_03588 0.20 -0.2 1,013,103 + MPMX19_03588 0.20 -0.3 1,013,103 + MPMX19_03588 0.20 -0.9 1,013,103 + MPMX19_03588 0.20 +0.1 1,013,103 + MPMX19_03588 0.20 -2.2 1,013,103 + MPMX19_03588 0.20 +0.4 1,013,103 + MPMX19_03588 0.20 -3.2 1,013,103 + MPMX19_03588 0.20 +0.5 1,013,104 - MPMX19_03588 0.20 -1.7 1,013,104 - MPMX19_03588 0.20 -0.7 1,013,104 - MPMX19_03588 0.20 +0.4 1,013,104 - MPMX19_03588 0.20 -0.4 1,013,104 - MPMX19_03588 0.20 -1.4 1,013,104 - MPMX19_03588 0.20 -0.9 1,013,104 - MPMX19_03588 0.20 +0.3 1,013,104 - MPMX19_03588 0.20 -0.5 1,013,337 + MPMX19_03588 0.44 +2.5 1,013,337 + MPMX19_03588 0.44 -1.2 1,013,338 - MPMX19_03588 0.44 -0.4 1,013,486 + MPMX19_03588 0.60 -1.1 1,013,487 - MPMX19_03588 0.60 -0.3 1,013,487 - MPMX19_03588 0.60 -1.1 1,013,897 - +0.1 1,013,921 - -1.4
Or see this region's nucleotide sequence